RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 CEP76Q8TAP6 659 aa12.09□□□□□ -0.47
HMGCS1-204ENST00000507293 NDRG1Q92597 394 aaKnown RBP12.09□□□□□ -0.47
HMGCS1-204ENST00000507293 ERCC4Q92889 916 aaPredicted RBP12.09□□□□□ -0.47
HMGCS1-204ENST00000507293 CAPN10Q9HC96 672 aa12.09□□□□□ -0.47
HMGCS1-204ENST00000507293 TSPAN16Q9UKR8 245 aa12.09□□□□□ -0.47
HMGCS1-204ENST00000507293 COQ4Q9Y3A0 265 aa12.09□□□□□ -0.47
HMGCS1-204ENST00000507293 XPO1O14980 1071 aaKnown RBP12.08□□□□□ -0.48
HMGCS1-204ENST00000507293 TOP3BO95985 862 aaKnown RBP12.08□□□□□ -0.48
HMGCS1-204ENST00000507293 ZBED1O96006 694 aa12.08□□□□□ -0.48
HMGCS1-204ENST00000507293 SERPINF2P08697 491 aa12.08□□□□□ -0.48
HMGCS1-204ENST00000507293 CD19P15391 556 aa12.08□□□□□ -0.48
HMGCS1-204ENST00000507293 SPINK2P20155 84 aa12.08□□□□□ -0.48
HMGCS1-204ENST00000507293 IL12RB1P42701 662 aa12.08□□□□□ -0.48
HMGCS1-204ENST00000507293 YWHAEP62258 255 aaKnown RBP12.08□□□□□ -0.48
HMGCS1-204ENST00000507293 FKBP3Q00688 224 aaKnown RBP12.08□□□□□ -0.48
HMGCS1-204ENST00000507293 GFPT1Q06210 699 aaPredicted RBP12.08□□□□□ -0.48
HMGCS1-204ENST00000507293 ADIGQ0VDE8 80 aa12.08□□□□□ -0.48
HMGCS1-204ENST00000507293 BST2Q10589 180 aaKnown RBP12.08□□□□□ -0.48
HMGCS1-204ENST00000507293 LRMPQ12912 555 aa12.08□□□□□ -0.48
HMGCS1-204ENST00000507293 FUT11Q495W5 492 aa12.08□□□□□ -0.48
HMGCS1-204ENST00000507293 COBLL1Q53SF7 1204 aa12.08□□□□□ -0.48
HMGCS1-204ENST00000507293 SGO2Q562F6 1265 aa12.08□□□□□ -0.48
HMGCS1-204ENST00000507293 PM20D1Q6GTS8 502 aa12.08□□□□□ -0.48
HMGCS1-204ENST00000507293 ANKS1BQ7Z6G8 1248 aa12.08□□□□□ -0.48
HMGCS1-204ENST00000507293 RABEPKQ7Z6M1 372 aa12.08□□□□□ -0.48
HMGCS1-204ENST00000507293 UBA3Q8TBC4 463 aa12.08□□□□□ -0.48
HMGCS1-204ENST00000507293 DDI1Q8WTU0 396 aa12.08□□□□□ -0.48
HMGCS1-204ENST00000507293 UCMAQ8WVF2 138 aa12.08□□□□□ -0.48
HMGCS1-204ENST00000507293 PLD4Q96BZ4 506 aa12.08□□□□□ -0.48
HMGCS1-204ENST00000507293 PIWIL1Q96J94 861 aaKnown RBP12.08□□□□□ -0.48
HMGCS1-204ENST00000507293 GSDMAQ96QA5 445 aa12.08□□□□□ -0.48
HMGCS1-204ENST00000507293 SLC32A1Q9H598 525 aa12.08□□□□□ -0.48
HMGCS1-204ENST00000507293 LRRC4Q9HBW1 653 aa12.08□□□□□ -0.48
HMGCS1-204ENST00000507293 THAP10Q9P2Z0 257 aaPredicted RBP12.08□□□□□ -0.48
HMGCS1-204ENST00000507293 HESX1Q9UBX0 185 aa12.08□□□□□ -0.48
HMGCS1-204ENST00000507293 CLEC4EQ9ULY5 219 aa12.08□□□□□ -0.48
HMGCS1-204ENST00000507293 WASF3Q9UPY6 502 aa12.08□□□□□ -0.48
HMGCS1-204ENST00000507293 USP24Q9UPU5 2620 aa12.08□□□□□ -0.48
HMGCS1-204ENST00000507293 C1QTNF9BB2RNN3 333 aa12.07□□□□□ -0.48
HMGCS1-204ENST00000507293 NPC1O15118 1278 aa12.07□□□□□ -0.48
HMGCS1-204ENST00000507293 SMC2O95347 1197 aa12.07□□□□□ -0.48
HMGCS1-204ENST00000507293 C1QTNF9P0C862 333 aa12.07□□□□□ -0.48
HMGCS1-204ENST00000507293 PRKCHP24723 683 aa12.07□□□□□ -0.48
HMGCS1-204ENST00000507293 LRRC63Q05C16 580 aa12.07□□□□□ -0.48
HMGCS1-204ENST00000507293 SEMA3BQ13214 749 aa12.07□□□□□ -0.48
HMGCS1-204ENST00000507293 ENPP2Q13822 863 aa12.07□□□□□ -0.48
HMGCS1-204ENST00000507293 ZNF234Q14588 700 aa12.07□□□□□ -0.48
HMGCS1-204ENST00000507293 TRIP4Q15650 581 aaPredicted RBP12.07□□□□□ -0.48
HMGCS1-204ENST00000507293 UNQ6494/PRO21346Q6UXR6 183 aa12.07□□□□□ -0.48
HMGCS1-204ENST00000507293 FMNL3Q8IVF7 1028 aa12.07□□□□□ -0.48
HMGCS1-204ENST00000507293 FAM217AQ8IXS0 508 aa12.07□□□□□ -0.48
HMGCS1-204ENST00000507293 RGL4Q8IZJ4 473 aa12.07□□□□□ -0.48
HMGCS1-204ENST00000507293 SIX6OS1Q8N1H7 587 aa12.07□□□□□ -0.48
HMGCS1-204ENST00000507293 HDDC3Q8N4P3 179 aa12.07□□□□□ -0.48
HMGCS1-204ENST00000507293 MINDY1Q8N5J2 469 aa12.07□□□□□ -0.48
HMGCS1-204ENST00000507293 UBR7Q8N806 425 aa12.07□□□□□ -0.48
HMGCS1-204ENST00000507293 OR2I1PQ8NGU4 316 aa12.07□□□□□ -0.48
HMGCS1-204ENST00000507293 SORCS1Q8WY21 1168 aa12.07□□□□□ -0.48
HMGCS1-204ENST00000507293 EDEM1Q92611 657 aa12.07□□□□□ -0.48
HMGCS1-204ENST00000507293 SMARCE1Q969G3 411 aa12.07□□□□□ -0.48
HMGCS1-204ENST00000507293 SLC35C1Q96A29 364 aa12.07□□□□□ -0.48
HMGCS1-204ENST00000507293 ZNF419Q96HQ0 510 aaPredicted RBP12.07□□□□□ -0.48
HMGCS1-204ENST00000507293 IPO9Q96P70 1041 aaKnown RBP12.07□□□□□ -0.48
HMGCS1-204ENST00000507293 PRDM16Q9HAZ2 1276 aa12.07□□□□□ -0.48
HMGCS1-204ENST00000507293 OLA1Q9NTK5 396 aaKnown RBP12.07□□□□□ -0.48
HMGCS1-204ENST00000507293 USP36Q9P275 1121 aaKnown RBP12.07□□□□□ -0.48
HMGCS1-204ENST00000507293 ARMCX3Q9UH62 379 aaPredicted RBP12.07□□□□□ -0.48
HMGCS1-204ENST00000507293 SFMBT1Q9UHJ3 866 aa12.07□□□□□ -0.48
HMGCS1-204ENST00000507293 NYNRINQ9P2P1 1898 aaKnown RBP12.06□□□□□ -0.48
HMGCS1-204ENST00000507293 SPAARA0A1B0GVQ0 90 aa12.06□□□□□ -0.48
HMGCS1-204ENST00000507293 GOLGA6L4A6NEF3 574 aa12.06□□□□□ -0.48
HMGCS1-204ENST00000507293 PCNX2A6NKB5 2137 aa12.06□□□□□ -0.48
HMGCS1-204ENST00000507293 YJEFN3A6XGL0 299 aa12.06□□□□□ -0.48
HMGCS1-204ENST00000507293 E7ENQ6 273 aa12.06□□□□□ -0.48
HMGCS1-204ENST00000507293 O00370 1275 aa12.06□□□□□ -0.48
HMGCS1-204ENST00000507293 ARHGAP33O14559 1287 aa12.06□□□□□ -0.48
HMGCS1-204ENST00000507293 SYNCRIPO60506 623 aaKnown RBP12.06□□□□□ -0.48
HMGCS1-204ENST00000507293 OPHN1O60890 802 aa12.06□□□□□ -0.48
HMGCS1-204ENST00000507293 PROS1P07225 676 aa12.06□□□□□ -0.48
HMGCS1-204ENST00000507293 SYPP08247 313 aa12.06□□□□□ -0.48
HMGCS1-204ENST00000507293 VDRP11473 427 aa12.06□□□□□ -0.48
HMGCS1-204ENST00000507293 TBXAS1P24557 533 aaPredicted RBP12.06□□□□□ -0.48
HMGCS1-204ENST00000507293 MAOBP27338 520 aa12.06□□□□□ -0.48
HMGCS1-204ENST00000507293 CD6P30203 668 aa12.06□□□□□ -0.48
HMGCS1-204ENST00000507293 EIF4HQ15056 248 aaKnown RBP12.06□□□□□ -0.48
HMGCS1-204ENST00000507293 PLEKHG6Q3KR16 790 aa12.06□□□□□ -0.48
HMGCS1-204ENST00000507293 SYCP2LQ5T4T6 812 aa12.06□□□□□ -0.48
HMGCS1-204ENST00000507293 BSPRYQ5W0U4 402 aa12.06□□□□□ -0.48
HMGCS1-204ENST00000507293 PIP4P1Q86T03 277 aa12.06□□□□□ -0.48
HMGCS1-204ENST00000507293 CACUL1Q86Y37 369 aa12.06□□□□□ -0.48
HMGCS1-204ENST00000507293 RBBP8NLQ8NC74 664 aaPredicted RBP12.06□□□□□ -0.48
HMGCS1-204ENST00000507293 ENGASEQ8NFI3 743 aa12.06□□□□□ -0.48
HMGCS1-204ENST00000507293 SPATA20Q8TB22 786 aa12.06□□□□□ -0.48
HMGCS1-204ENST00000507293 RNF139Q8WU17 664 aa12.06□□□□□ -0.48
HMGCS1-204ENST00000507293 TOE1Q96GM8 510 aaKnown RBP12.06□□□□□ -0.48
HMGCS1-204ENST00000507293 SLC2A11Q9BYW1 496 aa12.06□□□□□ -0.48
HMGCS1-204ENST00000507293 ADAM33Q9BZ11 813 aa12.06□□□□□ -0.48
HMGCS1-204ENST00000507293 CIPCQ9C0C6 399 aa12.06□□□□□ -0.48
HMGCS1-204ENST00000507293 MKRN2Q9H000 416 aaKnown RBP12.06□□□□□ -0.48
HMGCS1-204ENST00000507293 ELOVL2Q9NXB9 296 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms