RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 UBXN6Q9BZV1 441 aa18.87■□□□□ 0.61
SQSTM1-209ENST00000504627 SIX2Q9NPC8 291 aa18.87■□□□□ 0.61
SQSTM1-209ENST00000504627 CLIC5Q9NZA1 410 aa18.87■□□□□ 0.61
SQSTM1-209ENST00000504627 WDR35Q9P2L0 1181 aa18.87■□□□□ 0.61
SQSTM1-209ENST00000504627 HESX1Q9UBX0 185 aa18.87■□□□□ 0.61
SQSTM1-209ENST00000504627 APEX2Q9UBZ4 518 aa18.87■□□□□ 0.61
SQSTM1-209ENST00000504627 RASAL2Q9UJF2 1139 aa18.87■□□□□ 0.61
SQSTM1-209ENST00000504627 INVSQ9Y283 1065 aa18.87■□□□□ 0.61
SQSTM1-209ENST00000504627 LUC7L2Q9Y383 392 aaKnown RBP18.87■□□□□ 0.61
SQSTM1-209ENST00000504627 DCLK1O15075 740 aa18.86■□□□□ 0.61
SQSTM1-209ENST00000504627 EPHB6O15197 1021 aa18.86■□□□□ 0.61
SQSTM1-209ENST00000504627 NRDCO43847 1150 aa18.86■□□□□ 0.61
SQSTM1-209ENST00000504627 GREM1O60565 184 aa18.86■□□□□ 0.61
SQSTM1-209ENST00000504627 UCHL3P15374 230 aa18.86■□□□□ 0.61
SQSTM1-209ENST00000504627 SLC9A1P19634 815 aa18.86■□□□□ 0.61
SQSTM1-209ENST00000504627 GOLGA7BQ2TAP0 167 aa18.86■□□□□ 0.61
SQSTM1-209ENST00000504627 C10orf76Q5T2E6 689 aa18.86■□□□□ 0.61
SQSTM1-209ENST00000504627 KLHDC7AQ5VTJ3 777 aa18.86■□□□□ 0.61
SQSTM1-209ENST00000504627 GRAMD4Q6IC98 578 aa18.86■□□□□ 0.61
SQSTM1-209ENST00000504627 RSRC2Q7L4I2 434 aaKnown RBP18.86■□□□□ 0.61
SQSTM1-209ENST00000504627 TRMT11Q7Z4G4 463 aaKnown RBP18.86■□□□□ 0.61
SQSTM1-209ENST00000504627 SCD5Q86SK9 330 aa18.86■□□□□ 0.61
SQSTM1-209ENST00000504627 CCDC112Q8NEF3 446 aa18.86■□□□□ 0.61
SQSTM1-209ENST00000504627 ZNF397Q8NF99 534 aaPredicted RBP18.86■□□□□ 0.61
SQSTM1-209ENST00000504627 PANX2Q96RD6 677 aa18.86■□□□□ 0.61
SQSTM1-209ENST00000504627 NUCKS1Q9H1E3 243 aaKnown RBP18.86■□□□□ 0.61
SQSTM1-209ENST00000504627 DUSP15Q9H1R2 295 aaPredicted RBP18.86■□□□□ 0.61
SQSTM1-209ENST00000504627 ZDHHC4Q9NPG8 344 aa18.86■□□□□ 0.61
SQSTM1-209ENST00000504627 DNAJC17Q9NVM6 304 aaKnown RBP18.86■□□□□ 0.61
SQSTM1-209ENST00000504627 BCCIPQ9P287 314 aaKnown RBP eCLIP18.86■□□□□ 0.61
SQSTM1-209ENST00000504627 TSPAN16Q9UKR8 245 aa18.86■□□□□ 0.61
SQSTM1-209ENST00000504627 MYO6Q9UM54 1294 aa18.86■□□□□ 0.61
SQSTM1-209ENST00000504627 CACNA1AO00555 2505 aa18.86■□□□□ 0.61
SQSTM1-209ENST00000504627 RALGAPA1Q6GYQ0 2036 aa18.86■□□□□ 0.61
SQSTM1-209ENST00000504627 SGK1O00141 431 aa18.85■□□□□ 0.61
SQSTM1-209ENST00000504627 TYRP14679 529 aa18.85■□□□□ 0.61
SQSTM1-209ENST00000504627 KRT9P35527 623 aa18.85■□□□□ 0.61
SQSTM1-209ENST00000504627 KIR2DL1P43626 348 aaPredicted RBP18.85■□□□□ 0.61
SQSTM1-209ENST00000504627 TKTL1P51854 596 aa18.85■□□□□ 0.61
SQSTM1-209ENST00000504627 COG7P83436 770 aa18.85■□□□□ 0.61
SQSTM1-209ENST00000504627 EFEMP1Q12805 493 aa18.85■□□□□ 0.61
SQSTM1-209ENST00000504627 TMEM92Q6UXU6 159 aa18.85■□□□□ 0.61
SQSTM1-209ENST00000504627 C11orf74Q86VG3 221 aa18.85■□□□□ 0.61
SQSTM1-209ENST00000504627 RASSF3Q86WH2 238 aa18.85■□□□□ 0.61
SQSTM1-209ENST00000504627 PHTF2Q8N3S3 785 aa18.85■□□□□ 0.61
SQSTM1-209ENST00000504627 ZNF276Q8N554 614 aa18.85■□□□□ 0.61
SQSTM1-209ENST00000504627 ZNF513Q8N8E2 541 aaPredicted RBP18.85■□□□□ 0.61
SQSTM1-209ENST00000504627 TERB1Q8NA31 727 aa18.85■□□□□ 0.61
SQSTM1-209ENST00000504627 MDGA1Q8NFP4 955 aa18.85■□□□□ 0.61
SQSTM1-209ENST00000504627 BAP1Q92560 729 aa18.85■□□□□ 0.61
SQSTM1-209ENST00000504627 FAM81BQ96LP2 452 aa18.85■□□□□ 0.61
SQSTM1-209ENST00000504627 NT5C1BQ96P26 610 aa18.85■□□□□ 0.61
SQSTM1-209ENST00000504627 DNAJC7Q99615 494 aa18.85■□□□□ 0.61
SQSTM1-209ENST00000504627 LRRC4Q9HBW1 653 aa18.85■□□□□ 0.61
SQSTM1-209ENST00000504627 ABHD10Q9NUJ1 306 aa18.85■□□□□ 0.61
SQSTM1-209ENST00000504627 STRIP2Q9ULQ0 834 aa18.85■□□□□ 0.61
SQSTM1-209ENST00000504627 PCDHGA5Q9Y5G8 931 aa18.85■□□□□ 0.61
SQSTM1-209ENST00000504627 SPAG17Q6Q759 2223 aa18.85■□□□□ 0.61
SQSTM1-209ENST00000504627 MED19A0JLT2 244 aaPredicted RBP18.84■□□□□ 0.61
SQSTM1-209ENST00000504627 DCDC2BA2VCK2 349 aa18.84■□□□□ 0.61
SQSTM1-209ENST00000504627 GDF9O60383 454 aa18.84■□□□□ 0.61
SQSTM1-209ENST00000504627 ZBED1O96006 694 aa18.84■□□□□ 0.61
SQSTM1-209ENST00000504627 HMBSP08397 361 aa18.84■□□□□ 0.61
SQSTM1-209ENST00000504627 ZNF806P0C7X5 589 aa18.84■□□□□ 0.61
SQSTM1-209ENST00000504627 VDRP11473 427 aa18.84■□□□□ 0.61
SQSTM1-209ENST00000504627 FECHP22830 423 aa18.84■□□□□ 0.61
SQSTM1-209ENST00000504627 MPLP40238 635 aa18.84■□□□□ 0.61
SQSTM1-209ENST00000504627 BCAT1P54687 386 aa18.84■□□□□ 0.61
SQSTM1-209ENST00000504627 POLR2FP61218 127 aaKnown RBP18.84■□□□□ 0.61
SQSTM1-209ENST00000504627 YWHAGP61981 247 aaKnown RBP eCLIP18.84■□□□□ 0.61
SQSTM1-209ENST00000504627 PDE4CQ08493 712 aa18.84■□□□□ 0.61
SQSTM1-209ENST00000504627 SF3A2Q15428 464 aaKnown RBP18.84■□□□□ 0.61
SQSTM1-209ENST00000504627 RAB41Q5JT25 222 aa18.84■□□□□ 0.61
SQSTM1-209ENST00000504627 FMNL3Q8IVF7 1028 aa18.84■□□□□ 0.61
SQSTM1-209ENST00000504627 LRRC8AQ8IWT6 810 aa18.84■□□□□ 0.61
SQSTM1-209ENST00000504627 PGBD3Q8N328 593 aa18.84■□□□□ 0.61
SQSTM1-209ENST00000504627 BHMTQ93088 406 aa18.84■□□□□ 0.61
SQSTM1-209ENST00000504627 ZNF510Q9Y2H8 683 aa18.84■□□□□ 0.61
SQSTM1-209ENST00000504627 FHOD1Q9Y613 1164 aa18.84■□□□□ 0.61
SQSTM1-209ENST00000504627 KIAA1549LQ6ZVL6 1849 aa18.84■□□□□ 0.61
SQSTM1-209ENST00000504627 XPO1O14980 1071 aaKnown RBP18.83■□□□□ 0.6
SQSTM1-209ENST00000504627 TRIM24O15164 1050 aa18.83■□□□□ 0.6
SQSTM1-209ENST00000504627 STC2O76061 302 aa18.83■□□□□ 0.6
SQSTM1-209ENST00000504627 ADKP55263 362 aaKnown RBP18.83■□□□□ 0.6
SQSTM1-209ENST00000504627 CREB5Q02930 508 aa18.83■□□□□ 0.6
SQSTM1-209ENST00000504627 BST2Q10589 180 aaKnown RBP18.83■□□□□ 0.6
SQSTM1-209ENST00000504627 TMEM270Q6UE05 265 aa18.83■□□□□ 0.6
SQSTM1-209ENST00000504627 PPM1KQ8N3J5 372 aa18.83■□□□□ 0.6
SQSTM1-209ENST00000504627 OR8K1Q8NGG5 319 aa18.83■□□□□ 0.6
SQSTM1-209ENST00000504627 KCNV2Q8TDN2 545 aa18.83■□□□□ 0.6
SQSTM1-209ENST00000504627 CPLX3Q8WVH0 158 aa18.83■□□□□ 0.6
SQSTM1-209ENST00000504627 HMGB4Q8WW32 186 aa18.83■□□□□ 0.6
SQSTM1-209ENST00000504627 NAA15Q9BXJ9 866 aaKnown RBP18.83■□□□□ 0.6
SQSTM1-209ENST00000504627 ULBP1Q9BZM6 244 aa18.83■□□□□ 0.6
SQSTM1-209ENST00000504627 DCLK3Q9C098 648 aa18.83■□□□□ 0.6
SQSTM1-209ENST00000504627 MARK1Q9P0L2 795 aa18.83■□□□□ 0.6
SQSTM1-209ENST00000504627 KIAA1257Q9ULG3 409 aa18.83■□□□□ 0.6
SQSTM1-209ENST00000504627 PCDHB4Q9Y5E5 795 aa18.83■□□□□ 0.6
SQSTM1-209ENST00000504627 TCRBV21S2A2A0A5A6 115 aa18.82■□□□□ 0.6
SQSTM1-209ENST00000504627 SLC12A8A0AV02 714 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms