RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 ADSSP30520 456 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 PRKAA2P54646 552 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 PARP6Q2NL67 630 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 MGAT5BQ3V5L5 792 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 C10orf120Q5SQS8 335 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 CHSY1Q86X52 802 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 TMPRSS6Q8IU80 811 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 TMEM86AQ8N2M4 240 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 HSFY1Q96LI6 401 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 VAT1Q99536 393 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 TBC1D13Q9NVG8 400 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 GRM5P41594 1212 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 PSEN2P49810 448 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 TRIP10Q15642 601 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 SEL1L3Q68CR1 1132 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 PDPK2PQ6A1A2 396 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 FAM124BQ9H5Z6 455 aaPredicted RBP11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 NDFIP2Q9NV92 336 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 KCNK4Q9NYG8 393 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 TMEM59LQ9UK28 342 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 VPS9D1Q9Y2B5 631 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 ANKRD6Q9Y2G4 727 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 MARF1Q9Y4F3 1742 aaKnown RBP11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 A0A0A0MRY4 1105 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 TCRBV7S2A1N4TA0A589 114 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 JCHAINP01591 159 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 AVPR1AP37288 418 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 ERFP50548 548 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 NUDT2P50583 147 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 SCARA3Q6AZY7 606 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 FNIP1Q8TF40 1166 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 TLCD1Q96CP7 247 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 SPATA13Q96N96 652 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 SNRNP25Q9BV90 132 aaKnown RBP11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 MMADHCQ9H3L0 296 aaPredicted RBP11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 TMEM51Q9NW97 253 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 FCHO1O14526 889 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 NOS2P35228 1153 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 HARS2P49590 506 aaKnown RBP11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 CDK7P50613 346 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 ILF2Q12905 390 aaKnown RBP11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 TRMT5Q32P41 509 aaKnown RBP11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 ASIC4Q96FT7 647 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 C12orf42Q96LP6 360 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 FICDQ9BVA6 458 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 NRDE2Q9H7Z3 1164 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 SUPT3HB4E1H0 165 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 SUPT3HO75486 399 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 STX5Q13190 355 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 TRABD2AQ86V40 505 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 SIAH1Q8IUQ4 282 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 KIAA0319LQ8IZA0 1049 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 TDRD5Q8NAT2 981 aaKnown RBP11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 RAET1EQ8TD07 263 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 TRIM54Q9BYV2 358 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 YY1AP1Q9H869 796 aa11.07□□□□□ -0.64
LIMCH1-205ENST00000503057 LOC102724159A0A0B4J2E5 919 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 UNC5CO95185 931 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 FLOT2Q14254 428 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 PWP2Q15269 919 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 EEF1DP3Q658K8 133 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 MRNIPQ6NTE8 343 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 LBX2Q6XYB7 198 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 JADE3Q92613 823 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 PRCCQ92733 491 aaPredicted RBP11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 PWWP2AQ96N64 755 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 MTG1Q9BT17 334 aaPredicted RBP11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 MORF4L1Q9UBU8 362 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 R3HDM2Q9Y2K5 976 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 ACOT9Q9Y305 439 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 UMODL1Q5DID0 1318 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 ZNF862O60290 1169 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 FKBP6O75344 327 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 ACAT1P24752 427 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 HOXD13P35453 343 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 ETFBP38117 255 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 ARHGDIAP52565 204 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 CRYMQ14894 314 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 KPNB1Q14974 876 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 LRRC36Q1X8D7 754 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 RNF180Q86T96 592 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 KCNMB4Q86W47 210 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 ANKRD52Q8NB46 1076 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 TMEM237Q96Q45 408 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 LBHD1Q9BQE6 289 aaPredicted RBP11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 ZC3H4Q9UPT8 1303 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 MAGEA13PA6NCF6 341 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 UNGP13051 313 aaPredicted RBP11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 CCR1P32246 355 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 HSPA13P48723 471 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 SATB1Q01826 763 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 QPCTQ16769 361 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 XYLT1Q86Y38 959 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 LZTR1Q8N653 840 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 LRRC52Q8N7C0 313 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 PPTC7Q8NI37 304 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 MUC3BQ9H195 1237 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 GID8Q9NWU2 228 aa11.06□□□□□ -0.64
LIMCH1-205ENST00000503057 ERI2A8K979 691 aaKnown RBP11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms