RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 KCTD15Q96SI1 283 aaPredicted RBP12.4□□□□□ -0.42
NUP54-202ENST00000502850 SLC9A7Q96T83 725 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 APBA2Q99767 749 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 NAT9Q9BTE0 207 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 B3GNT5Q9BYG0 378 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 ETNK1Q9HBU6 452 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 RRN3Q9NYV6 651 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 FZD10Q9ULW2 581 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 TTLL3Q9Y4R7 772 aa12.4□□□□□ -0.42
NUP54-202ENST00000502850 A0A0A0MRY4 1105 aa12.39□□□□□ -0.43
NUP54-202ENST00000502850 TREHO43280 583 aa12.39□□□□□ -0.43
NUP54-202ENST00000502850 OPHN1O60890 802 aa12.39□□□□□ -0.43
NUP54-202ENST00000502850 APOEP02649 317 aa12.39□□□□□ -0.43
NUP54-202ENST00000502850 FAM200BP0CF97 657 aa12.39□□□□□ -0.43
NUP54-202ENST00000502850 NQO1P15559 274 aaKnown RBP12.39□□□□□ -0.43
NUP54-202ENST00000502850 PAX3P23760 479 aa12.39□□□□□ -0.43
NUP54-202ENST00000502850 LHX1P48742 406 aa12.39□□□□□ -0.43
NUP54-202ENST00000502850 ELF3P78545 371 aaPredicted RBP12.39□□□□□ -0.43
NUP54-202ENST00000502850 MRPS5P82675 430 aaKnown RBP12.39□□□□□ -0.43
NUP54-202ENST00000502850 CAP1Q01518 475 aa12.39□□□□□ -0.43
NUP54-202ENST00000502850 PDK1Q15118 436 aa12.39□□□□□ -0.43
NUP54-202ENST00000502850 RAB6CQ53S08 254 aa12.39□□□□□ -0.43
NUP54-202ENST00000502850 SWT1Q5T5J6 900 aaKnown RBP12.39□□□□□ -0.43
NUP54-202ENST00000502850 PIGZQ86VD9 579 aa12.39□□□□□ -0.43
NUP54-202ENST00000502850 ECHDC2Q86YB7 292 aa12.39□□□□□ -0.43
NUP54-202ENST00000502850 TAB3Q8N5C8 712 aaPredicted RBP12.39□□□□□ -0.43
NUP54-202ENST00000502850 FITM2Q8N6M3 262 aa12.39□□□□□ -0.43
NUP54-202ENST00000502850 TCP10LQ8TDR4 215 aa12.39□□□□□ -0.43
NUP54-202ENST00000502850 HTR3CQ8WXA8 447 aa12.39□□□□□ -0.43
NUP54-202ENST00000502850 FAM149B1Q96BN6 582 aa12.39□□□□□ -0.43
NUP54-202ENST00000502850 KLHL29Q96CT2 875 aa12.39□□□□□ -0.43
NUP54-202ENST00000502850 SPATA13Q96N96 652 aa12.39□□□□□ -0.43
NUP54-202ENST00000502850 OLFM3Q96PB7 478 aa12.39□□□□□ -0.43
NUP54-202ENST00000502850 LRRC37BQ96QE4 947 aa12.39□□□□□ -0.43
NUP54-202ENST00000502850 RAB6CQ9H0N0 254 aa12.39□□□□□ -0.43
NUP54-202ENST00000502850 CHST12Q9NRB3 414 aa12.39□□□□□ -0.43
NUP54-202ENST00000502850 KLK14Q9P0G3 267 aa12.39□□□□□ -0.43
NUP54-202ENST00000502850 CYB561D2O14569 222 aa12.38□□□□□ -0.43
NUP54-202ENST00000502850 COPEO14579 308 aa12.38□□□□□ -0.43
NUP54-202ENST00000502850 KLF11O14901 512 aa12.38□□□□□ -0.43
NUP54-202ENST00000502850 SPTLC1O15269 473 aa12.38□□□□□ -0.43
NUP54-202ENST00000502850 GABBR2O75899 941 aa12.38□□□□□ -0.43
NUP54-202ENST00000502850 UNC5CO95185 931 aa12.38□□□□□ -0.43
NUP54-202ENST00000502850 TGDSO95455 350 aa12.38□□□□□ -0.43
NUP54-202ENST00000502850 AKR1A1P14550 325 aa12.38□□□□□ -0.43
NUP54-202ENST00000502850 PTPN1P18031 435 aaKnown RBP12.38□□□□□ -0.43
NUP54-202ENST00000502850 NEK3P51956 506 aa12.38□□□□□ -0.43
NUP54-202ENST00000502850 GBE1Q04446 702 aa12.38□□□□□ -0.43
NUP54-202ENST00000502850 ADIGQ0VDE8 80 aa12.38□□□□□ -0.43
NUP54-202ENST00000502850 DBN1Q16643 649 aa12.38□□□□□ -0.43
NUP54-202ENST00000502850 FSCN1Q16658 493 aaKnown RBP12.38□□□□□ -0.43
NUP54-202ENST00000502850 NCBP2-AS2Q69YL0 99 aa12.38□□□□□ -0.43
NUP54-202ENST00000502850 KCNT2Q6UVM3 1135 aa12.38□□□□□ -0.43
NUP54-202ENST00000502850 CCDC91Q7Z6B0 441 aa12.38□□□□□ -0.43
NUP54-202ENST00000502850 CAND1Q86VP6 1230 aaKnown RBP12.38□□□□□ -0.43
NUP54-202ENST00000502850 CTAGE3PQ8IX95 158 aa12.38□□□□□ -0.43
NUP54-202ENST00000502850 DEFB106AQ8N104 65 aa12.38□□□□□ -0.43
NUP54-202ENST00000502850 RAB3IL1Q8TBN0 382 aa12.38□□□□□ -0.43
NUP54-202ENST00000502850 CCDC110Q8TBZ0 833 aa12.38□□□□□ -0.43
NUP54-202ENST00000502850 TMEM40Q8WWA1 233 aa12.38□□□□□ -0.43
NUP54-202ENST00000502850 NTAN1Q96AB6 310 aa12.38□□□□□ -0.43
NUP54-202ENST00000502850 RMDN2Q96LZ7 410 aa12.38□□□□□ -0.43
NUP54-202ENST00000502850 PPP1R10Q96QC0 940 aaKnown RBP12.38□□□□□ -0.43
NUP54-202ENST00000502850 SLC2A13Q96QE2 648 aa12.38□□□□□ -0.43
NUP54-202ENST00000502850 EBNA1BP2Q99848 306 aaKnown RBP12.38□□□□□ -0.43
NUP54-202ENST00000502850 TUBB6Q9BUF5 446 aa12.38□□□□□ -0.43
NUP54-202ENST00000502850 CXCL16Q9H2A7 254 aa12.38□□□□□ -0.43
NUP54-202ENST00000502850 MANSC1Q9H8J5 431 aa12.38□□□□□ -0.43
NUP54-202ENST00000502850 MTMR10Q9NXD2 777 aa12.38□□□□□ -0.43
NUP54-202ENST00000502850 DTLQ9NZJ0 730 aa12.38□□□□□ -0.43
NUP54-202ENST00000502850 CPA4Q9UI42 421 aa12.38□□□□□ -0.43
NUP54-202ENST00000502850 TRPV2Q9Y5S1 764 aa12.38□□□□□ -0.43
NUP54-202ENST00000502850 USP3Q9Y6I4 520 aa12.38□□□□□ -0.43
NUP54-202ENST00000502850 C2CD2LO14523 706 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 GABRDO14764 452 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 NCAM2O15394 837 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 DGKIO75912 1065 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 DHRS4L1P0CG22 281 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 ADRA1DP25100 572 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 LMO2P25791 158 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 CCNFP41002 786 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 GLUD2P49448 558 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 MRPS6P82932 125 aaKnown RBP12.37□□□□□ -0.43
NUP54-202ENST00000502850 BNIPLQ7Z465 357 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 IGDCC3Q8IVU1 814 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 CCDC185Q8N715 623 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 PPM1NQ8N819 430 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 SMG8Q8ND04 991 aaKnown RBP12.37□□□□□ -0.43
NUP54-202ENST00000502850 CLEC4CQ8WTT0 213 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 CDKL2Q92772 493 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 INPP5DQ92835 1189 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 WNT8BQ93098 351 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 NT5C3BQ969T7 300 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 NPY6RQ99463 290 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 TACO1Q9BSH4 297 aaKnown RBP12.37□□□□□ -0.43
NUP54-202ENST00000502850 MED10Q9BTT4 135 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 TRIM62Q9BVG3 475 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 TRIM55Q9BYV6 548 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 BRD8Q9H0E9 1235 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 PCDHA11Q9Y5I1 949 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms