RNA–Protein interactions for RNA: ENST00000496622.1

SSBP1-213, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 1 (best)

Gene SSBP1, Length 2,620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-213ENST00000496622 SOX4Q06945 474 aaPredicted RBP6.42□□□□□ -1.38
SSBP1-213ENST00000496622 INAQ16352 499 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 SGSM1Q2NKQ1 1148 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 RAB6CQ53S08 254 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 TXNRD3NBQ6F5E7 133 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 LRRC69Q6ZNQ3 347 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 NPAS3Q8IXF0 933 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 EMC1Q8N766 993 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 RNF169Q8NCN4 708 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 MSANTD4Q8NCY6 345 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 STON2Q8WXE9 905 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 HPDLQ96IR7 371 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 RAB6CQ9H0N0 254 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 EPB41L5Q9HCM4 733 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 TRMT13Q9NUP7 481 aaKnown RBP6.42□□□□□ -1.38
SSBP1-213ENST00000496622 FAM49BQ9NUQ9 324 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 NFU1Q9UMS0 254 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 R3HDM2Q9Y2K5 976 aaKnown RBP6.42□□□□□ -1.38
SSBP1-213ENST00000496622 CHD7Q9P2D1 2997 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 ZSWIM8A7E2V4 1837 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 PLXNB2O15031 1838 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 CCDC151A5D8V7 595 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 BTNL10A8MVZ5 291 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 F8VP50 259 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 GOLGA8SH3BPF8 625 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 KIAA0391O15091 583 aaKnown RBP6.42□□□□□ -1.38
SSBP1-213ENST00000496622 BNIP3LO60238 219 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 SMNDC1O75940 238 aaKnown RBP eCLIP6.42□□□□□ -1.38
SSBP1-213ENST00000496622 HEXIM1O94992 359 aaKnown RBP6.42□□□□□ -1.38
SSBP1-213ENST00000496622 KRT14P02533 472 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 CYP1A1P04798 512 aaPredicted RBP6.42□□□□□ -1.38
SSBP1-213ENST00000496622 COL6A1P12109 1028 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 AKR1A1P14550 325 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 MLH1P40692 756 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 TM4SF4P48230 202 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 CPT1AP50416 773 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 MAP7Q14244 749 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 TMEM132DQ14C87 1099 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 KCNA10Q16322 511 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 PCSK7Q16549 785 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 PAN2Q504Q3 1202 aaKnown RBP6.42□□□□□ -1.38
SSBP1-213ENST00000496622 ZNF667Q5HYK9 610 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 ZNF362Q5T0B9 420 aaPredicted RBP6.42□□□□□ -1.38
SSBP1-213ENST00000496622 TWF2Q6IBS0 349 aaKnown RBP6.42□□□□□ -1.38
SSBP1-213ENST00000496622 C8orf74Q6P047 294 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 DENND1BQ6P3S1 775 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 SLC2A7Q6PXP3 512 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 MILR1Q7Z6M3 343 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 PRUNE1Q86TP1 453 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 GALNT6Q8NCL4 622 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 CD99L2Q8TCZ2 262 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 ATG4AQ8WYN0 398 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 PBXIP1Q96AQ6 731 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 C18orf8Q96DM3 657 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 PAAF1Q9BRP4 392 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 ADPGKQ9BRR6 497 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 CFHR5Q9BXR6 569 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 NFKBIZQ9BYH8 718 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 GCOM2Q9BZD3 368 aaPredicted RBP6.42□□□□□ -1.38
SSBP1-213ENST00000496622 ELOVL4Q9GZR5 314 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 AGO3Q9H9G7 860 aaKnown RBP6.42□□□□□ -1.38
SSBP1-213ENST00000496622 AVENQ9NQS1 362 aaPredicted RBP6.42□□□□□ -1.38
SSBP1-213ENST00000496622 DPP3Q9NY33 737 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 ITGB1BP2Q9UKP3 347 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 RAB21Q9UL25 225 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 L1RE1Q9UN81 338 aa6.42□□□□□ -1.38
SSBP1-213ENST00000496622 GRIN2DO15399 1336 aa6.41□□□□□ -1.38
SSBP1-213ENST00000496622 TRIP12Q14669 1992 aaPredicted RBP6.41□□□□□ -1.38
SSBP1-213ENST00000496622 A0A0A6YYK5 440 aaPredicted RBP6.41□□□□□ -1.38
SSBP1-213ENST00000496622 SERTM1A2A2V5 107 aa6.41□□□□□ -1.38
SSBP1-213ENST00000496622 TARSL2A2RTX5 802 aaKnown RBP6.41□□□□□ -1.38
SSBP1-213ENST00000496622 C17orf102A2RUQ5 167 aa6.41□□□□□ -1.38
SSBP1-213ENST00000496622 PI4K2BG5E9Z4 385 aa6.41□□□□□ -1.38
SSBP1-213ENST00000496622 M0QX08 132 aa6.41□□□□□ -1.38
SSBP1-213ENST00000496622 MYO1FO00160 1098 aa6.41□□□□□ -1.38
SSBP1-213ENST00000496622 HAS3O00219 553 aa6.41□□□□□ -1.38
SSBP1-213ENST00000496622 ZC3H11AO75152 810 aaKnown RBP eCLIP6.41□□□□□ -1.38
SSBP1-213ENST00000496622 SUPT3HO75486 399 aa6.41□□□□□ -1.38
SSBP1-213ENST00000496622 FBXO21O94952 628 aa6.41□□□□□ -1.38
SSBP1-213ENST00000496622 TROVE2P10155 538 aaKnown RBP eCLIP6.41□□□□□ -1.38
SSBP1-213ENST00000496622 MCF2P10911 925 aa6.41□□□□□ -1.38
SSBP1-213ENST00000496622 CYBAP13498 195 aa6.41□□□□□ -1.38
SSBP1-213ENST00000496622 LMO2P25791 158 aa6.41□□□□□ -1.38
SSBP1-213ENST00000496622 NDST1P52848 882 aa6.41□□□□□ -1.38
SSBP1-213ENST00000496622 RAD23BP54727 409 aa6.41□□□□□ -1.38
SSBP1-213ENST00000496622 OGDHQ02218 1023 aa6.41□□□□□ -1.38
SSBP1-213ENST00000496622 PLOD1Q02809 727 aaPredicted RBP6.41□□□□□ -1.38
SSBP1-213ENST00000496622 CKAP4Q07065 602 aaKnown RBP6.41□□□□□ -1.38
SSBP1-213ENST00000496622 SREBF2Q12772 1141 aa6.41□□□□□ -1.38
SSBP1-213ENST00000496622 SP140Q13342 867 aa6.41□□□□□ -1.38
SSBP1-213ENST00000496622 MAMLD1Q13495 774 aa6.41□□□□□ -1.38
SSBP1-213ENST00000496622 TAF5Q15542 800 aa6.41□□□□□ -1.38
SSBP1-213ENST00000496622 SMTNL2Q2TAL5 461 aa6.41□□□□□ -1.38
SSBP1-213ENST00000496622 PABPC1LQ4VXU2 614 aaKnown RBP6.41□□□□□ -1.38
SSBP1-213ENST00000496622 KCNT1Q5JUK3 1230 aa6.41□□□□□ -1.38
SSBP1-213ENST00000496622 MON1BQ7L1V2 547 aa6.41□□□□□ -1.38
SSBP1-213ENST00000496622 ACOT1Q86TX2 421 aa6.41□□□□□ -1.38
SSBP1-213ENST00000496622 LURAP1LQ8IV03 231 aa6.41□□□□□ -1.38
SSBP1-213ENST00000496622 GDAP1Q8TB36 358 aa6.41□□□□□ -1.38
SSBP1-213ENST00000496622 NANOS1Q8WY41 292 aaKnown RBP6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms