RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 STX16-NPEPL1H3BU86 382 aa12.06□□□□□ -0.48
HDAC4-210ENST00000493582 K7EPI3 171 aa12.06□□□□□ -0.48
HDAC4-210ENST00000493582 ZNF195O14628 629 aa12.06□□□□□ -0.48
HDAC4-210ENST00000493582 NDUFB10O96000 172 aa12.06□□□□□ -0.48
HDAC4-210ENST00000493582 HLA-DRAP01903 254 aa12.06□□□□□ -0.48
HDAC4-210ENST00000493582 YWHAZP63104 245 aaKnown RBP12.06□□□□□ -0.48
HDAC4-210ENST00000493582 TCP10Q12799 353 aa12.06□□□□□ -0.48
HDAC4-210ENST00000493582 ATP1A4Q13733 1029 aa12.06□□□□□ -0.48
HDAC4-210ENST00000493582 TAF5Q15542 800 aa12.06□□□□□ -0.48
HDAC4-210ENST00000493582 SMAD1Q15797 465 aaKnown RBP12.06□□□□□ -0.48
HDAC4-210ENST00000493582 AOC3Q16853 763 aa12.06□□□□□ -0.48
HDAC4-210ENST00000493582 ABCB5Q2M3G0 1257 aa12.06□□□□□ -0.48
HDAC4-210ENST00000493582 MAP7D1Q3KQU3 841 aa12.06□□□□□ -0.48
HDAC4-210ENST00000493582 SCARA3Q6AZY7 606 aa12.06□□□□□ -0.48
HDAC4-210ENST00000493582 XKR5Q6UX68 686 aa12.06□□□□□ -0.48
HDAC4-210ENST00000493582 PTAR1Q7Z6K3 402 aaPredicted RBP12.06□□□□□ -0.48
HDAC4-210ENST00000493582 LINC00116Q8NCU8 138 aa12.06□□□□□ -0.48
HDAC4-210ENST00000493582 CATSPER1Q8NEC5 780 aa12.06□□□□□ -0.48
HDAC4-210ENST00000493582 EME1Q96AY2 570 aa12.06□□□□□ -0.48
HDAC4-210ENST00000493582 PPP1R36Q96LQ0 422 aa12.06□□□□□ -0.48
HDAC4-210ENST00000493582 SORT1Q99523 831 aa12.06□□□□□ -0.48
HDAC4-210ENST00000493582 TBC1D23Q9NUY8 699 aa12.06□□□□□ -0.48
HDAC4-210ENST00000493582 TRNAU1APQ9NX07 287 aaKnown RBP12.06□□□□□ -0.48
HDAC4-210ENST00000493582 DDX56Q9NY93 547 aaKnown RBP12.06□□□□□ -0.48
HDAC4-210ENST00000493582 CDC14AQ9UNH5 594 aa12.06□□□□□ -0.48
HDAC4-210ENST00000493582 SBF2Q86WG5 1849 aa12.06□□□□□ -0.48
HDAC4-210ENST00000493582 E2F8A0AVK6 867 aa12.06□□□□□ -0.48
HDAC4-210ENST00000493582 ARHGEF37A1IGU5 675 aa12.06□□□□□ -0.48
HDAC4-210ENST00000493582 RNASEH2AO75792 299 aaKnown RBP12.06□□□□□ -0.48
HDAC4-210ENST00000493582 ZBED1O96006 694 aa12.06□□□□□ -0.48
HDAC4-210ENST00000493582 ZNF26P17031 533 aaPredicted RBP12.06□□□□□ -0.48
HDAC4-210ENST00000493582 ACAT1P24752 427 aaKnown RBP12.06□□□□□ -0.48
HDAC4-210ENST00000493582 PTPN7P35236 360 aa12.06□□□□□ -0.48
HDAC4-210ENST00000493582 TMED10P49755 219 aaKnown RBP12.06□□□□□ -0.48
HDAC4-210ENST00000493582 CACNB3P54284 484 aa12.06□□□□□ -0.48
HDAC4-210ENST00000493582 N4BP2L1Q5TBK1 243 aaPredicted RBP12.06□□□□□ -0.48
HDAC4-210ENST00000493582 DARS2Q6PI48 645 aaKnown RBP12.06□□□□□ -0.48
HDAC4-210ENST00000493582 TRIM72Q6ZMU5 477 aa12.06□□□□□ -0.48
HDAC4-210ENST00000493582 BBS12Q6ZW61 710 aa12.06□□□□□ -0.48
HDAC4-210ENST00000493582 RFX6Q8HWS3 928 aa12.06□□□□□ -0.48
HDAC4-210ENST00000493582 C10orf107Q8IVU9 208 aa12.06□□□□□ -0.48
HDAC4-210ENST00000493582 CHERPQ8IWX8 916 aaKnown RBP12.06□□□□□ -0.48
HDAC4-210ENST00000493582 FAM156AQ8NDB6 213 aa12.06□□□□□ -0.48
HDAC4-210ENST00000493582 ZSCAN18Q8TBC5 510 aaPredicted RBP12.06□□□□□ -0.48
HDAC4-210ENST00000493582 ZNF606Q8WXB4 792 aa12.06□□□□□ -0.48
HDAC4-210ENST00000493582 HEPHQ9BQS7 1158 aa12.06□□□□□ -0.48
HDAC4-210ENST00000493582 APOBEC3GQ9HC16 384 aaKnown RBP12.06□□□□□ -0.48
HDAC4-210ENST00000493582 EMCNQ9ULC0 261 aa12.06□□□□□ -0.48
HDAC4-210ENST00000493582 EXOC7Q9UPT5 735 aa12.06□□□□□ -0.48
HDAC4-210ENST00000493582 PIK3R2O00459 728 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 TPD52L2O43399 206 aaKnown RBP12.05□□□□□ -0.48
HDAC4-210ENST00000493582 KCNQ2O43526 872 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 FAM189A1O60320 539 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 SPAG6O75602 509 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 CSPG5O95196 566 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 BCAP31P51572 246 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 SLC10A2Q12908 348 aaPredicted RBP12.05□□□□□ -0.48
HDAC4-210ENST00000493582 KCNJ11Q14654 390 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 ZNF394Q53GI3 561 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 NANOGP8Q6NSW7 305 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 B3GNT9Q6UX72 402 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 CCDC80Q76M96 950 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 MYO1HQ8N1T3 1032 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 ARFGAP1Q8N6T3 406 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 TMEM161BQ8NDZ6 487 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 C12orf43Q96C57 262 aaKnown RBP12.05□□□□□ -0.48
HDAC4-210ENST00000493582 KLHL32Q96NJ5 620 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 INO80BQ9C086 356 aaPredicted RBP12.05□□□□□ -0.48
HDAC4-210ENST00000493582 POPDC2Q9HBU9 364 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 SLC17A6Q9P2U8 582 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 WDR46O15213 610 aaKnown RBP12.05□□□□□ -0.48
HDAC4-210ENST00000493582 SPTLC1O15269 473 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 GDF11O95390 407 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 ZBTB11O95625 1053 aaPredicted RBP12.05□□□□□ -0.48
HDAC4-210ENST00000493582 HLA-DOAP06340 250 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 IL1R1P14778 569 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 FGFR3P22607 806 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 KDELR1P24390 212 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 RFC1P35251 1148 aaPredicted RBP12.05□□□□□ -0.48
HDAC4-210ENST00000493582 CUL2Q13617 745 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 KIAA0319LQ8IZA0 1049 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 UNC5BQ8IZJ1 945 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 CENPSQ8N2Z9 138 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 ISOC1Q96CN7 298 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 PGBD4Q96DM1 585 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 GPATCH1Q9BRR8 931 aaKnown RBP12.05□□□□□ -0.48
HDAC4-210ENST00000493582 TMEM79Q9BSE2 394 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 RTKNQ9BST9 563 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 CALN1Q9BXU9 219 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 GCOM2Q9BZD3 368 aaPredicted RBP12.05□□□□□ -0.48
HDAC4-210ENST00000493582 RNPEPQ9H4A4 650 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 COQ10BQ9H8M1 238 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 COG4Q9H9E3 785 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 PNPLA8Q9NP80 782 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 OLAHQ9NV23 265 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 IGSF9Q9P2J2 1179 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 TSC22D4Q9Y3Q8 395 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 FADS3Q9Y5Q0 445 aa12.05□□□□□ -0.48
HDAC4-210ENST00000493582 XIRP1Q702N8 1843 aaKnown RBP12.04□□□□□ -0.48
HDAC4-210ENST00000493582 GOLGA8QA0A0J9YX86 632 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms