RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 TMEM225BP0DP42 221 aa5.09□□□□□ -1.59
VPS13A-212ENST00000493341 IRAK1P51617 712 aa5.09□□□□□ -1.59
VPS13A-212ENST00000493341 GP2P55259 537 aaKnown RBP5.09□□□□□ -1.59
VPS13A-212ENST00000493341 CDH15P55291 814 aa5.09□□□□□ -1.59
VPS13A-212ENST00000493341 SP2Q02086 613 aa5.09□□□□□ -1.59
VPS13A-212ENST00000493341 PTP4A2Q12974 167 aa5.09□□□□□ -1.59
VPS13A-212ENST00000493341 RASA2Q15283 850 aa5.09□□□□□ -1.59
VPS13A-212ENST00000493341 AAK1Q2M2I8 961 aa5.09□□□□□ -1.59
VPS13A-212ENST00000493341 SLC9A4Q6AI14 798 aa5.09□□□□□ -1.59
VPS13A-212ENST00000493341 KIAA1324Q6UXG2 1013 aaKnown RBP5.09□□□□□ -1.59
VPS13A-212ENST00000493341 IZUMO1Q8IYV9 350 aa5.09□□□□□ -1.59
VPS13A-212ENST00000493341 OR56A1Q8NGH5 318 aa5.09□□□□□ -1.59
VPS13A-212ENST00000493341 ATP2A3Q93084 1043 aa5.09□□□□□ -1.59
VPS13A-212ENST00000493341 ARRDC3Q96B67 414 aa5.09□□□□□ -1.59
VPS13A-212ENST00000493341 ELP4Q96EB1 424 aa5.09□□□□□ -1.59
VPS13A-212ENST00000493341 LRRC37BQ96QE4 947 aa5.09□□□□□ -1.59
VPS13A-212ENST00000493341 RANBP17Q9H2T7 1088 aaKnown RBP5.09□□□□□ -1.59
VPS13A-212ENST00000493341 HCFC1R1Q9NWW0 138 aa5.09□□□□□ -1.59
VPS13A-212ENST00000493341 CEP72Q9P209 647 aa5.09□□□□□ -1.59
VPS13A-212ENST00000493341 HECAQ9UBI9 543 aaPredicted RBP5.09□□□□□ -1.59
VPS13A-212ENST00000493341 NKX1-2Q9UD57 310 aaPredicted RBP5.09□□□□□ -1.59
VPS13A-212ENST00000493341 SLC12A4Q9UP95 1085 aa5.09□□□□□ -1.59
VPS13A-212ENST00000493341 UBE2J1Q9Y385 318 aaPredicted RBP5.09□□□□□ -1.59
VPS13A-212ENST00000493341 RPGRIP1LQ68CZ1 1315 aa5.09□□□□□ -1.59
VPS13A-212ENST00000493341 A0A1B0GTW7 788 aa5.09□□□□□ -1.6
VPS13A-212ENST00000493341 MROH6A6NGR9 719 aa5.09□□□□□ -1.6
VPS13A-212ENST00000493341 NPIPB15A6NHN6 443 aaPredicted RBP5.09□□□□□ -1.6
VPS13A-212ENST00000493341 LEFTY2O00292 366 aa5.09□□□□□ -1.6
VPS13A-212ENST00000493341 TRIAP1O43715 76 aa5.09□□□□□ -1.6
VPS13A-212ENST00000493341 DHX16O60231 1041 aaKnown RBP5.09□□□□□ -1.6
VPS13A-212ENST00000493341 ERAL1O75616 437 aaKnown RBP5.09□□□□□ -1.6
VPS13A-212ENST00000493341 ADRB2P07550 413 aa5.09□□□□□ -1.6
VPS13A-212ENST00000493341 PSMA4P25789 261 aaKnown RBP5.09□□□□□ -1.6
VPS13A-212ENST00000493341 ITGB7P26010 798 aa5.09□□□□□ -1.6
VPS13A-212ENST00000493341 PCP4P48539 62 aa5.09□□□□□ -1.6
VPS13A-212ENST00000493341 ANXA11P50995 505 aaKnown RBP5.09□□□□□ -1.6
VPS13A-212ENST00000493341 NHLH2Q02577 135 aa5.09□□□□□ -1.6
VPS13A-212ENST00000493341 FPGSQ05932 587 aa5.09□□□□□ -1.6
VPS13A-212ENST00000493341 MLANAQ16655 118 aa5.09□□□□□ -1.6
VPS13A-212ENST00000493341 FAM102AQ5T9C2 384 aaPredicted RBP5.09□□□□□ -1.6
VPS13A-212ENST00000493341 FAM47EQ6ZV65 393 aa5.09□□□□□ -1.6
VPS13A-212ENST00000493341 CBLL1Q75N03 491 aa5.09□□□□□ -1.6
VPS13A-212ENST00000493341 CLNKQ7Z7G1 428 aa5.09□□□□□ -1.6
VPS13A-212ENST00000493341 CREBRFQ8IUR6 639 aa5.09□□□□□ -1.6
VPS13A-212ENST00000493341 P3H2Q8IVL5 708 aa5.09□□□□□ -1.6
VPS13A-212ENST00000493341 SNX19Q92543 992 aa5.09□□□□□ -1.6
VPS13A-212ENST00000493341 FAR2Q96K12 515 aa5.09□□□□□ -1.6
VPS13A-212ENST00000493341 LENG8Q96PV6 779 aaPredicted RBP5.09□□□□□ -1.6
VPS13A-212ENST00000493341 FMNL2Q96PY5 1086 aa5.09□□□□□ -1.6
VPS13A-212ENST00000493341 SLC25A10Q9UBX3 287 aaPredicted RBP5.09□□□□□ -1.6
VPS13A-212ENST00000493341 LYVE1Q9Y5Y7 322 aa5.09□□□□□ -1.6
VPS13A-212ENST00000493341 SH3D21A4FU49 640 aa5.08□□□□□ -1.6
VPS13A-212ENST00000493341 AGAP14A8MT82 685 aa5.08□□□□□ -1.6
VPS13A-212ENST00000493341 E7ENX8 843 aa5.08□□□□□ -1.6
VPS13A-212ENST00000493341 M0QZQ0 153 aa5.08□□□□□ -1.6
VPS13A-212ENST00000493341 SYN3O14994 580 aa5.08□□□□□ -1.6
VPS13A-212ENST00000493341 CD19P15391 556 aa5.08□□□□□ -1.6
VPS13A-212ENST00000493341 PI3P19957 117 aa5.08□□□□□ -1.6
VPS13A-212ENST00000493341 FGFR4P22455 802 aa5.08□□□□□ -1.6
VPS13A-212ENST00000493341 GRK5P34947 590 aa5.08□□□□□ -1.6
VPS13A-212ENST00000493341 DPP6P42658 865 aa5.08□□□□□ -1.6
VPS13A-212ENST00000493341 RCAN1P53805 252 aa5.08□□□□□ -1.6
VPS13A-212ENST00000493341 TIRAPP58753 221 aa5.08□□□□□ -1.6
VPS13A-212ENST00000493341 EIF4A1P60842 406 aaKnown RBP5.08□□□□□ -1.6
VPS13A-212ENST00000493341 RPL15P61313 204 aaKnown RBP5.08□□□□□ -1.6
VPS13A-212ENST00000493341 TAP2Q03519 686 aa5.08□□□□□ -1.6
VPS13A-212ENST00000493341 TUBB3Q13509 450 aa5.08□□□□□ -1.6
VPS13A-212ENST00000493341 DYRK1AQ13627 763 aa5.08□□□□□ -1.6
VPS13A-212ENST00000493341 SSPNQ14714 243 aa5.08□□□□□ -1.6
VPS13A-212ENST00000493341 CLCA4Q14CN2 919 aa5.08□□□□□ -1.6
VPS13A-212ENST00000493341 NAA25Q14CX7 972 aa5.08□□□□□ -1.6
VPS13A-212ENST00000493341 MED22Q15528 200 aa5.08□□□□□ -1.6
VPS13A-212ENST00000493341 TBC1D10BQ4KMP7 808 aaPredicted RBP5.08□□□□□ -1.6
VPS13A-212ENST00000493341 KRT74Q7RTS7 529 aa5.08□□□□□ -1.6
VPS13A-212ENST00000493341 TMPRSS9Q7Z410 1059 aa5.08□□□□□ -1.6
VPS13A-212ENST00000493341 FAM124AQ86V42 546 aa5.08□□□□□ -1.6
VPS13A-212ENST00000493341 VSIG1Q86XK7 387 aa5.08□□□□□ -1.6
VPS13A-212ENST00000493341 RAB11FIP4Q86YS3 637 aa5.08□□□□□ -1.6
VPS13A-212ENST00000493341 SUPT20HQ8NEM7 779 aa5.08□□□□□ -1.6
VPS13A-212ENST00000493341 ATG4AQ8WYN0 398 aa5.08□□□□□ -1.6
VPS13A-212ENST00000493341 NPIPB3Q92617 1050 aa5.08□□□□□ -1.6
VPS13A-212ENST00000493341 MASTLQ96GX5 879 aa5.08□□□□□ -1.6
VPS13A-212ENST00000493341 FEM1CQ96JP0 617 aa5.08□□□□□ -1.6
VPS13A-212ENST00000493341 CNDP2Q96KP4 475 aaKnown RBP5.08□□□□□ -1.6
VPS13A-212ENST00000493341 DPCDQ9BVM2 203 aaPredicted RBP5.08□□□□□ -1.6
VPS13A-212ENST00000493341 PDE11AQ9HCR9 933 aa5.08□□□□□ -1.6
VPS13A-212ENST00000493341 BEX4Q9NWD9 120 aaPredicted RBP5.08□□□□□ -1.6
VPS13A-212ENST00000493341 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.08□□□□□ -1.6
VPS13A-212ENST00000493341 ZHX1Q9UKY1 873 aaPredicted RBP5.08□□□□□ -1.6
VPS13A-212ENST00000493341 SARDHQ9UL12 918 aa5.08□□□□□ -1.6
VPS13A-212ENST00000493341 SH3BP1Q9Y3L3 701 aa5.08□□□□□ -1.6
VPS13A-212ENST00000493341 NEU2Q9Y3R4 380 aa5.08□□□□□ -1.6
VPS13A-212ENST00000493341 MBD3L5A6NJ08 208 aaPredicted RBP5.07□□□□□ -1.6
VPS13A-212ENST00000493341 H7C0S8 307 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 MASP2O00187 686 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 TGFB1I1O43294 461 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 TNFSF14O43557 240 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 RECQL4O94761 1208 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 CCNDBP1O95273 360 aa5.07□□□□□ -1.6
VPS13A-212ENST00000493341 ERBB2P04626 1255 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms