RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 FPR3P25089 353 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 ADRA1DP25100 572 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 EPHB2P29323 1055 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 MPGP29372 298 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 PIK3CBP42338 1070 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 STT3AP46977 705 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 RENBPP51606 427 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 PROK1P58294 105 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 EIF4A1P60842 406 aaKnown RBP2.55□□□□□ -2
HMGB1-208ENST00000490788 IRX6P78412 446 aaPredicted RBP2.55□□□□□ -2
HMGB1-208ENST00000490788 TIAL1Q01085 375 aaKnown RBP eCLIP2.55□□□□□ -2
HMGB1-208ENST00000490788 ZNF543Q08ER8 600 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 FOXF2Q12947 444 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 GPS1Q13098 491 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 ZNF268Q14587 947 aaPredicted RBP2.55□□□□□ -2
HMGB1-208ENST00000490788 KCNB1Q14721 858 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 FAM187BQ17R55 369 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 FAXCQ5TGI0 409 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 EFCAB6Q5THR3 1501 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 FCRL6Q6DN72 434 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 FBXO38Q6PIJ6 1188 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 ZNF782Q6ZMW2 699 aaPredicted RBP2.55□□□□□ -2
HMGB1-208ENST00000490788 KIF27Q86VH2 1401 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 TTC30AQ86WT1 665 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 CHSY1Q86X52 802 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 SAMD9LQ8IVG5 1584 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 SRRM1Q8IYB3 904 aaKnown RBP2.55□□□□□ -2
HMGB1-208ENST00000490788 TXLNBQ8N3L3 684 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 VGLL2Q8N8G2 317 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 FAM71DQ8N9W8 422 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 NTN5Q8WTR8 489 aaPredicted RBP2.55□□□□□ -2
HMGB1-208ENST00000490788 ABHD5Q8WTS1 349 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 RREB1Q92766 1687 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 PMM1Q92871 262 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 CUL5Q93034 780 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 REPS1Q96D71 796 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 TNIP3Q96KP6 325 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 C5orf34Q96MH7 638 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 TBCBQ99426 244 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 EIF3CQ99613 913 aaKnown RBP2.55□□□□□ -2
HMGB1-208ENST00000490788 FAM118BQ9BPY3 351 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 EIF2AQ9BY44 585 aaKnown RBP2.55□□□□□ -2
HMGB1-208ENST00000490788 STARD7Q9NQZ5 370 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 ARHGAP35Q9NRY4 1499 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 PI4KBQ9UBF8 816 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 DKK4Q9UBT3 224 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 LPAR3Q9UBY5 353 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 SERGEFQ9UGK8 458 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 CACNA1AO00555 2505 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 PDE4DIPQ5VU43 2346 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 CASZ1Q86V15 1759 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 SPAG9O60271 1321 aaKnown RBP2.54□□□□□ -2
HMGB1-208ENST00000490788 WDR17Q8IZU2 1322 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 LOC105378220A0A1B0GUY1 285 aaPredicted RBP2.54□□□□□ -2
HMGB1-208ENST00000490788 A8MVJ9 347 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 F8W8V4 182 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 AREL1O15033 823 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 ZSCAN9O15535 394 aaPredicted RBP2.54□□□□□ -2
HMGB1-208ENST00000490788 A1BGP04217 495 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 CELA2AP08217 269 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 MYL3P08590 195 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 PRR35P0CG20 571 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 HSPA8P11142 646 aaKnown RBP2.54□□□□□ -2
HMGB1-208ENST00000490788 NTSR1P30989 418 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 ATICP31939 592 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 GNALP38405 381 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 MMP13P45452 471 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 PRIM2P49643 509 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 DIO1P49895 249 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 DGKQP52824 942 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 COPAP53621 1224 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 TFF2Q03403 129 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 CCDC15Q0P6D6 951 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 LMAN2Q12907 356 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 GALEQ14376 348 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 CLCA4Q14CN2 919 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 PFKFB3Q16875 520 aaPredicted RBP2.54□□□□□ -2
HMGB1-208ENST00000490788 LONRF1Q17RB8 773 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 P3H1Q32P28 736 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 ARL13BQ3SXY8 428 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 GLIPR1L2Q4G1C9 344 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 RNASE12Q5GAN4 147 aaKnown RBP2.54□□□□□ -2
HMGB1-208ENST00000490788 MTX3Q5HYI7 312 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 MANEALQ5VSG8 457 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 KLHDC7AQ5VTJ3 777 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 SLC18B1Q6NT16 456 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 USP17L6PQ6QN14 398 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 CATSPERGQ6ZRH7 1159 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 DCDC5Q6ZRR9 648 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 YTHDF3Q7Z739 585 aaKnown RBP2.54□□□□□ -2
HMGB1-208ENST00000490788 DPP9Q86TI2 863 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 PNPLA1Q8N8W4 532 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 ACRBPQ8NEB7 543 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 PJA1Q8NG27 643 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 PRSS3P2Q8NHM4 247 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 MAFAQ8NHW3 353 aaPredicted RBP2.54□□□□□ -2
HMGB1-208ENST00000490788 MBD3L2Q8NHZ7 208 aaPredicted RBP2.54□□□□□ -2
HMGB1-208ENST00000490788 DENND1AQ8TEH3 1009 aa2.54□□□□□ -2
HMGB1-208ENST00000490788 SMG7Q92540 1137 aaKnown RBP2.54□□□□□ -2
HMGB1-208ENST00000490788 DPF1Q92782 380 aa2.54□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms