RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 KNTC1P50748 2209 aa14.68□□□□□ -0.06
VARS-227ENST00000489979 FAM149AA5PLN7 773 aa14.67□□□□□ -0.06
VARS-227ENST00000489979 HMBSP08397 361 aa14.67□□□□□ -0.06
VARS-227ENST00000489979 CHKAP35790 457 aa14.67□□□□□ -0.06
VARS-227ENST00000489979 NASPP49321 788 aaPredicted RBP14.67□□□□□ -0.06
VARS-227ENST00000489979 SUZ12Q15022 739 aaKnown RBP14.67□□□□□ -0.06
VARS-227ENST00000489979 STK38Q15208 465 aa14.67□□□□□ -0.06
VARS-227ENST00000489979 KNOP1Q1ED39 458 aaKnown RBP14.67□□□□□ -0.06
VARS-227ENST00000489979 SGSM1Q2NKQ1 1148 aa14.67□□□□□ -0.06
VARS-227ENST00000489979 KIF19Q2TAC6 998 aa14.67□□□□□ -0.06
VARS-227ENST00000489979 SPOPLQ6IQ16 392 aa14.67□□□□□ -0.06
VARS-227ENST00000489979 ANKS1BQ7Z6G8 1248 aa14.67□□□□□ -0.06
VARS-227ENST00000489979 SCD5Q86SK9 330 aa14.67□□□□□ -0.06
VARS-227ENST00000489979 GALNT15Q8N3T1 639 aa14.67□□□□□ -0.06
VARS-227ENST00000489979 IQUBQ8NA54 791 aa14.67□□□□□ -0.06
VARS-227ENST00000489979 SORCS1Q8WY21 1168 aa14.67□□□□□ -0.06
VARS-227ENST00000489979 PIWIL1Q96J94 861 aaKnown RBP14.67□□□□□ -0.06
VARS-227ENST00000489979 TWNKQ96RR1 684 aa14.67□□□□□ -0.06
VARS-227ENST00000489979 ELOVL2Q9NXB9 296 aa14.67□□□□□ -0.06
VARS-227ENST00000489979 RASAL2Q9UJF2 1139 aa14.67□□□□□ -0.06
VARS-227ENST00000489979 CLEC4EQ9ULY5 219 aa14.67□□□□□ -0.06
VARS-227ENST00000489979 SNX11Q9Y5W9 270 aa14.67□□□□□ -0.06
VARS-227ENST00000489979 SHROOM3Q8TF72 1996 aa14.67□□□□□ -0.06
VARS-227ENST00000489979 SETXQ7Z333 2677 aaKnown RBP14.67□□□□□ -0.06
VARS-227ENST00000489979 EPHX1P07099 455 aa14.66□□□□□ -0.06
VARS-227ENST00000489979 CORO1AP31146 461 aaKnown RBP14.66□□□□□ -0.06
VARS-227ENST00000489979 ASPAP45381 313 aa14.66□□□□□ -0.06
VARS-227ENST00000489979 AFF3P51826 1226 aaKnown RBP14.66□□□□□ -0.06
VARS-227ENST00000489979 KIF11P52732 1056 aa14.66□□□□□ -0.06
VARS-227ENST00000489979 DLG4P78352 724 aa14.66□□□□□ -0.06
VARS-227ENST00000489979 CAMK2BQ13554 666 aa14.66□□□□□ -0.06
VARS-227ENST00000489979 CCDC157Q569K6 752 aa14.66□□□□□ -0.06
VARS-227ENST00000489979 TADA2BQ86TJ2 420 aa14.66□□□□□ -0.06
VARS-227ENST00000489979 RBBP8NLQ8NC74 664 aaPredicted RBP14.66□□□□□ -0.06
VARS-227ENST00000489979 LINC00301Q8NCQ3 95 aa14.66□□□□□ -0.06
VARS-227ENST00000489979 CYFIP2Q96F07 1278 aa14.66□□□□□ -0.06
VARS-227ENST00000489979 CIPCQ9C0C6 399 aa14.66□□□□□ -0.06
VARS-227ENST00000489979 BLZF1Q9H2G9 400 aa14.66□□□□□ -0.06
VARS-227ENST00000489979 C6orf106Q9H6K1 298 aaPredicted RBP14.66□□□□□ -0.06
VARS-227ENST00000489979 PNPLA8Q9NP80 782 aa14.66□□□□□ -0.06
VARS-227ENST00000489979 HELZ2Q9BYK8 2649 aaKnown RBP14.65□□□□□ -0.06
VARS-227ENST00000489979 A0A087WV48 116 aa14.65□□□□□ -0.06
VARS-227ENST00000489979 KCNK3O14649 394 aa14.65□□□□□ -0.06
VARS-227ENST00000489979 SPTLC2O15270 562 aa14.65□□□□□ -0.06
VARS-227ENST00000489979 TNFSF14O43557 240 aa14.65□□□□□ -0.06
VARS-227ENST00000489979 STX6O43752 255 aa14.65□□□□□ -0.06
VARS-227ENST00000489979 RPN1P04843 607 aaKnown RBP14.65□□□□□ -0.06
VARS-227ENST00000489979 RALAP11233 206 aa14.65□□□□□ -0.06
VARS-227ENST00000489979 HLA-EP13747 358 aa14.65□□□□□ -0.06
VARS-227ENST00000489979 PSEN1P49768 467 aa14.65□□□□□ -0.06
VARS-227ENST00000489979 COG7P83436 770 aa14.65□□□□□ -0.06
VARS-227ENST00000489979 EFEMP1Q12805 493 aa14.65□□□□□ -0.06
VARS-227ENST00000489979 E2F5Q15329 346 aa14.65□□□□□ -0.06
VARS-227ENST00000489979 ZACNQ401N2 412 aa14.65□□□□□ -0.06
VARS-227ENST00000489979 TMEM215Q68D42 235 aa14.65□□□□□ -0.06
VARS-227ENST00000489979 SERPINA13PQ6UXR4 307 aa14.65□□□□□ -0.06
VARS-227ENST00000489979 CCDC186Q7Z3E2 898 aa14.65□□□□□ -0.06
VARS-227ENST00000489979 SCUBE3Q8IX30 993 aa14.65□□□□□ -0.06
VARS-227ENST00000489979 ZNF276Q8N554 614 aa14.65□□□□□ -0.06
VARS-227ENST00000489979 OR2T3Q8NH03 318 aa14.65□□□□□ -0.06
VARS-227ENST00000489979 TAF4BQ92750 862 aa14.65□□□□□ -0.06
VARS-227ENST00000489979 DCLK3Q9C098 648 aa14.65□□□□□ -0.06
VARS-227ENST00000489979 PCED1AQ9H1Q7 454 aa14.65□□□□□ -0.06
VARS-227ENST00000489979 AGO1Q9UL18 857 aaKnown RBP14.65□□□□□ -0.06
VARS-227ENST00000489979 MTMR6Q9Y217 621 aa14.65□□□□□ -0.06
VARS-227ENST00000489979 ANKRD6Q9Y2G4 727 aa14.65□□□□□ -0.06
VARS-227ENST00000489979 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.64□□□□□ -0.07
VARS-227ENST00000489979 KIF20AO95235 890 aa14.64□□□□□ -0.07
VARS-227ENST00000489979 ASS1P00966 412 aaKnown RBP14.64□□□□□ -0.07
VARS-227ENST00000489979 CYBBP04839 570 aa14.64□□□□□ -0.07
VARS-227ENST00000489979 TRIM21P19474 475 aaKnown RBP14.64□□□□□ -0.07
VARS-227ENST00000489979 ACSL1P33121 698 aa14.64□□□□□ -0.07
VARS-227ENST00000489979 ARID5AQ03989 594 aa14.64□□□□□ -0.07
VARS-227ENST00000489979 EIF4HQ15056 248 aaKnown RBP14.64□□□□□ -0.07
VARS-227ENST00000489979 TEAD4Q15561 434 aa14.64□□□□□ -0.07
VARS-227ENST00000489979 SMAD1Q15797 465 aaKnown RBP14.64□□□□□ -0.07
VARS-227ENST00000489979 PTPRNQ16849 979 aa14.64□□□□□ -0.07
VARS-227ENST00000489979 DHRS13Q6UX07 377 aa14.64□□□□□ -0.07
VARS-227ENST00000489979 LAYNQ6UX15 382 aa14.64□□□□□ -0.07
VARS-227ENST00000489979 DENND1CQ8IV53 801 aa14.64□□□□□ -0.07
VARS-227ENST00000489979 PDCD7Q8N8D1 485 aaKnown RBP14.64□□□□□ -0.07
VARS-227ENST00000489979 GOLGA5Q8TBA6 731 aa14.64□□□□□ -0.07
VARS-227ENST00000489979 ADAM32Q8TC27 787 aa14.64□□□□□ -0.07
VARS-227ENST00000489979 DDI1Q8WTU0 396 aa14.64□□□□□ -0.07
VARS-227ENST00000489979 DCBLD2Q96PD2 775 aa14.64□□□□□ -0.07
VARS-227ENST00000489979 CDK5RAP1Q96SZ6 601 aaKnown RBP14.64□□□□□ -0.07
VARS-227ENST00000489979 NT5C1AQ9BXI3 368 aa14.64□□□□□ -0.07
VARS-227ENST00000489979 LHX5Q9H2C1 402 aa14.64□□□□□ -0.07
VARS-227ENST00000489979 UPF2Q9HAU5 1272 aaKnown RBP14.64□□□□□ -0.07
VARS-227ENST00000489979 TM9SF3Q9HD45 589 aa14.64□□□□□ -0.07
VARS-227ENST00000489979 DMAC2Q9NW81 257 aa14.64□□□□□ -0.07
VARS-227ENST00000489979 CLIC5Q9NZA1 410 aa14.64□□□□□ -0.07
VARS-227ENST00000489979 ZBTB32Q9Y2Y4 487 aaPredicted RBP14.64□□□□□ -0.07
VARS-227ENST00000489979 USP3Q9Y6I4 520 aa14.64□□□□□ -0.07
VARS-227ENST00000489979 FLNBO75369 2602 aaKnown RBP14.63□□□□□ -0.07
VARS-227ENST00000489979 POLR2DO15514 142 aaKnown RBP14.63□□□□□ -0.07
VARS-227ENST00000489979 TIMM44O43615 452 aa14.63□□□□□ -0.07
VARS-227ENST00000489979 PPP6R2O75170 966 aa14.63□□□□□ -0.07
VARS-227ENST00000489979 HLA-DRAP01903 254 aa14.63□□□□□ -0.07
VARS-227ENST00000489979 PIK3CAP42336 1068 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms