RNA–Protein interactions for RNA: ENST00000489247.1

ATG4A-208, Transcript of autophagy related 4A cysteine peptidase, human

TSL 2

Gene ATG4A, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATG4A-208	ENST00000489247	EXD1	Q8NHP7	514 aa		5.84	□□□□□ -1.47
ATG4A-208	ENST00000489247	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	5.84	□□□□□ -1.47
ATG4A-208	ENST00000489247	FAM71B	Q8TC56	605 aa		5.84	□□□□□ -1.47
ATG4A-208	ENST00000489247	TMEM40	Q8WWA1	233 aa		5.84	□□□□□ -1.47
ATG4A-208	ENST00000489247	CASKIN2	Q8WXE0	1202 aa		5.84	□□□□□ -1.47
ATG4A-208	ENST00000489247	TRIB2	Q92519	343 aa		5.84	□□□□□ -1.47
ATG4A-208	ENST00000489247	TMEM176A	Q96HP8	235 aa		5.84	□□□□□ -1.47
ATG4A-208	ENST00000489247	HPDL	Q96IR7	371 aa		5.84	□□□□□ -1.47
ATG4A-208	ENST00000489247	ZMAT2	Q96NC0	199 aa	Known RBP	5.84	□□□□□ -1.47
ATG4A-208	ENST00000489247	SH3GL2	Q99962	352 aa		5.84	□□□□□ -1.47
ATG4A-208	ENST00000489247	DPH2	Q9BQC3	489 aa	Predicted RBP	5.84	□□□□□ -1.47
ATG4A-208	ENST00000489247	C11orf70	Q9BRQ4	267 aa		5.84	□□□□□ -1.47
ATG4A-208	ENST00000489247	ERP44	Q9BS26	406 aa		5.84	□□□□□ -1.47
ATG4A-208	ENST00000489247	TXLNGY	Q9BZA5	131 aa		5.84	□□□□□ -1.47
ATG4A-208	ENST00000489247	SENP6	Q9GZR1	1112 aa	Predicted RBP	5.84	□□□□□ -1.47
ATG4A-208	ENST00000489247	ELOVL4	Q9GZR5	314 aa		5.84	□□□□□ -1.47
ATG4A-208	ENST00000489247	MIS12	Q9H081	205 aa		5.84	□□□□□ -1.47
ATG4A-208	ENST00000489247	SMYD3	Q9H7B4	428 aa		5.84	□□□□□ -1.47
ATG4A-208	ENST00000489247	EPB41L5	Q9HCM4	733 aa		5.84	□□□□□ -1.47
ATG4A-208	ENST00000489247	PRDM10	Q9NQV6	1147 aa		5.84	□□□□□ -1.47
ATG4A-208	ENST00000489247	CHST12	Q9NRB3	414 aa		5.84	□□□□□ -1.47
ATG4A-208	ENST00000489247	FAM114A2	Q9NRY5	505 aa		5.84	□□□□□ -1.47
ATG4A-208	ENST00000489247	HOMER3	Q9NSC5	361 aa		5.84	□□□□□ -1.47
ATG4A-208	ENST00000489247	GDAP2	Q9NXN4	497 aa		5.84	□□□□□ -1.47
ATG4A-208	ENST00000489247	DPP3	Q9NY33	737 aa		5.84	□□□□□ -1.47
ATG4A-208	ENST00000489247	PRKAG3	Q9UGI9	489 aa		5.84	□□□□□ -1.47
ATG4A-208	ENST00000489247	GTF2IRD1	Q9UHL9	959 aa		5.84	□□□□□ -1.47
ATG4A-208	ENST00000489247	UBQLN1	Q9UMX0	589 aa	Known RBP	5.84	□□□□□ -1.47
ATG4A-208	ENST00000489247	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	5.84	□□□□□ -1.47
ATG4A-208	ENST00000489247	SBDS	Q9Y3A5	250 aa	Known RBP eCLIP	5.84	□□□□□ -1.47
ATG4A-208	ENST00000489247	NR2E1	Q9Y466	385 aa		5.84	□□□□□ -1.47
ATG4A-208	ENST00000489247	CEP83	Q9Y592	693 aa		5.84	□□□□□ -1.47
ATG4A-208	ENST00000489247	OAS3	Q9Y6K5	1087 aa	Known RBP	5.84	□□□□□ -1.47
ATG4A-208	ENST00000489247	MCM3AP	O60318	1980 aa		5.84	□□□□□ -1.48
ATG4A-208	ENST00000489247	MYADML2	A6NDP7	307 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247		H3BQF6	201 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	AGPS	O00116	658 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	PODXL	O00592	558 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	INPPL1	O15357	1258 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	KLF4	O43474	513 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	XPOT	O43592	962 aa	Known RBP	5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	CAND2	O75155	1236 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	CSDE1	O75534	798 aa	Known RBP	5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	RECQL4	O94761	1208 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	SLITRK5	O94991	958 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	NPTXR	O95502	500 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	CALCA	P01258	141 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	MYL3	P08590	195 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	IMPDH2	P12268	514 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	PAX3	P23760	479 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	GPD2	P43304	727 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	CARS	P49589	748 aa	Known RBP	5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	FLT3LG	P49771	235 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	DNA2	P51530	1060 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	YARS	P54577	528 aa	Known RBP	5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	OSTN	P61366	133 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	MRPS6	P82932	125 aa	Known RBP	5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	SLC7A5	Q01650	507 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	GUCY2D	Q02846	1103 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	PIGH	Q14442	188 aa	Predicted RBP	5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	MSMP	Q1L6U9	139 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	PTPN20	Q4JDL3	420 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	EMC10	Q5UCC4	262 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	PRAMEF13	Q5VWM6	474 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	C9orf57	Q5W0N0	161 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	DENND1B	Q6P3S1	775 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	DNAJC24	Q6P3W2	148 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	LRIG3	Q6UXM1	1119 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	FAM214B	Q7L5A3	538 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	MRPL10	Q7Z7H8	261 aa	Known RBP	5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	FAM228A	Q86W67	206 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	VSIG1	Q86XK7	387 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	XYLT1	Q86Y38	959 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	CPNE8	Q86YQ8	564 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	JAML	Q86YT9	394 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	CRYBG2	Q8N1P7	616 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	RIN3	Q8TB24	985 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	SPATA18	Q8TC71	538 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	DNAJB3	Q8WWF6	145 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	ACSF2	Q96CM8	615 aa	Predicted RBP	5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	ZNF668	Q96K58	619 aa	Predicted RBP	5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	HEXIM2	Q96MH2	286 aa	Known RBP	5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	SCLT1	Q96NL6	688 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	TWNK	Q96RR1	684 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	AP1M1	Q9BXS5	423 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	EIF2A	Q9BY44	585 aa	Known RBP	5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	FRMD8P1	Q9BZ68	369 aa	Predicted RBP	5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	CELF4	Q9BZC1	486 aa	Known RBP	5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	FOXQ1	Q9C009	403 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	TRIM7	Q9C029	511 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	FAM49A	Q9H0Q0	323 aa	Predicted RBP	5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	DDX47	Q9H0S4	455 aa	Known RBP	5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	RAB17	Q9H0T7	212 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	SPC25	Q9HBM1	224 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	ERVK-5	Q9HDB9	667 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	ZDHHC18	Q9NUE0	388 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	SNTG2	Q9NY99	539 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	PSD3	Q9NYI0	1048 aa		5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	ZC3H7B	Q9UGR2	993 aa	Known RBP	5.83	□□□□□ -1.48
ATG4A-208	ENST00000489247	KLHL3	Q9UH77	587 aa		5.83	□□□□□ -1.48

Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms