RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 FAM204AQ9H8W3 233 aa15.38■□□□□ 0.05
USP4-212ENST00000486549 ASNSD1Q9NWL6 643 aa15.38■□□□□ 0.05
USP4-212ENST00000486549 PLK2Q9NYY3 685 aa15.38■□□□□ 0.05
USP4-212ENST00000486549 COX16Q9P0S2 106 aa15.38■□□□□ 0.05
USP4-212ENST00000486549 PRR23AA6NEV1 266 aa15.37■□□□□ 0.05
USP4-212ENST00000486549 HOXC11O43248 304 aaPredicted RBP15.37■□□□□ 0.05
USP4-212ENST00000486549 DAB1O75553 588 aa15.37■□□□□ 0.05
USP4-212ENST00000486549 TRUB2O95900 331 aaKnown RBP15.37■□□□□ 0.05
USP4-212ENST00000486549 CYP1A1P04798 512 aaPredicted RBP15.37■□□□□ 0.05
USP4-212ENST00000486549 GLI1P08151 1106 aa15.37■□□□□ 0.05
USP4-212ENST00000486549 CCDC172P0C7W6 258 aa15.37■□□□□ 0.05
USP4-212ENST00000486549 TYRP14679 529 aa15.37■□□□□ 0.05
USP4-212ENST00000486549 SEC13P55735 322 aa15.37■□□□□ 0.05
USP4-212ENST00000486549 ZNF445P59923 1031 aa15.37■□□□□ 0.05
USP4-212ENST00000486549 RNASE9P60153 205 aaKnown RBP15.37■□□□□ 0.05
USP4-212ENST00000486549 PITX1P78337 314 aaPredicted RBP15.37■□□□□ 0.05
USP4-212ENST00000486549 GAS6Q14393 721 aa15.37■□□□□ 0.05
USP4-212ENST00000486549 FAM102AQ5T9C2 384 aaPredicted RBP15.37■□□□□ 0.05
USP4-212ENST00000486549 MAMSTRQ6ZN01 415 aa15.37■□□□□ 0.05
USP4-212ENST00000486549 MMS22LQ6ZRQ5 1243 aa15.37■□□□□ 0.05
USP4-212ENST00000486549 BEND5Q7L4P6 421 aa15.37■□□□□ 0.05
USP4-212ENST00000486549 SLC26A9Q7LBE3 791 aa15.37■□□□□ 0.05
USP4-212ENST00000486549 PHLDB2Q86SQ0 1253 aa15.37■□□□□ 0.05
USP4-212ENST00000486549 XYLT1Q86Y38 959 aa15.37■□□□□ 0.05
USP4-212ENST00000486549 SLC30A5Q8TAD4 765 aa15.37■□□□□ 0.05
USP4-212ENST00000486549 EZH1Q92800 747 aaPredicted RBP15.37■□□□□ 0.05
USP4-212ENST00000486549 SLC2A13Q96QE2 648 aa15.37■□□□□ 0.05
USP4-212ENST00000486549 PNKPQ96T60 521 aa15.37■□□□□ 0.05
USP4-212ENST00000486549 PCDHB18PQ96TA0 734 aa15.37■□□□□ 0.05
USP4-212ENST00000486549 AGPAT1Q99943 283 aa15.37■□□□□ 0.05
USP4-212ENST00000486549 C11orf70Q9BRQ4 267 aa15.37■□□□□ 0.05
USP4-212ENST00000486549 FAM126AQ9BYI3 521 aaPredicted RBP15.37■□□□□ 0.05
USP4-212ENST00000486549 XPO4Q9C0E2 1151 aaKnown RBP15.37■□□□□ 0.05
USP4-212ENST00000486549 ARHGEF4Q9NR80 690 aa15.37■□□□□ 0.05
USP4-212ENST00000486549 DNAJC17Q9NVM6 304 aaKnown RBP15.37■□□□□ 0.05
USP4-212ENST00000486549 MYO6Q9UM54 1294 aa15.37■□□□□ 0.05
USP4-212ENST00000486549 PALM2-AKAP2B1ALY0 433 aaPredicted RBP15.36■□□□□ 0.05
USP4-212ENST00000486549 TSPAN3O60637 253 aa15.36■□□□□ 0.05
USP4-212ENST00000486549 RNF40O75150 1001 aa15.36■□□□□ 0.05
USP4-212ENST00000486549 TULP3O75386 442 aa15.36■□□□□ 0.05
USP4-212ENST00000486549 MOCS2O96007 188 aaPredicted RBP15.36■□□□□ 0.05
USP4-212ENST00000486549 IGLV3-27P01718 113 aa15.36■□□□□ 0.05
USP4-212ENST00000486549 LMNAP02545 664 aaKnown RBP15.36■□□□□ 0.05
USP4-212ENST00000486549 APODP05090 189 aa15.36■□□□□ 0.05
USP4-212ENST00000486549 TPM3P06753 285 aa15.36■□□□□ 0.05
USP4-212ENST00000486549 SP9P0CG40 484 aa15.36■□□□□ 0.05
USP4-212ENST00000486549 CHKAP35790 457 aa15.36■□□□□ 0.05
USP4-212ENST00000486549 PBX1P40424 430 aa15.36■□□□□ 0.05
USP4-212ENST00000486549 EIF2DP41214 584 aaKnown RBP15.36■□□□□ 0.05
USP4-212ENST00000486549 NSFP46459 744 aaKnown RBP15.36■□□□□ 0.05
USP4-212ENST00000486549 GABRB2P47870 512 aa15.36■□□□□ 0.05
USP4-212ENST00000486549 NRLP54845 237 aa15.36■□□□□ 0.05
USP4-212ENST00000486549 CDK17Q00537 523 aa15.36■□□□□ 0.05
USP4-212ENST00000486549 MESP2Q0VG99 397 aa15.36■□□□□ 0.05
USP4-212ENST00000486549 CLEC16AQ2KHT3 1053 aa15.36■□□□□ 0.05
USP4-212ENST00000486549 SFMBT2Q5VUG0 894 aa15.36■□□□□ 0.05
USP4-212ENST00000486549 E4F1Q66K89 784 aaPredicted RBP15.36■□□□□ 0.05
USP4-212ENST00000486549 NUGGCQ68CJ6 796 aa15.36■□□□□ 0.05
USP4-212ENST00000486549 ZDHHC17Q8IUH5 632 aa15.36■□□□□ 0.05
USP4-212ENST00000486549 SFTPA1Q8IWL2 248 aa15.36■□□□□ 0.05
USP4-212ENST00000486549 UNC45BQ8IWX7 931 aa15.36■□□□□ 0.05
USP4-212ENST00000486549 CPLX3Q8WVH0 158 aa15.36■□□□□ 0.05
USP4-212ENST00000486549 FCRL2Q96LA5 508 aaPredicted RBP15.36■□□□□ 0.05
USP4-212ENST00000486549 XPO6Q96QU8 1125 aaKnown RBP15.36■□□□□ 0.05
USP4-212ENST00000486549 TTYH3Q9C0H2 523 aa15.36■□□□□ 0.05
USP4-212ENST00000486549 MARK1Q9P0L2 795 aa15.36■□□□□ 0.05
USP4-212ENST00000486549 WDR35Q9P2L0 1181 aa15.36■□□□□ 0.05
USP4-212ENST00000486549 DEC1Q9P2X7 70 aa15.36■□□□□ 0.05
USP4-212ENST00000486549 TLR6Q9Y2C9 796 aa15.36■□□□□ 0.05
USP4-212ENST00000486549 PCDHGA2Q9Y5H1 932 aa15.36■□□□□ 0.05
USP4-212ENST00000486549 TRIM24O15164 1050 aa15.35■□□□□ 0.05
USP4-212ENST00000486549 IRAK2O43187 625 aa15.35■□□□□ 0.05
USP4-212ENST00000486549 CBFA2T2O43439 604 aa15.35■□□□□ 0.05
USP4-212ENST00000486549 KAT7O95251 611 aa15.35■□□□□ 0.05
USP4-212ENST00000486549 CYBBP04839 570 aa15.35■□□□□ 0.05
USP4-212ENST00000486549 UNGP13051 313 aaPredicted RBP15.35■□□□□ 0.05
USP4-212ENST00000486549 SLC11A2P49281 568 aa15.35■□□□□ 0.05
USP4-212ENST00000486549 SATB1Q01826 763 aa15.35■□□□□ 0.05
USP4-212ENST00000486549 CSTF1Q05048 431 aaKnown RBP15.35■□□□□ 0.05
USP4-212ENST00000486549 RING1Q06587 406 aa15.35■□□□□ 0.05
USP4-212ENST00000486549 NNTQ13423 1086 aa15.35■□□□□ 0.05
USP4-212ENST00000486549 ZC3H12AQ5D1E8 599 aaKnown RBP15.35■□□□□ 0.05
USP4-212ENST00000486549 GRAMD4Q6IC98 578 aa15.35■□□□□ 0.05
USP4-212ENST00000486549 PKN3Q6P5Z2 889 aa15.35■□□□□ 0.05
USP4-212ENST00000486549 TSSK4Q6SA08 328 aa15.35■□□□□ 0.05
USP4-212ENST00000486549 IRF2BP2Q7Z5L9 587 aa15.35■□□□□ 0.05
USP4-212ENST00000486549 ETFBKMTQ8IXQ9 262 aa15.35■□□□□ 0.05
USP4-212ENST00000486549 SYNPOQ8N3V7 929 aa15.35■□□□□ 0.05
USP4-212ENST00000486549 CPXM2Q8N436 756 aa15.35■□□□□ 0.05
USP4-212ENST00000486549 ZNF397Q8NF99 534 aaPredicted RBP15.35■□□□□ 0.05
USP4-212ENST00000486549 RPLP0P6Q8NHW5 317 aa15.35■□□□□ 0.05
USP4-212ENST00000486549 DDI1Q8WTU0 396 aa15.35■□□□□ 0.05
USP4-212ENST00000486549 ATRIPQ8WXE1 791 aa15.35■□□□□ 0.05
USP4-212ENST00000486549 P2RY11Q96G91 374 aa15.35■□□□□ 0.05
USP4-212ENST00000486549 NUP58Q9BVL2 599 aa15.35■□□□□ 0.05
USP4-212ENST00000486549 METTL5Q9NRN9 209 aaKnown RBP15.35■□□□□ 0.05
USP4-212ENST00000486549 DDIT4Q9NX09 232 aa15.35■□□□□ 0.05
USP4-212ENST00000486549 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.35■□□□□ 0.05
USP4-212ENST00000486549 GOLGA6L7A0A1B0GV03 622 aa15.34■□□□□ 0.05
USP4-212ENST00000486549 ANTXRLA6NF34 631 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms