RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 GRK4P32298 578 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 QPCTQ16769 361 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 CCDC92Q53HC0 331 aaPredicted RBP11.35□□□□□ -0.59
HDAC6-228ENST00000486227 WSCD1Q658N2 575 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 PDZD8Q8NEN9 1154 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 ULK4Q96C45 1275 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 FAM192AQ9GZU8 254 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 ST6GALNAC4Q9H4F1 302 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 UBP1Q9NZI7 540 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 HEY2Q9UBP5 337 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 SHOC2Q9UQ13 582 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 NAALADL1Q9UQQ1 740 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 CDY2AQ9Y6F7 541 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 ANXA9O76027 345 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 MLH1P40692 756 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 DUSP28Q4G0W2 176 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 OLFML2BQ68BL8 750 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 PALB2Q86YC2 1186 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 ZSWIM2Q8NEG5 633 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 SH3KBP1Q96B97 665 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 NRBF2Q96F24 287 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 CELF6Q96J87 481 aaKnown RBP11.35□□□□□ -0.59
HDAC6-228ENST00000486227 C12orf42Q96LP6 360 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 PGLYRP2Q96PD5 576 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 RBAK-RBAKDNI3L0D1 243 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 FZD9O00144 591 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 ZCCHC18P0CG32 403 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 KLRC2P26717 231 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 CDC25CP30307 473 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 ARHGEF7Q14155 803 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 ITIH5Q86UX2 942 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 ZDHHC17Q8IUH5 632 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 DAW1Q8N136 415 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 AFF4Q9UHB7 1163 aaKnown RBP11.34□□□□□ -0.59
HDAC6-228ENST00000486227 SALL4Q9UJQ4 1053 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 C5P01031 1676 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 SLC12A8A0AV02 714 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 NDUFS3O75489 264 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 CST3P01034 146 aaPredicted RBP11.34□□□□□ -0.59
HDAC6-228ENST00000486227 KDELR1P24390 212 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 OVGP1Q12889 678 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 COLGALT1Q8NBJ5 622 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 E2F7Q96AV8 911 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 MSRAQ9UJ68 235 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 KCNK1O00180 336 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 UNC5CO95185 931 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 SSTR1P30872 391 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 ICAM3P32942 547 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 ELK3P41970 407 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 SLC34A1Q06495 639 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 CHI3L2Q15782 390 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 C12orf29Q8N999 325 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 PPTC7Q8NI37 304 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 SDCCAG3Q96C92 435 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 ZMAT2Q96NC0 199 aaKnown RBP11.34□□□□□ -0.59
HDAC6-228ENST00000486227 EMILIN2Q9BXX0 1053 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 NIFKQ9BYG3 293 aaKnown RBP11.34□□□□□ -0.59
HDAC6-228ENST00000486227 OSBPL7Q9BZF2 842 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 ULBP1Q9BZM6 244 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 MRPL40Q9NQ50 206 aaKnown RBP11.34□□□□□ -0.59
HDAC6-228ENST00000486227 C2CD2Q9Y426 696 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 MAFBQ9Y5Q3 323 aaPredicted RBP11.34□□□□□ -0.59
HDAC6-228ENST00000486227 MRPL42Q9Y6G3 142 aaKnown RBP11.34□□□□□ -0.59
HDAC6-228ENST00000486227 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.34□□□□□ -0.59
HDAC6-228ENST00000486227 H0Y626 953 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 DNAJC6O75061 913 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 BDNFP23560 247 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 ZNF177Q13360 481 aaPredicted RBP11.34□□□□□ -0.59
HDAC6-228ENST00000486227 GTF2H3Q13889 308 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 FAM171A1Q5VUB5 890 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 C16orf87Q6PH81 154 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 LINC00523Q86TU6 105 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 PHF13Q86YI8 300 aaPredicted RBP11.34□□□□□ -0.59
HDAC6-228ENST00000486227 HELQQ8TDG4 1101 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 PBXIP1Q96AQ6 731 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 KCNK16Q96T55 309 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 DMAC2Q9NW81 257 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 DOLKQ9UPQ8 538 aa11.34□□□□□ -0.59
HDAC6-228ENST00000486227 TTLL13PA6NNM8 815 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 ABLIM1O14639 778 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 PTPN1P18031 435 aaKnown RBP11.33□□□□□ -0.6
HDAC6-228ENST00000486227 ARL2P36404 184 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 PDAP1Q13442 181 aaKnown RBP11.33□□□□□ -0.6
HDAC6-228ENST00000486227 TBCCQ15814 346 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 ACBD5Q5T8D3 534 aaPredicted RBP11.33□□□□□ -0.6
HDAC6-228ENST00000486227 DDIASQ8IXT1 998 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 SGF29Q96ES7 293 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 SLC30A1Q9Y6M5 507 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 ALS2Q96Q42 1657 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 DNM1LO00429 736 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 MGRN1O60291 552 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 CAPN15O75808 1086 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 ACAP1Q15027 740 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 TEDDM1Q5T9Z0 273 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 KCNT2Q6UVM3 1135 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 UNC93AQ86WB7 457 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 ARID3BQ8IVW6 561 aaPredicted RBP11.33□□□□□ -0.6
HDAC6-228ENST00000486227 CKAP2Q8WWK9 683 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 SMARCD1Q96GM5 515 aa11.33□□□□□ -0.6
HDAC6-228ENST00000486227 PIH1D1Q9NWS0 290 aaKnown RBP11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms