RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 CAPN9O14815 690 aa16.56■□□□□ 0.24
UPF3A-208ENST00000484246 MSI1O43347 362 aaKnown RBP16.56■□□□□ 0.24
UPF3A-208ENST00000484246 CACNG3O60359 315 aa16.56■□□□□ 0.24
UPF3A-208ENST00000484246 PENKP01210 267 aaPredicted RBP16.56■□□□□ 0.24
UPF3A-208ENST00000484246 DCNP07585 359 aaKnown RBP16.56■□□□□ 0.24
UPF3A-208ENST00000484246 HARS2P49590 506 aaKnown RBP16.56■□□□□ 0.24
UPF3A-208ENST00000484246 GRSF1Q12849 480 aaKnown RBP eCLIP16.56■□□□□ 0.24
UPF3A-208ENST00000484246 PTP4A2Q12974 167 aa16.56■□□□□ 0.24
UPF3A-208ENST00000484246 PON2Q15165 354 aa16.56■□□□□ 0.24
UPF3A-208ENST00000484246 TAF5Q15542 800 aa16.56■□□□□ 0.24
UPF3A-208ENST00000484246 ASIC2Q16515 512 aa16.56■□□□□ 0.24
UPF3A-208ENST00000484246 FBXO43Q4G163 708 aa16.56■□□□□ 0.24
UPF3A-208ENST00000484246 SYPL2Q5VXT5 272 aa16.56■□□□□ 0.24
UPF3A-208ENST00000484246 OR6B2Q6IFH4 312 aa16.56■□□□□ 0.24
UPF3A-208ENST00000484246 FSTL4Q6MZW2 842 aa16.56■□□□□ 0.24
UPF3A-208ENST00000484246 PPP1R2P3Q6NXS1 205 aa16.56■□□□□ 0.24
UPF3A-208ENST00000484246 SARM1Q6SZW1 724 aa16.56■□□□□ 0.24
UPF3A-208ENST00000484246 UNC45BQ8IWX7 931 aa16.56■□□□□ 0.24
UPF3A-208ENST00000484246 PHTF2Q8N3S3 785 aa16.56■□□□□ 0.24
UPF3A-208ENST00000484246 RNF214Q8ND24 703 aa16.56■□□□□ 0.24
UPF3A-208ENST00000484246 FCRL2Q96LA5 508 aaPredicted RBP16.56■□□□□ 0.24
UPF3A-208ENST00000484246 AGPAT1Q99943 283 aa16.56■□□□□ 0.24
UPF3A-208ENST00000484246 WDR35Q9P2L0 1181 aa16.56■□□□□ 0.24
UPF3A-208ENST00000484246 MYH10P35580 1976 aa16.56■□□□□ 0.24
UPF3A-208ENST00000484246 NOS2P35228 1153 aa16.55■□□□□ 0.24
UPF3A-208ENST00000484246 TBX4P57082 545 aa16.55■□□□□ 0.24
UPF3A-208ENST00000484246 ZBED6P86452 979 aa16.55■□□□□ 0.24
UPF3A-208ENST00000484246 ARID5AQ03989 594 aa16.55■□□□□ 0.24
UPF3A-208ENST00000484246 MTA1Q13330 715 aa16.55■□□□□ 0.24
UPF3A-208ENST00000484246 SFMBT2Q5VUG0 894 aa16.55■□□□□ 0.24
UPF3A-208ENST00000484246 TMEM25Q86YD3 366 aa16.55■□□□□ 0.24
UPF3A-208ENST00000484246 DEFB106AQ8N104 65 aa16.55■□□□□ 0.24
UPF3A-208ENST00000484246 CPA5Q8WXQ8 436 aa16.55■□□□□ 0.24
UPF3A-208ENST00000484246 NT5C3BQ969T7 300 aa16.55■□□□□ 0.24
UPF3A-208ENST00000484246 LMAN1LQ9HAT1 526 aa16.55■□□□□ 0.24
UPF3A-208ENST00000484246 CAPN11Q9UMQ6 739 aa16.55■□□□□ 0.24
UPF3A-208ENST00000484246 A0A0A0MRY4 1105 aa16.54■□□□□ 0.24
UPF3A-208ENST00000484246 PAPSS2O95340 614 aaPredicted RBP16.54■□□□□ 0.24
UPF3A-208ENST00000484246 TRUB2O95900 331 aaKnown RBP16.54■□□□□ 0.24
UPF3A-208ENST00000484246 GYPCP04921 128 aa16.54■□□□□ 0.24
UPF3A-208ENST00000484246 HMBSP08397 361 aa16.54■□□□□ 0.24
UPF3A-208ENST00000484246 MATKP42679 507 aa16.54■□□□□ 0.24
UPF3A-208ENST00000484246 NSFP46459 744 aaKnown RBP16.54■□□□□ 0.24
UPF3A-208ENST00000484246 GALK1P51570 392 aa16.54■□□□□ 0.24
UPF3A-208ENST00000484246 CDK17Q00537 523 aa16.54■□□□□ 0.24
UPF3A-208ENST00000484246 PREPLQ4J6C6 727 aaPredicted RBP16.54■□□□□ 0.24
UPF3A-208ENST00000484246 DCAF6Q58WW2 860 aa16.54■□□□□ 0.24
UPF3A-208ENST00000484246 ADGRF1Q5T601 910 aa16.54■□□□□ 0.24
UPF3A-208ENST00000484246 OTUD1Q5VV17 481 aaPredicted RBP16.54■□□□□ 0.24
UPF3A-208ENST00000484246 RNF43Q68DV7 783 aa16.54■□□□□ 0.24
UPF3A-208ENST00000484246 NAIF1Q69YI7 327 aaPredicted RBP16.54■□□□□ 0.24
UPF3A-208ENST00000484246 MMS22LQ6ZRQ5 1243 aa16.54■□□□□ 0.24
UPF3A-208ENST00000484246 MON1BQ7L1V2 547 aa16.54■□□□□ 0.24
UPF3A-208ENST00000484246 C12orf40Q86WS4 652 aa16.54■□□□□ 0.24
UPF3A-208ENST00000484246 DENND1CQ8IV53 801 aa16.54■□□□□ 0.24
UPF3A-208ENST00000484246 PRSS33Q8NF86 280 aa16.54■□□□□ 0.24
UPF3A-208ENST00000484246 CCDC26Q8TAB7 109 aa16.54■□□□□ 0.24
UPF3A-208ENST00000484246 EZH1Q92800 747 aaPredicted RBP16.54■□□□□ 0.24
UPF3A-208ENST00000484246 PGAP3Q96FM1 320 aaPredicted RBP16.54■□□□□ 0.24
UPF3A-208ENST00000484246 NPY6RQ99463 290 aa16.54■□□□□ 0.24
UPF3A-208ENST00000484246 PRMT8Q9NR22 394 aaPredicted RBP16.54■□□□□ 0.24
UPF3A-208ENST00000484246 TMEM59LQ9UK28 342 aa16.54■□□□□ 0.24
UPF3A-208ENST00000484246 FARP1Q9Y4F1 1045 aaPredicted RBP16.54■□□□□ 0.24
UPF3A-208ENST00000484246 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.54■□□□□ 0.244e-6■■■■□ 22.5
UPF3A-208ENST00000484246 CHRM1P11229 460 aaPredicted RBP16.53■□□□□ 0.24
UPF3A-208ENST00000484246 SLC11A2P49281 568 aa16.53■□□□□ 0.24
UPF3A-208ENST00000484246 PITX1P78337 314 aaPredicted RBP16.53■□□□□ 0.24
UPF3A-208ENST00000484246 TRIM14Q14142 442 aa16.53■□□□□ 0.24
UPF3A-208ENST00000484246 GAS6Q14393 721 aa16.53■□□□□ 0.24
UPF3A-208ENST00000484246 ARID5BQ14865 1188 aa16.53■□□□□ 0.24
UPF3A-208ENST00000484246 FAM102AQ5T9C2 384 aaPredicted RBP16.53■□□□□ 0.24
UPF3A-208ENST00000484246 FYB2Q5VWT5 728 aa16.53■□□□□ 0.24
UPF3A-208ENST00000484246 SPECC1LQ69YQ0 1117 aa16.53■□□□□ 0.24
UPF3A-208ENST00000484246 BNIPLQ7Z465 357 aa16.53■□□□□ 0.24
UPF3A-208ENST00000484246 PNKPQ96T60 521 aa16.53■□□□□ 0.24
UPF3A-208ENST00000484246 BBS2Q9BXC9 721 aa16.53■□□□□ 0.24
UPF3A-208ENST00000484246 IRF2BPLQ9H1B7 796 aa16.53■□□□□ 0.24
UPF3A-208ENST00000484246 FBRSL1Q9HCM7 1045 aaKnown RBP16.53■□□□□ 0.24
UPF3A-208ENST00000484246 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.53■□□□□ 0.24
UPF3A-208ENST00000484246 FBXO10Q9UK96 956 aa16.53■□□□□ 0.24
UPF3A-208ENST00000484246 STAP1Q9ULZ2 295 aa16.53■□□□□ 0.24
UPF3A-208ENST00000484246 BZW2Q9Y6E2 419 aaKnown RBP16.53■□□□□ 0.24
UPF3A-208ENST00000484246 CHURC1-FNTBB4DL54 471 aa16.52■□□□□ 0.24
UPF3A-208ENST00000484246 ACSL4O60488 711 aa16.52■□□□□ 0.24
UPF3A-208ENST00000484246 TULP3O75386 442 aa16.52■□□□□ 0.24
UPF3A-208ENST00000484246 EGFP01133 1207 aa16.52■□□□□ 0.24
UPF3A-208ENST00000484246 CALB1P05937 261 aa16.52■□□□□ 0.24
UPF3A-208ENST00000484246 SLC2A3P11169 496 aa16.52■□□□□ 0.24
UPF3A-208ENST00000484246 TYRP14679 529 aa16.52■□□□□ 0.24
UPF3A-208ENST00000484246 HNRNPH3P31942 346 aaKnown RBP16.52■□□□□ 0.24
UPF3A-208ENST00000484246 GRIA2P42262 883 aa16.52■□□□□ 0.24
UPF3A-208ENST00000484246 PTPN5P54829 565 aa16.52■□□□□ 0.24
UPF3A-208ENST00000484246 TCF15Q12870 199 aa16.52■□□□□ 0.24
UPF3A-208ENST00000484246 PPP2R5DQ14738 602 aa16.52■□□□□ 0.24
UPF3A-208ENST00000484246 FAM133BQ5BKY9 247 aaKnown RBP16.52■□□□□ 0.24
UPF3A-208ENST00000484246 MPP7Q5T2T1 576 aa16.52■□□□□ 0.24
UPF3A-208ENST00000484246 HGSNATQ68CP4 663 aa16.52■□□□□ 0.24
UPF3A-208ENST00000484246 ZNF571Q7Z3V5 609 aaPredicted RBP16.52■□□□□ 0.24
UPF3A-208ENST00000484246 C1orf210Q8IVY1 113 aa16.52■□□□□ 0.24
UPF3A-208ENST00000484246 VSTM4Q8IW00 320 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms