RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 SSR1P43307 286 aaKnown RBP12.73□□□□□ -0.37
SDC1-206ENST00000482879 CXCR3P49682 368 aa12.73□□□□□ -0.37
SDC1-206ENST00000482879 HDAC4P56524 1084 aa12.73□□□□□ -0.37
SDC1-206ENST00000482879 TFF2Q03403 129 aa12.73□□□□□ -0.37
SDC1-206ENST00000482879 NNTQ13423 1086 aa12.73□□□□□ -0.37
SDC1-206ENST00000482879 EIF4EBP2Q13542 120 aaPredicted RBP12.73□□□□□ -0.37
SDC1-206ENST00000482879 PUS10Q3MIT2 529 aaKnown RBP12.73□□□□□ -0.37
SDC1-206ENST00000482879 ZC3H12AQ5D1E8 599 aaKnown RBP12.73□□□□□ -0.37
SDC1-206ENST00000482879 FAM78AQ5JUQ0 283 aa12.73□□□□□ -0.37
SDC1-206ENST00000482879 DAB2IPQ5VWQ8 1189 aa12.73□□□□□ -0.37
SDC1-206ENST00000482879 PTCRAQ6ISU1 281 aaPredicted RBP12.73□□□□□ -0.37
SDC1-206ENST00000482879 C11orf63Q6NUN7 778 aa12.73□□□□□ -0.37
SDC1-206ENST00000482879 DAAM2Q86T65 1068 aa12.73□□□□□ -0.37
SDC1-206ENST00000482879 CPNE8Q86YQ8 564 aa12.73□□□□□ -0.37
SDC1-206ENST00000482879 ARFGAP1Q8N6T3 406 aa12.73□□□□□ -0.37
SDC1-206ENST00000482879 TTC16Q8NEE8 873 aa12.73□□□□□ -0.37
SDC1-206ENST00000482879 SMARCD2Q92925 531 aa12.73□□□□□ -0.37
SDC1-206ENST00000482879 USP13Q92995 863 aaPredicted RBP12.73□□□□□ -0.37
SDC1-206ENST00000482879 ZFRQ96KR1 1074 aaKnown RBP12.73□□□□□ -0.37
SDC1-206ENST00000482879 WDCPQ9H6R7 721 aa12.73□□□□□ -0.37
SDC1-206ENST00000482879 KCND1Q9NSA2 647 aa12.73□□□□□ -0.37
SDC1-206ENST00000482879 TDP1Q9NUW8 608 aa12.73□□□□□ -0.37
SDC1-206ENST00000482879 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.73□□□□□ -0.37
SDC1-206ENST00000482879 FAM50BQ9Y247 325 aa12.73□□□□□ -0.37
SDC1-206ENST00000482879 HYOU1Q9Y4L1 999 aa12.73□□□□□ -0.37
SDC1-206ENST00000482879 ALG6Q9Y672 507 aa12.73□□□□□ -0.37
SDC1-206ENST00000482879 ZFP37Q9Y6Q3 630 aaPredicted RBP12.73□□□□□ -0.37
SDC1-206ENST00000482879 LEFTY2O00292 366 aa12.72□□□□□ -0.37
SDC1-206ENST00000482879 LRCH4O75427 683 aa12.72□□□□□ -0.37
SDC1-206ENST00000482879 STC2O76061 302 aa12.72□□□□□ -0.37
SDC1-206ENST00000482879 PRAMEF12O95522 483 aa12.72□□□□□ -0.37
SDC1-206ENST00000482879 SLC2A3P11169 496 aa12.72□□□□□ -0.37
SDC1-206ENST00000482879 LAMP2P13473 410 aa12.72□□□□□ -0.37
SDC1-206ENST00000482879 COMTP21964 271 aa12.72□□□□□ -0.37
SDC1-206ENST00000482879 SP100P23497 879 aaPredicted RBP12.72□□□□□ -0.37
SDC1-206ENST00000482879 MIPP30301 263 aa12.72□□□□□ -0.37
SDC1-206ENST00000482879 CCR1P32246 355 aa12.72□□□□□ -0.37
SDC1-206ENST00000482879 PCK1P35558 622 aa12.72□□□□□ -0.37
SDC1-206ENST00000482879 SLC1A1P43005 524 aa12.72□□□□□ -0.37
SDC1-206ENST00000482879 HARS2P49590 506 aaKnown RBP12.72□□□□□ -0.37
SDC1-206ENST00000482879 KCNQ1P51787 676 aa12.72□□□□□ -0.37
SDC1-206ENST00000482879 ZXDBP98169 803 aa12.72□□□□□ -0.37
SDC1-206ENST00000482879 RING1Q06587 406 aa12.72□□□□□ -0.37
SDC1-206ENST00000482879 PPP2R5DQ14738 602 aa12.72□□□□□ -0.37
SDC1-206ENST00000482879 SMAD2Q15796 467 aaKnown RBP12.72□□□□□ -0.37
SDC1-206ENST00000482879 FAM131BQ86XD5 332 aa12.72□□□□□ -0.37
SDC1-206ENST00000482879 DDX42Q86XP3 938 aaKnown RBP eCLIP12.72□□□□□ -0.37
SDC1-206ENST00000482879 UNC45BQ8IWX7 931 aa12.72□□□□□ -0.37
SDC1-206ENST00000482879 CELF5Q8N6W0 485 aaKnown RBP12.72□□□□□ -0.37
SDC1-206ENST00000482879 SH3RF2Q8TEC5 729 aa12.72□□□□□ -0.37
SDC1-206ENST00000482879 PLD4Q96BZ4 506 aa12.72□□□□□ -0.37
SDC1-206ENST00000482879 ACSF2Q96CM8 615 aaPredicted RBP12.72□□□□□ -0.37
SDC1-206ENST00000482879 SLC39A13Q96H72 371 aa12.72□□□□□ -0.37
SDC1-206ENST00000482879 FCRL2Q96LA5 508 aaPredicted RBP12.72□□□□□ -0.37
SDC1-206ENST00000482879 ASB16Q96NS5 453 aa12.72□□□□□ -0.37
SDC1-206ENST00000482879 PHF7Q9BWX1 381 aaPredicted RBP12.72□□□□□ -0.37
SDC1-206ENST00000482879 GOLPH3Q9H4A6 298 aa12.72□□□□□ -0.37
SDC1-206ENST00000482879 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.72□□□□□ -0.37
SDC1-206ENST00000482879 CFAP97Q9P2B7 532 aa12.72□□□□□ -0.37
SDC1-206ENST00000482879 PCSK1NQ9UHG2 260 aa12.72□□□□□ -0.37
SDC1-206ENST00000482879 SLC12A6Q9UHW9 1150 aa12.72□□□□□ -0.37
SDC1-206ENST00000482879 CCL26Q9Y258 94 aa12.72□□□□□ -0.37
SDC1-206ENST00000482879 SH3BP1Q9Y3L3 701 aa12.72□□□□□ -0.37
SDC1-206ENST00000482879 CAPN6Q9Y6Q1 641 aa12.72□□□□□ -0.37
SDC1-206ENST00000482879 SPOPO43791 374 aa12.71□□□□□ -0.37
SDC1-206ENST00000482879 PRPSAP2O60256 369 aa12.71□□□□□ -0.37
SDC1-206ENST00000482879 MOCS2O96007 188 aaPredicted RBP12.71□□□□□ -0.37
SDC1-206ENST00000482879 IGLV3-27P01718 113 aa12.71□□□□□ -0.37
SDC1-206ENST00000482879 APOEP02649 317 aa12.71□□□□□ -0.37
SDC1-206ENST00000482879 TNNT1P13805 278 aa12.71□□□□□ -0.37
SDC1-206ENST00000482879 CORO1AP31146 461 aaKnown RBP12.71□□□□□ -0.37
SDC1-206ENST00000482879 VIPR2P41587 438 aa12.71□□□□□ -0.37
SDC1-206ENST00000482879 HADHQ16836 314 aaKnown RBP12.71□□□□□ -0.37
SDC1-206ENST00000482879 BRMS1LQ5PSV4 323 aa12.71□□□□□ -0.37
SDC1-206ENST00000482879 NUGGCQ68CJ6 796 aa12.71□□□□□ -0.37
SDC1-206ENST00000482879 SLFN11Q7Z7L1 901 aa12.71□□□□□ -0.37
SDC1-206ENST00000482879 SYCE1Q8N0S2 351 aa12.71□□□□□ -0.37
SDC1-206ENST00000482879 ATP6V0D2Q8N8Y2 350 aa12.71□□□□□ -0.37
SDC1-206ENST00000482879 LRRC57Q8N9N7 239 aa12.71□□□□□ -0.37
SDC1-206ENST00000482879 ST13P5Q8NFI4 369 aaPredicted RBP12.71□□□□□ -0.37
SDC1-206ENST00000482879 ADAMTS19Q8TE59 1207 aa12.71□□□□□ -0.37
SDC1-206ENST00000482879 WBP2Q969T9 261 aa12.71□□□□□ -0.37
SDC1-206ENST00000482879 ALS2CR12Q96Q35 445 aa12.71□□□□□ -0.37
SDC1-206ENST00000482879 IRX2Q9BZI1 471 aaPredicted RBP12.71□□□□□ -0.37
SDC1-206ENST00000482879 DCLK3Q9C098 648 aa12.71□□□□□ -0.37
SDC1-206ENST00000482879 TKTL2Q9H0I9 626 aa12.71□□□□□ -0.37
SDC1-206ENST00000482879 KIF9Q9HAQ2 790 aa12.71□□□□□ -0.37
SDC1-206ENST00000482879 TRPV4Q9HBA0 871 aa12.71□□□□□ -0.37
SDC1-206ENST00000482879 ZFP14Q9HCL3 533 aa12.71□□□□□ -0.37
SDC1-206ENST00000482879 ARHGEF38Q9NXL2 777 aa12.71□□□□□ -0.37
SDC1-206ENST00000482879 EPS15L1Q9UBC2 864 aa12.71□□□□□ -0.37
SDC1-206ENST00000482879 LSM7Q9UK45 103 aaKnown RBP12.71□□□□□ -0.37
SDC1-206ENST00000482879 USP18Q9UMW8 372 aa12.71□□□□□ -0.37
SDC1-206ENST00000482879 NR2E1Q9Y466 385 aa12.71□□□□□ -0.37
SDC1-206ENST00000482879 HEPACAM2A8MVW5 462 aa12.7□□□□□ -0.38
SDC1-206ENST00000482879 KCNU1A8MYU2 1149 aa12.7□□□□□ -0.38
SDC1-206ENST00000482879 KIF5CO60282 957 aa12.7□□□□□ -0.38
SDC1-206ENST00000482879 FTCDO95954 541 aa12.7□□□□□ -0.38
SDC1-206ENST00000482879 KLKB1P03952 638 aa12.7□□□□□ -0.38
SDC1-206ENST00000482879 TCF4P15884 667 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms