RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 SPATA6LQ8N4H0 392 aa13.9□□□□□ -0.18
USP42-206ENST00000479544 JOSD2Q8TAC2 188 aa13.9□□□□□ -0.18
USP42-206ENST00000479544 CPT1BQ92523 772 aa13.9□□□□□ -0.18
USP42-206ENST00000479544 GFM2Q969S9 779 aaKnown RBP13.9□□□□□ -0.18
USP42-206ENST00000479544 F7P08709 466 aaPredicted RBP13.9□□□□□ -0.18
USP42-206ENST00000479544 GFAPP14136 432 aa13.9□□□□□ -0.18
USP42-206ENST00000479544 CCNB1P14635 433 aa13.9□□□□□ -0.18
USP42-206ENST00000479544 ME2P23368 584 aa13.9□□□□□ -0.18
USP42-206ENST00000479544 PHKA2P46019 1235 aa13.9□□□□□ -0.18
USP42-206ENST00000479544 MRPS15P82914 257 aaKnown RBP13.9□□□□□ -0.18
USP42-206ENST00000479544 CACNB2Q08289 660 aaPredicted RBP13.9□□□□□ -0.18
USP42-206ENST00000479544 TRAF2Q12933 501 aa13.9□□□□□ -0.18
USP42-206ENST00000479544 ITGADQ13349 1161 aa13.9□□□□□ -0.18
USP42-206ENST00000479544 GIPC3Q8TF64 312 aa13.9□□□□□ -0.18
USP42-206ENST00000479544 SPATA16Q9BXB7 569 aa13.9□□□□□ -0.18
USP42-206ENST00000479544 NACA2Q9H009 215 aa13.9□□□□□ -0.18
USP42-206ENST00000479544 S100A14Q9HCY8 104 aa13.9□□□□□ -0.18
USP42-206ENST00000479544 ANKEF1Q9NU02 776 aa13.9□□□□□ -0.18
USP42-206ENST00000479544 ATP11BQ9Y2G3 1177 aa13.9□□□□□ -0.18
USP42-206ENST00000479544 CNTRLQ7Z7A1 2325 aa13.9□□□□□ -0.18
USP42-206ENST00000479544 PRPF4O43172 522 aaKnown RBP eCLIP13.9□□□□□ -0.19
USP42-206ENST00000479544 TOP3BO95985 862 aaKnown RBP13.9□□□□□ -0.19
USP42-206ENST00000479544 TRPC1P48995 793 aa13.9□□□□□ -0.19
USP42-206ENST00000479544 PERM1Q5SV97 790 aa13.9□□□□□ -0.19
USP42-206ENST00000479544 TDRD10Q5VZ19 366 aaKnown RBP13.9□□□□□ -0.19
USP42-206ENST00000479544 TSPAN14Q8NG11 270 aa13.9□□□□□ -0.19
USP42-206ENST00000479544 ZNF398Q8TD17 642 aa13.9□□□□□ -0.19
USP42-206ENST00000479544 LIN28AQ9H9Z2 209 aaKnown RBP13.9□□□□□ -0.19
USP42-206ENST00000479544 AAASQ9NRG9 546 aa13.9□□□□□ -0.19
USP42-206ENST00000479544 NOCTQ9UK39 431 aaKnown RBP13.9□□□□□ -0.19
USP42-206ENST00000479544 A0A096LPK6 155 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 UGT1A9O60656 530 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 OCM2P0CE71 109 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 OCMP0CE72 109 aaPredicted RBP13.89□□□□□ -0.19
USP42-206ENST00000479544 POU5F1Q01860 360 aaKnown RBP13.89□□□□□ -0.19
USP42-206ENST00000479544 DLG1Q12959 904 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 BOLA3Q53S33 107 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 EFHC2Q5JST6 749 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 EMC10Q5UCC4 262 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 CATSPER4Q7RTX7 472 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 RCN3Q96D15 328 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 UGT1A7Q9HAW7 530 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 UGT1A10Q9HAW8 530 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 UGT1A8Q9HAW9 530 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 GID8Q9NWU2 228 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 ARHGEF38Q9NXL2 777 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 DCDC2Q9UHG0 476 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 NR2E3Q9Y5X4 410 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 M0R3G1 203 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 PMPCBO75439 489 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 SRP72O76094 671 aaKnown RBP13.89□□□□□ -0.19
USP42-206ENST00000479544 PIGNO95427 931 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 FDX1P10109 184 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 CSE1LP55060 971 aaKnown RBP13.89□□□□□ -0.19
USP42-206ENST00000479544 TSTA3Q13630 321 aaPredicted RBP13.89□□□□□ -0.19
USP42-206ENST00000479544 MYBPC2Q14324 1141 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 UGCGQ16739 394 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 PPM1JQ5JR12 505 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 KCNT2Q6UVM3 1135 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 MYO1HQ8N1T3 1032 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 PARP8Q8N3A8 854 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 HELQQ8TDG4 1101 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 SLC7A6OSQ96CW6 309 aaPredicted RBP13.89□□□□□ -0.19
USP42-206ENST00000479544 TRIM15Q9C019 465 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 LGALS13Q9UHV8 139 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 TOPAZ1Q8N9V7 1692 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 GRK2P25098 689 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 DMPKQ09013 629 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 INPP5AQ14642 412 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 GOLGA7BQ2TAP0 167 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 C10orf107Q8IVU9 208 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 COLGALT1Q8NBJ5 622 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 FAM163AQ96GL9 167 aaPredicted RBP13.89□□□□□ -0.19
USP42-206ENST00000479544 ANGPTL3Q9Y5C1 460 aa13.89□□□□□ -0.19
USP42-206ENST00000479544 SMIM31A0A1B0GVY4 71 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 ATP6AP2A0A1C7CYW4 349 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 TCRBV7S3A2A0A539 114 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 ABLIM1O14639 778 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 ENTPD3O75355 529 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 ATP6AP2O75787 350 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 COX4I1P13073 169 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 TSPAN8P19075 237 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 SULT1E1P49888 294 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 TAF5Q15542 800 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 APOBEC3HQ6NTF7 200 aaKnown RBP13.88□□□□□ -0.19
USP42-206ENST00000479544 CERS5Q8N5B7 392 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 TMEM161BQ8NDZ6 487 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 HPDLQ96IR7 371 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 OMDQ99983 421 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 LMO7Q8WWI1 1683 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 AFDNP55196 1824 aaKnown RBP13.88□□□□□ -0.19
USP42-206ENST00000479544 MAP3K13O43283 966 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 CYP3A4P08684 503 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 GARTP22102 1010 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 NFKBIAP25963 317 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 SNX31Q8N9S9 440 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 UBE2OQ9C0C9 1292 aaKnown RBP13.88□□□□□ -0.19
USP42-206ENST00000479544 ATXN3LQ9H3M9 355 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 WDR41Q9HAD4 459 aa13.88□□□□□ -0.19
USP42-206ENST00000479544 AGO4Q9HCK5 861 aaKnown RBP13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms