RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 ANKRD52Q8NB46 1076 aa5.74□□□□□ -1.49
UPF3B-203ENST00000478840 B3GALNT2Q8NCR0 500 aa5.74□□□□□ -1.49
UPF3B-203ENST00000478840 GLMPQ8WWB7 406 aa5.74□□□□□ -1.49
UPF3B-203ENST00000478840 LPIN2Q92539 896 aa5.74□□□□□ -1.49
UPF3B-203ENST00000478840 VPS50Q96JG6 964 aa5.74□□□□□ -1.49
UPF3B-203ENST00000478840 PPP1R10Q96QC0 940 aaKnown RBP5.74□□□□□ -1.49
UPF3B-203ENST00000478840 PHF7Q9BWX1 381 aaPredicted RBP5.74□□□□□ -1.49
UPF3B-203ENST00000478840 RMI1Q9H9A7 625 aa5.74□□□□□ -1.49
UPF3B-203ENST00000478840 RCE1Q9Y256 329 aa5.74□□□□□ -1.49
UPF3B-203ENST00000478840 CCDC187A0A096LP49 1063 aa5.73□□□□□ -1.49
UPF3B-203ENST00000478840 OTOL1A6NHN0 477 aaPredicted RBP5.73□□□□□ -1.49
UPF3B-203ENST00000478840 TMEM200CA6NKL6 621 aa5.73□□□□□ -1.49
UPF3B-203ENST00000478840 ZBED4O75132 1171 aa5.73□□□□□ -1.49
UPF3B-203ENST00000478840 GUCY1B2O75343 617 aa5.73□□□□□ -1.49
UPF3B-203ENST00000478840 PMPCBO75439 489 aa5.73□□□□□ -1.49
UPF3B-203ENST00000478840 TJP3O95049 919 aa5.73□□□□□ -1.49
UPF3B-203ENST00000478840 F9P00740 461 aa5.73□□□□□ -1.49
UPF3B-203ENST00000478840 IL6RP08887 468 aaPredicted RBP5.73□□□□□ -1.49
UPF3B-203ENST00000478840 TNNT1P13805 278 aa5.73□□□□□ -1.49
UPF3B-203ENST00000478840 CPA1P15085 419 aa5.73□□□□□ -1.49
UPF3B-203ENST00000478840 CHMP24386 653 aa5.73□□□□□ -1.49
UPF3B-203ENST00000478840 ADRA1DP25100 572 aa5.73□□□□□ -1.49
UPF3B-203ENST00000478840 ZFP36P26651 326 aaKnown RBP5.73□□□□□ -1.49
UPF3B-203ENST00000478840 MCM5P33992 734 aa5.73□□□□□ -1.49
UPF3B-203ENST00000478840 PGM1P36871 562 aa5.73□□□□□ -1.49
UPF3B-203ENST00000478840 FOXL2P58012 376 aa5.73□□□□□ -1.49
UPF3B-203ENST00000478840 THOC5Q13769 683 aaKnown RBP5.73□□□□□ -1.49
UPF3B-203ENST00000478840 TOMM20Q15388 145 aa5.73□□□□□ -1.49
UPF3B-203ENST00000478840 TSTQ16762 297 aaKnown RBP5.73□□□□□ -1.49
UPF3B-203ENST00000478840 UBXN11Q5T124 520 aa5.73□□□□□ -1.49
UPF3B-203ENST00000478840 ITPRIPL1Q6GPH6 555 aa5.73□□□□□ -1.49
UPF3B-203ENST00000478840 INO80CQ6PI98 192 aaPredicted RBP5.73□□□□□ -1.49
UPF3B-203ENST00000478840 ANKRD44Q8N8A2 993 aa5.73□□□□□ -1.49
UPF3B-203ENST00000478840 CPEB3Q8NE35 698 aaKnown RBP5.73□□□□□ -1.49
UPF3B-203ENST00000478840 LINS1Q8NG48 757 aa5.73□□□□□ -1.49
UPF3B-203ENST00000478840 MYCBPAPQ8TBZ2 947 aa5.73□□□□□ -1.49
UPF3B-203ENST00000478840 SSH3Q8TE77 659 aa5.73□□□□□ -1.49
UPF3B-203ENST00000478840 FKBP10Q96AY3 582 aa5.73□□□□□ -1.49
UPF3B-203ENST00000478840 ERP27Q96DN0 273 aa5.73□□□□□ -1.49
UPF3B-203ENST00000478840 MYEOVQ96EZ4 313 aa5.73□□□□□ -1.49
UPF3B-203ENST00000478840 RSRC1Q96IZ7 334 aaKnown RBP5.73□□□□□ -1.49
UPF3B-203ENST00000478840 TEPSINQ96N21 525 aa5.73□□□□□ -1.49
UPF3B-203ENST00000478840 BARD1Q99728 777 aaKnown RBP5.73□□□□□ -1.49
UPF3B-203ENST00000478840 ALG8Q9BVK2 526 aa5.73□□□□□ -1.49
UPF3B-203ENST00000478840 ARHGAP39Q9C0H5 1083 aa5.73□□□□□ -1.49
UPF3B-203ENST00000478840 TAOK3Q9H2K8 898 aa5.73□□□□□ -1.49
UPF3B-203ENST00000478840 ZNF703Q9H7S9 590 aaPredicted RBP5.73□□□□□ -1.49
UPF3B-203ENST00000478840 NSMCE4AQ9NXX6 385 aa5.73□□□□□ -1.49
UPF3B-203ENST00000478840 ORC3Q9UBD5 711 aaPredicted RBP5.73□□□□□ -1.49
UPF3B-203ENST00000478840 CNPY2Q9Y2B0 182 aa5.73□□□□□ -1.49
UPF3B-203ENST00000478840 GDAQ9Y2T3 454 aa5.73□□□□□ -1.49
UPF3B-203ENST00000478840 PCDHA10Q9Y5I2 948 aa5.73□□□□□ -1.49
UPF3B-203ENST00000478840 WDR27A2RRH5 827 aa5.72□□□□□ -1.49
UPF3B-203ENST00000478840 PI4KAP2A4QPH2 592 aa5.72□□□□□ -1.49
UPF3B-203ENST00000478840 SPTLC2O15270 562 aa5.72□□□□□ -1.49
UPF3B-203ENST00000478840 FIBPO43427 364 aa5.72□□□□□ -1.49
UPF3B-203ENST00000478840 PRICKLE3O43900 615 aaPredicted RBP5.72□□□□□ -1.49
UPF3B-203ENST00000478840 DHX16O60231 1041 aaKnown RBP5.72□□□□□ -1.49
UPF3B-203ENST00000478840 GFPT2O94808 682 aa5.72□□□□□ -1.49
UPF3B-203ENST00000478840 ITGB3P05106 788 aa5.72□□□□□ -1.49
UPF3B-203ENST00000478840 YY1P25490 414 aa5.72□□□□□ -1.49
UPF3B-203ENST00000478840 FZD5Q13467 585 aa5.72□□□□□ -1.49
UPF3B-203ENST00000478840 BFSP2Q13515 415 aa5.72□□□□□ -1.49
UPF3B-203ENST00000478840 CBFBQ13951 182 aa5.72□□□□□ -1.49
UPF3B-203ENST00000478840 CAMK1Q14012 370 aa5.72□□□□□ -1.49
UPF3B-203ENST00000478840 ERV3-1Q14264 604 aa5.72□□□□□ -1.49
UPF3B-203ENST00000478840 KRT32Q14532 448 aa5.72□□□□□ -1.49
UPF3B-203ENST00000478840 ICAM4Q14773 271 aa5.72□□□□□ -1.49
UPF3B-203ENST00000478840 CYP1B1Q16678 543 aa5.72□□□□□ -1.49
UPF3B-203ENST00000478840 TREML2Q5T2D2 321 aa5.72□□□□□ -1.49
UPF3B-203ENST00000478840 C16orf89Q6UX73 402 aa5.72□□□□□ -1.49
UPF3B-203ENST00000478840 TMTC3Q6ZXV5 915 aa5.72□□□□□ -1.49
UPF3B-203ENST00000478840 H1FNTQ75WM6 255 aaPredicted RBP5.72□□□□□ -1.49
UPF3B-203ENST00000478840 PDILTQ8N807 584 aa5.72□□□□□ -1.49
UPF3B-203ENST00000478840 LSM14AQ8ND56 463 aaKnown RBP5.72□□□□□ -1.49
UPF3B-203ENST00000478840 TRMT61AQ96FX7 289 aaKnown RBP5.72□□□□□ -1.49
UPF3B-203ENST00000478840 RBM17Q96I25 401 aaKnown RBP5.72□□□□□ -1.49
UPF3B-203ENST00000478840 APOPT1Q96IL0 206 aa5.72□□□□□ -1.49
UPF3B-203ENST00000478840 PGBD1Q96JS3 809 aa5.72□□□□□ -1.49
UPF3B-203ENST00000478840 HERC2P3Q9BVR0 1158 aa5.72□□□□□ -1.49
UPF3B-203ENST00000478840 SYNPO2LQ9H987 977 aa5.72□□□□□ -1.49
UPF3B-203ENST00000478840 IL21RQ9HBE5 538 aa5.72□□□□□ -1.49
UPF3B-203ENST00000478840 CNOT7Q9UIV1 285 aaKnown RBP5.72□□□□□ -1.49
UPF3B-203ENST00000478840 TRPC5Q9UL62 973 aaPredicted RBP5.72□□□□□ -1.49
UPF3B-203ENST00000478840 ADGRA2Q96PE1 1338 aa5.72□□□□□ -1.49
UPF3B-203ENST00000478840 CYP3A7-CYP3A51PA0A087WV96 503 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 TBC1D3DA0A087WVF3 549 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 TBC1D3IA0A087WXS9 549 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 TBC1D3EA0A087X179 549 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 TBC1D3KA0A087X1G2 549 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 FSD2A1L4K1 749 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 TBC1D3BA6NDS4 549 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 TBC1D3FA6NER0 549 aaPredicted RBP5.71□□□□□ -1.5
UPF3B-203ENST00000478840 C3orf70A6NLC5 250 aaPredicted RBP5.71□□□□□ -1.5
UPF3B-203ENST00000478840 TBC1D3LB9A6J9 549 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 TULP3O75386 442 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 SPDEFO95238 335 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 NDUFA10O95299 355 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 TBC1D3HP0C7X1 549 aa5.71□□□□□ -1.5
UPF3B-203ENST00000478840 ACP5P13686 325 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms