RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 E2F8A0AVK6 867 aa19.74■□□□□ 0.75
VIM-203ENST00000469543 WDR27A2RRH5 827 aa19.74■□□□□ 0.75
VIM-203ENST00000469543 FAM72CH0Y354 149 aa19.74■□□□□ 0.75
VIM-203ENST00000469543 MFSD11O43934 449 aa19.74■□□□□ 0.75
VIM-203ENST00000469543 KITP10721 976 aa19.74■□□□□ 0.75
VIM-203ENST00000469543 GM2AP17900 193 aa19.74■□□□□ 0.75
VIM-203ENST00000469543 SERPINB3P29508 390 aa19.74■□□□□ 0.75
VIM-203ENST00000469543 ALDH3A1P30838 453 aa19.74■□□□□ 0.75
VIM-203ENST00000469543 SULT1E1P49888 294 aa19.74■□□□□ 0.75
VIM-203ENST00000469543 SESN2P58004 480 aaPredicted RBP19.74■□□□□ 0.75
VIM-203ENST00000469543 AP1B1Q10567 949 aa19.74■□□□□ 0.75
VIM-203ENST00000469543 MFSD10Q14728 455 aa19.74■□□□□ 0.75
VIM-203ENST00000469543 PREPLQ4J6C6 727 aaPredicted RBP19.74■□□□□ 0.75
VIM-203ENST00000469543 FAM72AQ5TYM5 149 aa19.74■□□□□ 0.75
VIM-203ENST00000469543 ARHGAP17Q68EM7 881 aa19.74■□□□□ 0.75
VIM-203ENST00000469543 HEATR6Q6AI08 1181 aaKnown RBP19.74■□□□□ 0.75
VIM-203ENST00000469543 FAM72DQ6L9T8 149 aa19.74■□□□□ 0.75
VIM-203ENST00000469543 PAQR9Q6ZVX9 377 aa19.74■□□□□ 0.75
VIM-203ENST00000469543 CLNKQ7Z7G1 428 aa19.74■□□□□ 0.75
VIM-203ENST00000469543 ZNF467Q7Z7K2 595 aaPredicted RBP19.74■□□□□ 0.75
VIM-203ENST00000469543 UNC93AQ86WB7 457 aa19.74■□□□□ 0.75
VIM-203ENST00000469543 FAM72BQ86X60 149 aa19.74■□□□□ 0.75
VIM-203ENST00000469543 ADGRF2Q8IZF7 708 aa19.74■□□□□ 0.75
VIM-203ENST00000469543 TTC39CQ8N584 583 aa19.74■□□□□ 0.75
VIM-203ENST00000469543 SMG8Q8ND04 991 aaKnown RBP19.74■□□□□ 0.75
VIM-203ENST00000469543 TACO1Q9BSH4 297 aaKnown RBP19.74■□□□□ 0.75
VIM-203ENST00000469543 TBC1D10AQ9BXI6 508 aa19.74■□□□□ 0.75
VIM-203ENST00000469543 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP19.74■□□□□ 0.75
VIM-203ENST00000469543 MARCOQ9UEW3 520 aaPredicted RBP19.74■□□□□ 0.75
VIM-203ENST00000469543 ZFP69BQ9UJL9 534 aa19.74■□□□□ 0.75
VIM-203ENST00000469543 GNEQ9Y223 722 aaKnown RBP19.74■□□□□ 0.75
VIM-203ENST00000469543 I6L893 689 aaPredicted RBP19.74■□□□□ 0.75
VIM-203ENST00000469543 COPEO14579 308 aa19.74■□□□□ 0.75
VIM-203ENST00000469543 APOEP02649 317 aa19.74■□□□□ 0.75
VIM-203ENST00000469543 MYL3P08590 195 aa19.74■□□□□ 0.75
VIM-203ENST00000469543 DHRS4L1P0CG22 281 aa19.74■□□□□ 0.75
VIM-203ENST00000469543 RARBP10826 455 aa19.74■□□□□ 0.75
VIM-203ENST00000469543 PTPN9P43378 593 aa19.74■□□□□ 0.75
VIM-203ENST00000469543 SERPINB4P48594 390 aa19.74■□□□□ 0.75
VIM-203ENST00000469543 SLC18A2Q05940 514 aa19.74■□□□□ 0.75
VIM-203ENST00000469543 CCDC15Q0P6D6 951 aa19.74■□□□□ 0.75
VIM-203ENST00000469543 OTUD1Q5VV17 481 aaPredicted RBP19.74■□□□□ 0.75
VIM-203ENST00000469543 ZCCHC23Q6ZST2 131 aa19.74■□□□□ 0.75
VIM-203ENST00000469543 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP19.74■□□□□ 0.75
VIM-203ENST00000469543 B3GALNT2Q8NCR0 500 aa19.74■□□□□ 0.75
VIM-203ENST00000469543 CCNYQ8ND76 341 aa19.74■□□□□ 0.75
VIM-203ENST00000469543 OXNAD1Q96HP4 312 aaPredicted RBP19.74■□□□□ 0.75
VIM-203ENST00000469543 PCMTD2Q9NV79 361 aa19.74■□□□□ 0.75
VIM-203ENST00000469543 TMEM30AQ9NV96 361 aa19.74■□□□□ 0.75
VIM-203ENST00000469543 GLTPD2A6NH11 291 aa19.73■□□□□ 0.75
VIM-203ENST00000469543 ANP32DO95626 131 aa19.73■□□□□ 0.75
VIM-203ENST00000469543 CTC1Q2NKJ3 1217 aa19.73■□□□□ 0.75
VIM-203ENST00000469543 WLSQ5T9L3 541 aa19.73■□□□□ 0.75
VIM-203ENST00000469543 TTC39BQ5VTQ0 682 aaPredicted RBP19.73■□□□□ 0.75
VIM-203ENST00000469543 STK32AQ8WU08 396 aa19.73■□□□□ 0.75
VIM-203ENST00000469543 ARMCX1Q9P291 453 aa19.73■□□□□ 0.75
VIM-203ENST00000469543 NKX1-2Q9UD57 310 aaPredicted RBP19.73■□□□□ 0.75
VIM-203ENST00000469543 USP3Q9Y6I4 520 aa19.73■□□□□ 0.75
VIM-203ENST00000469543 RRN3P2A6NIE6 340 aa19.73■□□□□ 0.75
VIM-203ENST00000469543 KCNK1O00180 336 aa19.73■□□□□ 0.75
VIM-203ENST00000469543 SMAPO00193 183 aa19.73■□□□□ 0.75
VIM-203ENST00000469543 MAP3K7CLP57077 242 aa19.73■□□□□ 0.75
VIM-203ENST00000469543 ANKRD20A2Q5SQ80 823 aa19.73■□□□□ 0.75
VIM-203ENST00000469543 ANKRD20A1Q5TYW2 823 aa19.73■□□□□ 0.75
VIM-203ENST00000469543 ANKRD20A3Q5VUR7 823 aa19.73■□□□□ 0.75
VIM-203ENST00000469543 TWF2Q6IBS0 349 aaKnown RBP19.73■□□□□ 0.75
VIM-203ENST00000469543 HTR3CQ8WXA8 447 aa19.73■□□□□ 0.75
VIM-203ENST00000469543 ARHGEF4Q9NR80 690 aa19.73■□□□□ 0.75
VIM-203ENST00000469543 DERAQ9Y315 318 aa19.73■□□□□ 0.75
VIM-203ENST00000469543 MBLAC1A4D2B0 266 aaPredicted RBP19.72■□□□□ 0.75
VIM-203ENST00000469543 M0QYT0 321 aa19.72■□□□□ 0.75
VIM-203ENST00000469543 NRP1O14786 923 aa19.72■□□□□ 0.75
VIM-203ENST00000469543 HUS1O60921 280 aa19.72■□□□□ 0.75
VIM-203ENST00000469543 USP12O75317 370 aa19.72■□□□□ 0.75
VIM-203ENST00000469543 GCATO75600 419 aa19.72■□□□□ 0.75
VIM-203ENST00000469543 SETSIPP0DME0 302 aa19.72■□□□□ 0.75
VIM-203ENST00000469543 CACNA2D1P54289 1103 aa19.72■□□□□ 0.75
VIM-203ENST00000469543 RIPK1Q13546 671 aa19.72■□□□□ 0.75
VIM-203ENST00000469543 PRKD1Q15139 912 aaPredicted RBP19.72■□□□□ 0.75
VIM-203ENST00000469543 FYB2Q5VWT5 728 aa19.72■□□□□ 0.75
VIM-203ENST00000469543 NME8Q8N427 588 aa19.72■□□□□ 0.75
VIM-203ENST00000469543 EBNA1BP2Q99848 306 aaKnown RBP19.72■□□□□ 0.75
VIM-203ENST00000469543 RHOBTB2Q9BYZ6 727 aa19.72■□□□□ 0.75
VIM-203ENST00000469543 PIGVQ9NUD9 493 aa19.72■□□□□ 0.75
VIM-203ENST00000469543 NUP205Q92621 2012 aa19.72■□□□□ 0.75
VIM-203ENST00000469543 SMIM35A0A1B0GVV1 85 aa19.72■□□□□ 0.75
VIM-203ENST00000469543 C2CD2LO14523 706 aa19.72■□□□□ 0.75
VIM-203ENST00000469543 PTGESO14684 152 aa19.72■□□□□ 0.75
VIM-203ENST00000469543 DCTN3O75935 186 aa19.72■□□□□ 0.75
VIM-203ENST00000469543 SNRPAP09012 282 aaKnown RBP19.72■□□□□ 0.75
VIM-203ENST00000469543 DLDP09622 509 aaKnown RBP19.72■□□□□ 0.75
VIM-203ENST00000469543 CYP2B6P20813 491 aa19.72■□□□□ 0.75
VIM-203ENST00000469543 MATKP42679 507 aa19.72■□□□□ 0.75
VIM-203ENST00000469543 TAF6P49848 677 aa19.72■□□□□ 0.75
VIM-203ENST00000469543 UPF1Q92900 1129 aaKnown RBP eCLIP19.72■□□□□ 0.75
VIM-203ENST00000469543 LPPQ93052 612 aa19.72■□□□□ 0.75
VIM-203ENST00000469543 ALKBH8Q96BT7 664 aaKnown RBP19.72■□□□□ 0.75
VIM-203ENST00000469543 PAAF1Q9BRP4 392 aa19.72■□□□□ 0.75
VIM-203ENST00000469543 IQCGQ9H095 443 aaKnown RBP19.72■□□□□ 0.75
VIM-203ENST00000469543 ARL8BQ9NVJ2 186 aa19.72■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms