RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 METTL23Q86XA0 190 aa5.63□□□□□ -1.51
PTPN4-209ENST00000469511 CACUL1Q86Y37 369 aa5.63□□□□□ -1.51
PTPN4-209ENST00000469511 GATAD2AQ86YP4 633 aa5.63□□□□□ -1.51
PTPN4-209ENST00000469511 BBS7Q8IWZ6 715 aa5.63□□□□□ -1.51
PTPN4-209ENST00000469511 SPACA3Q8IXA5 215 aa5.63□□□□□ -1.51
PTPN4-209ENST00000469511 VWA5B2Q8N398 1253 aa5.63□□□□□ -1.51
PTPN4-209ENST00000469511 GALNT15Q8N3T1 639 aa5.63□□□□□ -1.51
PTPN4-209ENST00000469511 TERB1Q8NA31 727 aa5.63□□□□□ -1.51
PTPN4-209ENST00000469511 LSM14AQ8ND56 463 aaKnown RBP5.63□□□□□ -1.51
PTPN4-209ENST00000469511 NSUN7Q8NE18 718 aaKnown RBP5.63□□□□□ -1.51
PTPN4-209ENST00000469511 CXorf38Q8TB03 319 aa5.63□□□□□ -1.51
PTPN4-209ENST00000469511 PMEPA1Q969W9 287 aa5.63□□□□□ -1.51
PTPN4-209ENST00000469511 BICD1Q96G01 975 aa5.63□□□□□ -1.51
PTPN4-209ENST00000469511 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP5.63□□□□□ -1.51
PTPN4-209ENST00000469511 CCSER1Q9C0I3 900 aa5.63□□□□□ -1.51
PTPN4-209ENST00000469511 MKRN2Q9H000 416 aaKnown RBP5.63□□□□□ -1.51
PTPN4-209ENST00000469511 FAM124BQ9H5Z6 455 aaPredicted RBP5.63□□□□□ -1.51
PTPN4-209ENST00000469511 CAAP1Q9H8G2 361 aa5.63□□□□□ -1.51
PTPN4-209ENST00000469511 CRTAC1Q9NQ79 661 aa5.63□□□□□ -1.51
PTPN4-209ENST00000469511 UXTQ9UBK9 157 aaPredicted RBP5.63□□□□□ -1.51
PTPN4-209ENST00000469511 NXF1Q9UBU9 619 aaKnown RBP5.63□□□□□ -1.51
PTPN4-209ENST00000469511 CYP46A1Q9Y6A2 500 aa5.63□□□□□ -1.51
PTPN4-209ENST00000469511 AK5Q9Y6K8 562 aa5.63□□□□□ -1.51
PTPN4-209ENST00000469511 TEX15Q9BXT5 2789 aa5.63□□□□□ -1.51
PTPN4-209ENST00000469511 NBPF19A0A087WUL8 3843 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 CACNA1DQ01668 2161 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 NBASA2RRP1 2371 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 SPTAN1Q13813 2472 aaKnown RBP5.62□□□□□ -1.51
PTPN4-209ENST00000469511 TEX51A0A1B0GUA7 166 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 METTL12A8MUP2 240 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 MEI4A8MW99 385 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 B8ZZF3 427 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 BCAT2O15382 392 aaPredicted RBP5.62□□□□□ -1.51
PTPN4-209ENST00000469511 FLRT2O43155 660 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 TNFSF14O43557 240 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 XPOTO43592 962 aaKnown RBP5.62□□□□□ -1.51
PTPN4-209ENST00000469511 PHACTR2O75167 634 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 SASH3O75995 380 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 WISP1O95388 367 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 CISD3P0C7P0 127 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 ZNF883P0CG24 379 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 IRF1P10914 325 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 MBL2P11226 248 aaPredicted RBP5.62□□□□□ -1.51
PTPN4-209ENST00000469511 HLA-EP13747 358 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 JUPP14923 745 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 GNSP15586 552 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 XBP1P17861 261 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 PLCG1P19174 1290 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 CD33P20138 364 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 BDNFP23560 247 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 CD6P30203 668 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 POLR2BP30876 1174 aaKnown RBP5.62□□□□□ -1.51
PTPN4-209ENST00000469511 EIF2DP41214 584 aaKnown RBP5.62□□□□□ -1.51
PTPN4-209ENST00000469511 LIG4P49917 911 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 TOB1P50616 345 aaPredicted RBP5.62□□□□□ -1.51
PTPN4-209ENST00000469511 NCKAP1LP55160 1127 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 NFKB2Q00653 900 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 TSPY1Q01534 308 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 GAD2Q05329 585 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 IFRD2Q12894 506 aaPredicted RBP5.62□□□□□ -1.51
PTPN4-209ENST00000469511 TAF10Q12962 218 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 ZRSR1Q15695 479 aaKnown RBP5.62□□□□□ -1.51
PTPN4-209ENST00000469511 NFE2Q16621 373 aaPredicted RBP5.62□□□□□ -1.51
PTPN4-209ENST00000469511 SOWAHAQ2M3V2 549 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 ANO4Q32M45 955 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 FUT11Q495W5 492 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 TAF1BQ53T94 588 aaPredicted RBP5.62□□□□□ -1.51
PTPN4-209ENST00000469511 COLEC12Q5KU26 742 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 WDR45BQ5MNZ6 344 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 ARHGAP40Q5TG30 622 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 TTC39BQ5VTQ0 682 aaPredicted RBP5.62□□□□□ -1.51
PTPN4-209ENST00000469511 FAM171BQ6P995 826 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 RABEPKQ7Z6M1 372 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 FAM124AQ86V42 546 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 SPATA2LQ8IUW3 424 aaPredicted RBP5.62□□□□□ -1.51
PTPN4-209ENST00000469511 CHPFQ8IZ52 775 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 IGSF22Q8N9C0 903 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 OR13H1Q8NG92 308 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 CCDC26Q8TAB7 109 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 ERMNQ8TAM6 284 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 LEO1Q8WVC0 666 aaPredicted RBP5.62□□□□□ -1.51
PTPN4-209ENST00000469511 MYLPFQ96A32 169 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 MRRFQ96E11 262 aaKnown RBP5.62□□□□□ -1.51
PTPN4-209ENST00000469511 DRC1Q96MC2 740 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 FRMD6Q96NE9 622 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 FIZ1Q96SL8 496 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 SLC30A3Q99726 388 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 CDC6Q99741 560 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 GABRG3Q99928 467 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 ACBD6Q9BR61 282 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 MSTO1Q9BUK6 570 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 C6orf106Q9H6K1 298 aaPredicted RBP5.62□□□□□ -1.51
PTPN4-209ENST00000469511 CCSER2Q9H7U1 834 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 ITM2CQ9NQX7 267 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 PLK2Q9NYY3 685 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 TRPM5Q9NZQ8 1165 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 ZFATQ9P243 1243 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 USP36Q9P275 1121 aaKnown RBP5.62□□□□□ -1.51
PTPN4-209ENST00000469511 DEC1Q9P2X7 70 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 SUSD2Q9UGT4 822 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms