RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 CLPTM1LQ96KA5 538 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 TRIB1Q96RU8 372 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 SMOQ99835 787 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 SLF1Q9BQI6 1058 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 FAM204AQ9H8W3 233 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 PAPOLBQ9NRJ5 636 aaKnown RBP5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 OLA1Q9NTK5 396 aaKnown RBP5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 AIPL1Q9NZN9 384 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 SH3BGRL2Q9UJC5 107 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 ADAM21Q9UKJ8 722 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 POLHQ9Y253 713 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 PCDHGB6Q9Y5F9 930 aa5.26□□□□□ -1.57
CCDC88A-210ENST00000468534 ABCC9O60706 1549 aa5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 LINC00854A0A1B0GVQ3 168 aa5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 M0QX08 132 aa5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 FYB1O15117 783 aa5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 SLC7A4O43246 635 aa5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 CCP110O43303 1012 aa5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 XPOTO43592 962 aaKnown RBP5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 AP1G1O43747 822 aa5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 TPM3P06753 285 aa5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 MYBP10242 640 aa5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 VEGFAP15692 232 aaPredicted RBP5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 ABCB4P21439 1286 aa5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 MCM2P49736 904 aa5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 IL1RL1Q01638 556 aa5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 ICA1Q05084 483 aa5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 FCRLBQ6BAA4 426 aa5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 ALKBH5Q6P6C2 394 aaKnown RBP5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 RFX8Q6ZV50 586 aa5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 FAM47EQ6ZV65 393 aa5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 DPP9Q86TI2 863 aa5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 HEATR4Q86WZ0 1026 aa5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 AOPEPQ8N6M6 819 aa5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 DRAXINQ8NBI3 349 aaPredicted RBP5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 IPMKQ8NFU5 416 aa5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 TDRD7Q8NHU6 1098 aaKnown RBP5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 KIAA1524Q8TCG1 905 aa5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 UTP15Q8TED0 518 aaKnown RBP5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 C17orf50Q8WW18 174 aa5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 ASB12Q8WXK4 309 aa5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 SSH1Q8WYL5 1049 aa5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 KIAA1191Q96A73 305 aa5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 CFAP36Q96G28 342 aa5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 FAXDC2Q96IV6 333 aa5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 FAM81BQ96LP2 452 aa5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 ZSCAN31Q96LW9 406 aaPredicted RBP5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 TMEM120AQ9BXJ8 343 aa5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 XAB2Q9HCS7 855 aaKnown RBP5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 TCF7L2Q9NQB0 619 aa5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 AASSQ9UDR5 926 aa5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 LIMCH1Q9UPQ0 1083 aa5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 ZNF711Q9Y462 761 aa5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 ANGPTL3Q9Y5C1 460 aa5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 ZFP37Q9Y6Q3 630 aaPredicted RBP5.25□□□□□ -1.57
CCDC88A-210ENST00000468534 CCDC154A6NI56 674 aa5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 E9PLN8 166 aa5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 F5H697 171 aa5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 H0Y626 953 aa5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 HTRA2O43464 458 aaPredicted RBP5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 TSPAN3O60637 253 aa5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 MTRF1O75570 445 aaKnown RBP5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 URI1O94763 535 aaPredicted RBP5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 USP1O94782 785 aa5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 SNX4O95219 450 aa5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 CSTBP04080 98 aaKnown RBP5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 PRKCGP05129 697 aa5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 POLBP06746 335 aa5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 CELA2AP08217 269 aa5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 NR2F6P10588 404 aa5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 HSPA5P11021 654 aaKnown RBP5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 HDCP19113 662 aa5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 ITPKBP27987 946 aa5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 ATP5DP30049 168 aa5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 HSPA1LP34931 641 aa5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 HADHAP40939 763 aa5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 MTHFRP42898 656 aa5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 ARL4CP56559 192 aa5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 POLR2FP61218 127 aaKnown RBP5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 KIF23Q02241 960 aaPredicted RBP5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 ITIH3Q06033 890 aa5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 ZNF267Q14586 743 aaPredicted RBP5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 HLXQ14774 488 aaPredicted RBP5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 RAB39AQ14964 217 aa5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 OASLQ15646 514 aaKnown RBP5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 EZH2Q15910 746 aaKnown RBP5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 LIN54Q6MZP7 749 aa5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 RPUSD3Q6P087 351 aaKnown RBP5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 PPP1R42Q7Z4L9 355 aa5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 DNAJB7Q7Z6W7 309 aaPredicted RBP5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 ZBTB34Q8NCN2 500 aa5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 UCMAQ8WVF2 138 aa5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 TRAPPC12Q8WVT3 735 aa5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 ATP2A3Q93084 1043 aa5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 KIF1BPQ96EK5 621 aa5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 CLMNQ96JQ2 1002 aa5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 VKORC1Q9BQB6 163 aa5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 TPSD1Q9BZJ3 242 aa5.24□□□□□ -1.57
CCDC88A-210ENST00000468534 SLC7A5P2Q9GIP4 190 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms