RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 ATXN2Q99700 1313 aaKnown RBP12.55□□□□□ -0.4
SQSTM1-206ENST00000466342 ANAPC1Q9H1A4 1944 aa12.54□□□□□ -0.4
SQSTM1-206ENST00000466342 GOLGA6L19H0YKK7 550 aa12.54□□□□□ -0.4
SQSTM1-206ENST00000466342 K7EQS6 105 aa12.54□□□□□ -0.4
SQSTM1-206ENST00000466342 TADA3O75528 432 aa12.54□□□□□ -0.4
SQSTM1-206ENST00000466342 SYPP08247 313 aa12.54□□□□□ -0.4
SQSTM1-206ENST00000466342 USP17L7P0C7H9 530 aa12.54□□□□□ -0.4
SQSTM1-206ENST00000466342 PFKLP17858 780 aa12.54□□□□□ -0.4
SQSTM1-206ENST00000466342 ACO1P21399 889 aaKnown RBP12.54□□□□□ -0.4
SQSTM1-206ENST00000466342 ANXA13P27216 316 aa12.54□□□□□ -0.4
SQSTM1-206ENST00000466342 PPP3CCP48454 512 aa12.54□□□□□ -0.4
SQSTM1-206ENST00000466342 ZNF394Q53GI3 561 aa12.54□□□□□ -0.4
SQSTM1-206ENST00000466342 GJB7Q6PEY0 223 aa12.54□□□□□ -0.4
SQSTM1-206ENST00000466342 TMEM92Q6UXU6 159 aa12.54□□□□□ -0.4
SQSTM1-206ENST00000466342 DENND5BQ6ZUT9 1274 aa12.54□□□□□ -0.4
SQSTM1-206ENST00000466342 TMPRSS7Q7RTY8 843 aa12.54□□□□□ -0.4
SQSTM1-206ENST00000466342 FAM35AQ86V20 835 aa12.54□□□□□ -0.4
SQSTM1-206ENST00000466342 ZNF843Q8N446 348 aa12.54□□□□□ -0.4
SQSTM1-206ENST00000466342 CCDC33Q8N5R6 958 aa12.54□□□□□ -0.4
SQSTM1-206ENST00000466342 SLC4A11Q8NBS3 891 aa12.54□□□□□ -0.4
SQSTM1-206ENST00000466342 STKLD1Q8NE28 680 aa12.54□□□□□ -0.4
SQSTM1-206ENST00000466342 OR2I1PQ8NGU4 316 aa12.54□□□□□ -0.4
SQSTM1-206ENST00000466342 TMEM176AQ96HP8 235 aa12.54□□□□□ -0.4
SQSTM1-206ENST00000466342 TTLL2Q9BWV7 592 aa12.54□□□□□ -0.4
SQSTM1-206ENST00000466342 UBE2TQ9NPD8 197 aaPredicted RBP12.54□□□□□ -0.4
SQSTM1-206ENST00000466342 PCDHB4Q9Y5E5 795 aa12.54□□□□□ -0.4
SQSTM1-206ENST00000466342 ATP8B3O60423 1300 aa12.54□□□□□ -0.4
SQSTM1-206ENST00000466342 MYO18BQ8IUG5 2567 aa12.53□□□□□ -0.4
SQSTM1-206ENST00000466342 TRAV19A0A0A6YYK7 116 aa12.53□□□□□ -0.4
SQSTM1-206ENST00000466342 J3QKU1 62 aa12.53□□□□□ -0.4
SQSTM1-206ENST00000466342 CLDN5O00501 218 aa12.53□□□□□ -0.4
SQSTM1-206ENST00000466342 GJB3O75712 270 aa12.53□□□□□ -0.4
SQSTM1-206ENST00000466342 CCDC130P13994 396 aa12.53□□□□□ -0.4
SQSTM1-206ENST00000466342 ABCG1P45844 678 aa12.53□□□□□ -0.4
SQSTM1-206ENST00000466342 PDE6CP51160 858 aa12.53□□□□□ -0.4
SQSTM1-206ENST00000466342 MFAP3P55082 362 aa12.53□□□□□ -0.4
SQSTM1-206ENST00000466342 APBA1Q02410 837 aa12.53□□□□□ -0.4
SQSTM1-206ENST00000466342 CYP4F3Q08477 520 aa12.53□□□□□ -0.4
SQSTM1-206ENST00000466342 NR1H3Q13133 447 aa12.53□□□□□ -0.4
SQSTM1-206ENST00000466342 MAP7D1Q3KQU3 841 aa12.53□□□□□ -0.4
SQSTM1-206ENST00000466342 DPY19L2P1Q6NXN4 242 aa12.53□□□□□ -0.4
SQSTM1-206ENST00000466342 TMEM270Q6UE05 265 aa12.53□□□□□ -0.4
SQSTM1-206ENST00000466342 PAQR9Q6ZVX9 377 aa12.53□□□□□ -0.4
SQSTM1-206ENST00000466342 GLRX5Q86SX6 157 aa12.53□□□□□ -0.4
SQSTM1-206ENST00000466342 FUKQ8N0W3 1084 aa12.53□□□□□ -0.4
SQSTM1-206ENST00000466342 C12orf29Q8N999 325 aa12.53□□□□□ -0.4
SQSTM1-206ENST00000466342 RIN3Q8TB24 985 aa12.53□□□□□ -0.4
SQSTM1-206ENST00000466342 OSCP1Q8WVF1 389 aa12.53□□□□□ -0.4
SQSTM1-206ENST00000466342 SMARCD1Q96GM5 515 aa12.53□□□□□ -0.4
SQSTM1-206ENST00000466342 CYP2S1Q96SQ9 504 aa12.53□□□□□ -0.4
SQSTM1-206ENST00000466342 HNRNPABQ99729 332 aaKnown RBP12.53□□□□□ -0.4
SQSTM1-206ENST00000466342 MED10Q9BTT4 135 aa12.53□□□□□ -0.4
SQSTM1-206ENST00000466342 ZNF518BQ9C0D4 1074 aa12.53□□□□□ -0.4
SQSTM1-206ENST00000466342 PLCB1Q9NQ66 1216 aa12.53□□□□□ -0.4
SQSTM1-206ENST00000466342 FAM49BQ9NUQ9 324 aa12.53□□□□□ -0.4
SQSTM1-206ENST00000466342 DUS2Q9NX74 493 aaKnown RBP12.53□□□□□ -0.4
SQSTM1-206ENST00000466342 TRPM5Q9NZQ8 1165 aa12.53□□□□□ -0.4
SQSTM1-206ENST00000466342 CNTN6Q9UQ52 1028 aa12.53□□□□□ -0.4
SQSTM1-206ENST00000466342 CFAP46Q8IYW2 2715 aa12.53□□□□□ -0.4
SQSTM1-206ENST00000466342 TRABD2BA6NFA1 517 aa12.52□□□□□ -0.41
SQSTM1-206ENST00000466342 F8VP50 259 aa12.52□□□□□ -0.41
SQSTM1-206ENST00000466342 AP5Z1O43299 807 aa12.52□□□□□ -0.41
SQSTM1-206ENST00000466342 CKMP06732 381 aa12.52□□□□□ -0.41
SQSTM1-206ENST00000466342 PAEPP09466 180 aa12.52□□□□□ -0.41
SQSTM1-206ENST00000466342 HNRNPLP14866 589 aaKnown RBP eCLIP12.52□□□□□ -0.41
SQSTM1-206ENST00000466342 TCF3P15923 654 aa12.52□□□□□ -0.41
SQSTM1-206ENST00000466342 HDCP19113 662 aa12.52□□□□□ -0.41
SQSTM1-206ENST00000466342 ZNF132P52740 706 aa12.52□□□□□ -0.41
SQSTM1-206ENST00000466342 SEC13P55735 322 aa12.52□□□□□ -0.41
SQSTM1-206ENST00000466342 MRPS21P82921 87 aaKnown RBP12.52□□□□□ -0.41
SQSTM1-206ENST00000466342 UBXN1Q04323 297 aa12.52□□□□□ -0.41
SQSTM1-206ENST00000466342 FILIP1LQ4L180 1135 aa12.52□□□□□ -0.41
SQSTM1-206ENST00000466342 KLHDC7AQ5VTJ3 777 aa12.52□□□□□ -0.41
SQSTM1-206ENST00000466342 ARHGAP17Q68EM7 881 aa12.52□□□□□ -0.41
SQSTM1-206ENST00000466342 SMYD5Q6GMV2 418 aa12.52□□□□□ -0.41
SQSTM1-206ENST00000466342 NAXDQ8IW45 347 aa12.52□□□□□ -0.41
SQSTM1-206ENST00000466342 ARL14EPQ8N8R7 260 aaPredicted RBP12.52□□□□□ -0.41
SQSTM1-206ENST00000466342 RBBP8NLQ8NC74 664 aaPredicted RBP12.52□□□□□ -0.41
SQSTM1-206ENST00000466342 SLC2A14Q8TDB8 520 aa12.52□□□□□ -0.41
SQSTM1-206ENST00000466342 ATP2A3Q93084 1043 aa12.52□□□□□ -0.41
SQSTM1-206ENST00000466342 CYFIP2Q96F07 1278 aa12.52□□□□□ -0.41
SQSTM1-206ENST00000466342 HEXIM2Q96MH2 286 aaKnown RBP12.52□□□□□ -0.41
SQSTM1-206ENST00000466342 ERGIC2Q96RQ1 377 aa12.52□□□□□ -0.41
SQSTM1-206ENST00000466342 SLC22A12Q96S37 553 aa12.52□□□□□ -0.41
SQSTM1-206ENST00000466342 TRPC7Q9HCX4 862 aa12.52□□□□□ -0.41
SQSTM1-206ENST00000466342 KRT82Q9NSB4 513 aa12.52□□□□□ -0.41
SQSTM1-206ENST00000466342 DNAJC12Q9UKB3 198 aa12.52□□□□□ -0.41
SQSTM1-206ENST00000466342 AJAP1Q9UKB5 411 aaPredicted RBP12.52□□□□□ -0.41
SQSTM1-206ENST00000466342 SIK3Q9Y2K2 1263 aa12.52□□□□□ -0.41
SQSTM1-206ENST00000466342 MYOFQ9NZM1 2061 aa12.52□□□□□ -0.41
SQSTM1-206ENST00000466342 ZNF462Q96JM2 2506 aa12.51□□□□□ -0.41
SQSTM1-206ENST00000466342 A0A1B0GTH6 734 aa12.51□□□□□ -0.41
SQSTM1-206ENST00000466342 C2orf78A6NCI8 922 aa12.51□□□□□ -0.41
SQSTM1-206ENST00000466342 ANTXRLA6NF34 631 aa12.51□□□□□ -0.41
SQSTM1-206ENST00000466342 RNF225M0QZC1 329 aaPredicted RBP12.51□□□□□ -0.41
SQSTM1-206ENST00000466342 SERPINC1P01008 464 aa12.51□□□□□ -0.41
SQSTM1-206ENST00000466342 FAM200BP0CF97 657 aa12.51□□□□□ -0.41
SQSTM1-206ENST00000466342 VDRP11473 427 aa12.51□□□□□ -0.41
SQSTM1-206ENST00000466342 KRT5P13647 590 aa12.51□□□□□ -0.41
SQSTM1-206ENST00000466342 UCHL3P15374 230 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms