RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 ZDHHC11BP0C7U3 371 aa18.54■□□□□ 0.56
COL7A1-205ENST00000465238 MPLP40238 635 aa18.54■□□□□ 0.56
COL7A1-205ENST00000465238 PBX1P40424 430 aa18.54■□□□□ 0.56
COL7A1-205ENST00000465238 ACADSBP45954 432 aa18.54■□□□□ 0.56
COL7A1-205ENST00000465238 TUBP50607 506 aa18.54■□□□□ 0.56
COL7A1-205ENST00000465238 DGKEP52429 567 aa18.54■□□□□ 0.56
COL7A1-205ENST00000465238 SEC13P55735 322 aa18.54■□□□□ 0.56
COL7A1-205ENST00000465238 MRPS21P82921 87 aaKnown RBP18.54■□□□□ 0.56
COL7A1-205ENST00000465238 CCDC6Q16204 474 aa18.54■□□□□ 0.56
COL7A1-205ENST00000465238 FIGNQ5HY92 759 aa18.54■□□□□ 0.56
COL7A1-205ENST00000465238 IL31Q6EBC2 164 aa18.54■□□□□ 0.56
COL7A1-205ENST00000465238 PM20D1Q6GTS8 502 aa18.54■□□□□ 0.56
COL7A1-205ENST00000465238 RHBDF2Q6PJF5 856 aa18.54■□□□□ 0.56
COL7A1-205ENST00000465238 NOP9Q86U38 636 aaKnown RBP18.54■□□□□ 0.56
COL7A1-205ENST00000465238 C11orf74Q86VG3 221 aa18.54■□□□□ 0.56
COL7A1-205ENST00000465238 ZNF677Q86XU0 584 aa18.54■□□□□ 0.56
COL7A1-205ENST00000465238 PASD1Q8IV76 773 aa18.54■□□□□ 0.56
COL7A1-205ENST00000465238 OTUB2Q96DC9 234 aa18.54■□□□□ 0.56
COL7A1-205ENST00000465238 IQCDQ96DY2 449 aa18.54■□□□□ 0.56
COL7A1-205ENST00000465238 NOX5Q96PH1 765 aa18.54■□□□□ 0.56
COL7A1-205ENST00000465238 PNKPQ96T60 521 aa18.54■□□□□ 0.56
COL7A1-205ENST00000465238 VPS45Q9NRW7 570 aa18.54■□□□□ 0.56
COL7A1-205ENST00000465238 NAGPAQ9UK23 515 aa18.54■□□□□ 0.56
COL7A1-205ENST00000465238 MMP17Q9ULZ9 603 aa18.54■□□□□ 0.56
COL7A1-205ENST00000465238 A0A1W2PQH9 124 aa18.53■□□□□ 0.56
COL7A1-205ENST00000465238 PIK3R2O00459 728 aa18.53■□□□□ 0.56
COL7A1-205ENST00000465238 SCAMP3O14828 347 aaKnown RBP18.53■□□□□ 0.56
COL7A1-205ENST00000465238 RALAP11233 206 aa18.53■□□□□ 0.56
COL7A1-205ENST00000465238 FERP16591 822 aa18.53■□□□□ 0.56
COL7A1-205ENST00000465238 SNX16P57768 344 aa18.53■□□□□ 0.56
COL7A1-205ENST00000465238 USP39Q53GS9 565 aaKnown RBP18.53■□□□□ 0.56
COL7A1-205ENST00000465238 RASSF3Q86WH2 238 aa18.53■□□□□ 0.56
COL7A1-205ENST00000465238 GAS2L3Q86XJ1 694 aa18.53■□□□□ 0.56
COL7A1-205ENST00000465238 TMEM35BQ8NCS4 154 aa18.53■□□□□ 0.56
COL7A1-205ENST00000465238 EPS8L1Q8TE68 723 aa18.53■□□□□ 0.56
COL7A1-205ENST00000465238 BAP1Q92560 729 aa18.53■□□□□ 0.56
COL7A1-205ENST00000465238 ZFRQ96KR1 1074 aaKnown RBP18.53■□□□□ 0.56
COL7A1-205ENST00000465238 SLC4A5Q9BY07 1137 aa18.53■□□□□ 0.56
COL7A1-205ENST00000465238 NACA2Q9H009 215 aa18.53■□□□□ 0.56
COL7A1-205ENST00000465238 CNGB3Q9NQW8 809 aa18.53■□□□□ 0.56
COL7A1-205ENST00000465238 CHD8Q9HCK8 2581 aa18.52■□□□□ 0.56
COL7A1-205ENST00000465238 ABCA7Q8IZY2 2146 aa18.52■□□□□ 0.56
COL7A1-205ENST00000465238 PALM2-AKAP2B1ALY0 433 aaPredicted RBP18.52■□□□□ 0.56
COL7A1-205ENST00000465238 FBXO21O94952 628 aa18.52■□□□□ 0.56
COL7A1-205ENST00000465238 KAT7O95251 611 aa18.52■□□□□ 0.56
COL7A1-205ENST00000465238 APODP05090 189 aa18.52■□□□□ 0.56
COL7A1-205ENST00000465238 ADH5P11766 374 aa18.52■□□□□ 0.56
COL7A1-205ENST00000465238 RARGP13631 454 aa18.52■□□□□ 0.56
COL7A1-205ENST00000465238 SLC6A11P48066 632 aa18.52■□□□□ 0.56
COL7A1-205ENST00000465238 YWHAGP61981 247 aaKnown RBP eCLIP18.52■□□□□ 0.56
COL7A1-205ENST00000465238 CRY1Q16526 586 aa18.52■□□□□ 0.56
COL7A1-205ENST00000465238 HSF5Q4G112 596 aaPredicted RBP18.52■□□□□ 0.56
COL7A1-205ENST00000465238 SCD5Q86SK9 330 aa18.52■□□□□ 0.56
COL7A1-205ENST00000465238 TADA2BQ86TJ2 420 aa18.52■□□□□ 0.56
COL7A1-205ENST00000465238 SCML4Q8N228 414 aa18.52■□□□□ 0.56
COL7A1-205ENST00000465238 WDTC1Q8N5D0 677 aa18.52■□□□□ 0.56
COL7A1-205ENST00000465238 ZNF397Q8NF99 534 aaPredicted RBP18.52■□□□□ 0.56
COL7A1-205ENST00000465238 CPLX3Q8WVH0 158 aa18.52■□□□□ 0.56
COL7A1-205ENST00000465238 TRIM5Q9C035 493 aa18.52■□□□□ 0.56
COL7A1-205ENST00000465238 MIS12Q9H081 205 aa18.52■□□□□ 0.56
COL7A1-205ENST00000465238 CCSER2Q9H7U1 834 aa18.52■□□□□ 0.56
COL7A1-205ENST00000465238 NMUR1Q9HB89 426 aa18.52■□□□□ 0.56
COL7A1-205ENST00000465238 CYLDQ9NQC7 956 aa18.52■□□□□ 0.56
COL7A1-205ENST00000465238 CLIC5Q9NZA1 410 aa18.52■□□□□ 0.56
COL7A1-205ENST00000465238 SH3BP1Q9Y3L3 701 aa18.52■□□□□ 0.56
COL7A1-205ENST00000465238 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.52■□□□□ 0.56
COL7A1-205ENST00000465238 NUP205Q92621 2012 aa18.51■□□□□ 0.55
COL7A1-205ENST00000465238 A0A0A0MRY4 1105 aa18.51■□□□□ 0.55
COL7A1-205ENST00000465238 LRRC53A6NM62 1247 aa18.51■□□□□ 0.55
COL7A1-205ENST00000465238 DCLK1O15075 740 aa18.51■□□□□ 0.55
COL7A1-205ENST00000465238 TLR5O60602 858 aa18.51■□□□□ 0.55
COL7A1-205ENST00000465238 GABBR2O75899 941 aa18.51■□□□□ 0.55
COL7A1-205ENST00000465238 MMEP08473 750 aa18.51■□□□□ 0.55
COL7A1-205ENST00000465238 GBP1P32455 592 aa18.51■□□□□ 0.55
COL7A1-205ENST00000465238 GRIA2P42262 883 aa18.51■□□□□ 0.55
COL7A1-205ENST00000465238 RPL34P49207 117 aaKnown RBP18.51■□□□□ 0.55
COL7A1-205ENST00000465238 PGFP49763 221 aa18.51■□□□□ 0.55
COL7A1-205ENST00000465238 DAOAP59103 153 aa18.51■□□□□ 0.55
COL7A1-205ENST00000465238 CDR2Q01850 454 aa18.51■□□□□ 0.55
COL7A1-205ENST00000465238 GAD2Q05329 585 aa18.51■□□□□ 0.55
COL7A1-205ENST00000465238 PDCLQ13371 301 aa18.51■□□□□ 0.55
COL7A1-205ENST00000465238 LY6G5CQ5SRR4 150 aa18.51■□□□□ 0.55
COL7A1-205ENST00000465238 SFMBT2Q5VUG0 894 aa18.51■□□□□ 0.55
COL7A1-205ENST00000465238 BTBD8Q5XKL5 378 aa18.51■□□□□ 0.55
COL7A1-205ENST00000465238 ANO7Q6IWH7 933 aa18.51■□□□□ 0.55
COL7A1-205ENST00000465238 TMEM110Q86TL2 294 aa18.51■□□□□ 0.55
COL7A1-205ENST00000465238 SCUBE3Q8IX30 993 aa18.51■□□□□ 0.55
COL7A1-205ENST00000465238 CCDC33Q8N5R6 958 aa18.51■□□□□ 0.55
COL7A1-205ENST00000465238 C1orf131Q8NDD1 294 aaKnown RBP18.51■□□□□ 0.55
COL7A1-205ENST00000465238 SLC20A1Q8WUM9 679 aa18.51■□□□□ 0.55
COL7A1-205ENST00000465238 IRGQQ8WZA9 623 aa18.51■□□□□ 0.55
COL7A1-205ENST00000465238 NDRG1Q92597 394 aaKnown RBP18.51■□□□□ 0.55
COL7A1-205ENST00000465238 GOLGA1Q92805 767 aa18.51■□□□□ 0.55
COL7A1-205ENST00000465238 PPP1R13BQ96KQ4 1090 aa18.51■□□□□ 0.55
COL7A1-205ENST00000465238 CDK5RAP1Q96SZ6 601 aaKnown RBP18.51■□□□□ 0.55
COL7A1-205ENST00000465238 TPSD1Q9BZJ3 242 aa18.51■□□□□ 0.55
COL7A1-205ENST00000465238 TTYH3Q9C0H2 523 aa18.51■□□□□ 0.55
COL7A1-205ENST00000465238 SYNCQ9H7C4 482 aa18.51■□□□□ 0.55
COL7A1-205ENST00000465238 ARHGEF4Q9NR80 690 aa18.51■□□□□ 0.55
COL7A1-205ENST00000465238 RXFP3Q9NSD7 469 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms