RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	TPMT	P51580	245 aa		11.72	□□□□□ -0.53
PTPN7-204	ENST00000462815	VAMP7	P51809	220 aa		11.72	□□□□□ -0.53
PTPN7-204	ENST00000462815	ZNF132	P52740	706 aa		11.72	□□□□□ -0.53
PTPN7-204	ENST00000462815	ENPEP	Q07075	957 aa		11.72	□□□□□ -0.53
PTPN7-204	ENST00000462815	GOLGA8F	Q08AF8	430 aa		11.72	□□□□□ -0.53
PTPN7-204	ENST00000462815	GOLGA8DP	Q0D2H9	430 aa		11.72	□□□□□ -0.53
PTPN7-204	ENST00000462815	ZNF234	Q14588	700 aa		11.72	□□□□□ -0.53
PTPN7-204	ENST00000462815	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	11.72	□□□□□ -0.53
PTPN7-204	ENST00000462815	ZCWPW2	Q504Y3	356 aa		11.72	□□□□□ -0.53
PTPN7-204	ENST00000462815	C10orf120	Q5SQS8	335 aa		11.72	□□□□□ -0.53
PTPN7-204	ENST00000462815	SDE2	Q6IQ49	451 aa		11.72	□□□□□ -0.53
PTPN7-204	ENST00000462815	KIAA1324	Q6UXG2	1013 aa	Known RBP	11.72	□□□□□ -0.53
PTPN7-204	ENST00000462815	FOXD4L3	Q6VB84	417 aa	Predicted RBP	11.72	□□□□□ -0.53
PTPN7-204	ENST00000462815	CCNI2	Q6ZMN8	369 aa	Predicted RBP	11.72	□□□□□ -0.53
PTPN7-204	ENST00000462815	SLCO6A1	Q86UG4	719 aa		11.72	□□□□□ -0.53
PTPN7-204	ENST00000462815	CPXM2	Q8N436	756 aa		11.72	□□□□□ -0.53
PTPN7-204	ENST00000462815	CADM4	Q8NFZ8	388 aa		11.72	□□□□□ -0.53
PTPN7-204	ENST00000462815	SEMA4D	Q92854	862 aa		11.72	□□□□□ -0.53
PTPN7-204	ENST00000462815	SNX21	Q969T3	373 aa		11.72	□□□□□ -0.53
PTPN7-204	ENST00000462815	NIF3L1	Q9GZT8	377 aa		11.72	□□□□□ -0.53
PTPN7-204	ENST00000462815	PRDM16	Q9HAZ2	1276 aa		11.72	□□□□□ -0.53
PTPN7-204	ENST00000462815	EXOC1	Q9NV70	894 aa		11.72	□□□□□ -0.53
PTPN7-204	ENST00000462815	FAM13B	Q9NYF5	915 aa		11.72	□□□□□ -0.53
PTPN7-204	ENST00000462815	SUSD2	Q9UGT4	822 aa		11.72	□□□□□ -0.53
PTPN7-204	ENST00000462815	NAGPA	Q9UK23	515 aa		11.72	□□□□□ -0.53
PTPN7-204	ENST00000462815	PCOLCE2	Q9UKZ9	415 aa		11.72	□□□□□ -0.53
PTPN7-204	ENST00000462815	LHX6	Q9UPM6	363 aa		11.72	□□□□□ -0.53
PTPN7-204	ENST00000462815	PTPRB	P23467	1997 aa		11.72	□□□□□ -0.53
PTPN7-204	ENST00000462815	ADAMTS20	P59510	1910 aa		11.71	□□□□□ -0.53
PTPN7-204	ENST00000462815	FAM237A	A0A1B0GTK4	181 aa		11.71	□□□□□ -0.53
PTPN7-204	ENST00000462815		A0A1B0GTW7	788 aa		11.71	□□□□□ -0.53
PTPN7-204	ENST00000462815	METTL12	A8MUP2	240 aa		11.71	□□□□□ -0.53
PTPN7-204	ENST00000462815	NPC1	O15118	1278 aa		11.71	□□□□□ -0.53
PTPN7-204	ENST00000462815	PRR29	P0C7W0	189 aa		11.71	□□□□□ -0.53
PTPN7-204	ENST00000462815	ZNF883	P0CG24	379 aa		11.71	□□□□□ -0.53
PTPN7-204	ENST00000462815	NCAM1	P13591	858 aa		11.71	□□□□□ -0.53
PTPN7-204	ENST00000462815	PDIA4	P13667	645 aa	Known RBP	11.71	□□□□□ -0.53
PTPN7-204	ENST00000462815	PFKFB1	P16118	471 aa		11.71	□□□□□ -0.53
PTPN7-204	ENST00000462815	CD58	P19256	250 aa		11.71	□□□□□ -0.53
PTPN7-204	ENST00000462815	DNM1	Q05193	864 aa	Known RBP	11.71	□□□□□ -0.53
PTPN7-204	ENST00000462815	SCAP	Q12770	1279 aa		11.71	□□□□□ -0.53
PTPN7-204	ENST00000462815	WDR45B	Q5MNZ6	344 aa		11.71	□□□□□ -0.53
PTPN7-204	ENST00000462815	SYCP2L	Q5T4T6	812 aa		11.71	□□□□□ -0.53
PTPN7-204	ENST00000462815	CEP135	Q66GS9	1140 aa		11.71	□□□□□ -0.53
PTPN7-204	ENST00000462815	ZC3H3	Q8IXZ2	948 aa	Known RBP	11.71	□□□□□ -0.53
PTPN7-204	ENST00000462815	CEP57L1	Q8IYX8	460 aa		11.71	□□□□□ -0.53
PTPN7-204	ENST00000462815	RGL4	Q8IZJ4	473 aa		11.71	□□□□□ -0.53
PTPN7-204	ENST00000462815	ZCCHC9	Q8N567	271 aa	Known RBP	11.71	□□□□□ -0.53
PTPN7-204	ENST00000462815	PNPLA1	Q8N8W4	532 aa		11.71	□□□□□ -0.53
PTPN7-204	ENST00000462815	SLC4A11	Q8NBS3	891 aa		11.71	□□□□□ -0.53
PTPN7-204	ENST00000462815	SORCS1	Q8WY21	1168 aa		11.71	□□□□□ -0.53
PTPN7-204	ENST00000462815	GPR174	Q9BXC1	333 aa		11.71	□□□□□ -0.53
PTPN7-204	ENST00000462815	UBXN6	Q9BZV1	441 aa		11.71	□□□□□ -0.53
PTPN7-204	ENST00000462815	ZDHHC5	Q9C0B5	715 aa		11.71	□□□□□ -0.53
PTPN7-204	ENST00000462815	FNDC3A	Q9Y2H6	1198 aa	Known RBP	11.71	□□□□□ -0.53
PTPN7-204	ENST00000462815	ZNF510	Q9Y2H8	683 aa		11.71	□□□□□ -0.53
PTPN7-204	ENST00000462815		A0A1B0GVL5	298 aa		11.7	□□□□□ -0.54
PTPN7-204	ENST00000462815	C10orf142	B7Z368	130 aa		11.7	□□□□□ -0.54
PTPN7-204	ENST00000462815	TULP2	O00295	520 aa		11.7	□□□□□ -0.54
PTPN7-204	ENST00000462815	NDUFS2	O75306	463 aa		11.7	□□□□□ -0.54
PTPN7-204	ENST00000462815	RHOBTB3	O94955	611 aa		11.7	□□□□□ -0.54
PTPN7-204	ENST00000462815	HOXD9	P28356	352 aa	Predicted RBP	11.7	□□□□□ -0.54
PTPN7-204	ENST00000462815	CHKA	P35790	457 aa		11.7	□□□□□ -0.54
PTPN7-204	ENST00000462815	RAD23B	P54727	409 aa		11.7	□□□□□ -0.54
PTPN7-204	ENST00000462815	EFEMP1	Q12805	493 aa		11.7	□□□□□ -0.54
PTPN7-204	ENST00000462815	ACAP1	Q15027	740 aa		11.7	□□□□□ -0.54
PTPN7-204	ENST00000462815	EIF4H	Q15056	248 aa	Known RBP	11.7	□□□□□ -0.54
PTPN7-204	ENST00000462815	TRIP4	Q15650	581 aa	Predicted RBP	11.7	□□□□□ -0.54
PTPN7-204	ENST00000462815	DCAF12L1	Q5VU92	463 aa		11.7	□□□□□ -0.54
PTPN7-204	ENST00000462815	ARHGAP17	Q68EM7	881 aa		11.7	□□□□□ -0.54
PTPN7-204	ENST00000462815	ATL3	Q6DD88	541 aa		11.7	□□□□□ -0.54
PTPN7-204	ENST00000462815	PM20D1	Q6GTS8	502 aa		11.7	□□□□□ -0.54
PTPN7-204	ENST00000462815	INTS8	Q75QN2	995 aa	Known RBP	11.7	□□□□□ -0.54
PTPN7-204	ENST00000462815	ANKS1B	Q7Z6G8	1248 aa		11.7	□□□□□ -0.54
PTPN7-204	ENST00000462815	KIAA0907	Q7Z7F0	614 aa	Predicted RBP	11.7	□□□□□ -0.54
PTPN7-204	ENST00000462815	TADA2B	Q86TJ2	420 aa		11.7	□□□□□ -0.54
PTPN7-204	ENST00000462815	PIGZ	Q86VD9	579 aa		11.7	□□□□□ -0.54
PTPN7-204	ENST00000462815	TMPRSS6	Q8IU80	811 aa		11.7	□□□□□ -0.54
PTPN7-204	ENST00000462815	FAXDC2	Q96IV6	333 aa		11.7	□□□□□ -0.54
PTPN7-204	ENST00000462815	CDK5RAP1	Q96SZ6	601 aa	Known RBP	11.7	□□□□□ -0.54
PTPN7-204	ENST00000462815	ARID3A	Q99856	593 aa		11.7	□□□□□ -0.54
PTPN7-204	ENST00000462815	ORAI3	Q9BRQ5	295 aa		11.7	□□□□□ -0.54
PTPN7-204	ENST00000462815	TMEM245	Q9H330	911 aa		11.7	□□□□□ -0.54
PTPN7-204	ENST00000462815	TMEM8A	Q9HCN3	771 aa		11.7	□□□□□ -0.54
PTPN7-204	ENST00000462815	ELOVL2	Q9NXB9	296 aa		11.7	□□□□□ -0.54
PTPN7-204	ENST00000462815	RASAL2	Q9UJF2	1139 aa		11.7	□□□□□ -0.54
PTPN7-204	ENST00000462815	STOML2	Q9UJZ1	356 aa		11.7	□□□□□ -0.54
PTPN7-204	ENST00000462815	CALU	O43852	315 aa	Predicted RBP	11.69	□□□□□ -0.54
PTPN7-204	ENST00000462815	CLSTN1	O94985	981 aa		11.69	□□□□□ -0.54
PTPN7-204	ENST00000462815	MYL1	P05976	194 aa		11.69	□□□□□ -0.54
PTPN7-204	ENST00000462815	HMBS	P08397	361 aa		11.69	□□□□□ -0.54
PTPN7-204	ENST00000462815	GNS	P15586	552 aa		11.69	□□□□□ -0.54
PTPN7-204	ENST00000462815	CMA1	P23946	247 aa		11.69	□□□□□ -0.54
PTPN7-204	ENST00000462815	NR2F2	P24468	414 aa		11.69	□□□□□ -0.54
PTPN7-204	ENST00000462815	HLA-F	P30511	346 aa		11.69	□□□□□ -0.54
PTPN7-204	ENST00000462815	COG7	P83436	770 aa		11.69	□□□□□ -0.54
PTPN7-204	ENST00000462815	DPYD	Q12882	1025 aa		11.69	□□□□□ -0.54
PTPN7-204	ENST00000462815	CAMK2G	Q13555	558 aa	Predicted RBP	11.69	□□□□□ -0.54
PTPN7-204	ENST00000462815	STARD3	Q14849	445 aa		11.69	□□□□□ -0.54
PTPN7-204	ENST00000462815	PTPRN	Q16849	979 aa		11.69	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms