RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 TKTL1P51854 596 aa16.12■□□□□ 0.17
SKA3-204ENST00000462482 RAD23BP54727 409 aa16.12■□□□□ 0.17
SKA3-204ENST00000462482 SLC14A1Q13336 389 aa16.12■□□□□ 0.17
SKA3-204ENST00000462482 FUT11Q495W5 492 aa16.12■□□□□ 0.17
SKA3-204ENST00000462482 FYB2Q5VWT5 728 aa16.12■□□□□ 0.17
SKA3-204ENST00000462482 PIP4P1Q86T03 277 aa16.12■□□□□ 0.17
SKA3-204ENST00000462482 SLC41A1Q8IVJ1 513 aa16.12■□□□□ 0.17
SKA3-204ENST00000462482 CPXM2Q8N436 756 aa16.12■□□□□ 0.17
SKA3-204ENST00000462482 SLC4A11Q8NBS3 891 aa16.12■□□□□ 0.17
SKA3-204ENST00000462482 PRCCQ92733 491 aaPredicted RBP16.12■□□□□ 0.17
SKA3-204ENST00000462482 SIPA1Q96FS4 1042 aa16.12■□□□□ 0.17
SKA3-204ENST00000462482 IPO9Q96P70 1041 aaKnown RBP16.12■□□□□ 0.17
SKA3-204ENST00000462482 ZDHHC5Q9C0B5 715 aa16.12■□□□□ 0.17
SKA3-204ENST00000462482 SLC6A17Q9H1V8 727 aa16.12■□□□□ 0.17
SKA3-204ENST00000462482 THAP10Q9P2Z0 257 aaPredicted RBP16.12■□□□□ 0.17
SKA3-204ENST00000462482 ZMIZ1Q9ULJ6 1067 aa16.12■□□□□ 0.17
SKA3-204ENST00000462482 NEUROG3Q9Y4Z2 214 aa16.12■□□□□ 0.17
SKA3-204ENST00000462482 GOLGA6L4A6NEF3 574 aa16.11■□□□□ 0.17
SKA3-204ENST00000462482 CD19P15391 556 aa16.11■□□□□ 0.17
SKA3-204ENST00000462482 BCAT1P54687 386 aa16.11■□□□□ 0.17
SKA3-204ENST00000462482 ZNF445P59923 1031 aa16.11■□□□□ 0.17
SKA3-204ENST00000462482 GEN1Q17RS7 908 aa16.11■□□□□ 0.17
SKA3-204ENST00000462482 GOLGA7BQ2TAP0 167 aa16.11■□□□□ 0.17
SKA3-204ENST00000462482 ZCWPW2Q504Y3 356 aa16.11■□□□□ 0.17
SKA3-204ENST00000462482 MPPE1Q53F39 396 aa16.11■□□□□ 0.17
SKA3-204ENST00000462482 SGO2Q562F6 1265 aa16.11■□□□□ 0.17
SKA3-204ENST00000462482 DCAF17Q5H9S7 520 aaPredicted RBP16.11■□□□□ 0.17
SKA3-204ENST00000462482 TMPRSS6Q8IU80 811 aa16.11■□□□□ 0.17
SKA3-204ENST00000462482 SIX6OS1Q8N1H7 587 aa16.11■□□□□ 0.17
SKA3-204ENST00000462482 KDF1Q8NAX2 398 aaPredicted RBP16.11■□□□□ 0.17
SKA3-204ENST00000462482 SEMA4DQ92854 862 aa16.11■□□□□ 0.17
SKA3-204ENST00000462482 TOE1Q96GM8 510 aaKnown RBP16.11■□□□□ 0.17
SKA3-204ENST00000462482 CD248Q9HCU0 757 aa16.11■□□□□ 0.17
SKA3-204ENST00000462482 DNAAF2Q9NVR5 837 aaKnown RBP16.11■□□□□ 0.17
SKA3-204ENST00000462482 ELOVL2Q9NXB9 296 aa16.11■□□□□ 0.17
SKA3-204ENST00000462482 KIAA1549LQ6ZVL6 1849 aa16.1■□□□□ 0.17
SKA3-204ENST00000462482 EML5Q05BV3 1969 aa16.1■□□□□ 0.17
SKA3-204ENST00000462482 A0A1B0GTW7 788 aa16.1■□□□□ 0.17
SKA3-204ENST00000462482 XPO1O14980 1071 aaKnown RBP16.1■□□□□ 0.17
SKA3-204ENST00000462482 SLC16A3O15427 465 aaKnown RBP16.1■□□□□ 0.17
SKA3-204ENST00000462482 HYAL3O43820 417 aaPredicted RBP16.1■□□□□ 0.17
SKA3-204ENST00000462482 NCAM1P13591 858 aa16.1■□□□□ 0.17
SKA3-204ENST00000462482 IL12RB1P42701 662 aa16.1■□□□□ 0.17
SKA3-204ENST00000462482 ZNF423Q2M1K9 1284 aa16.1■□□□□ 0.17
SKA3-204ENST00000462482 RAB41Q5JT25 222 aa16.1■□□□□ 0.17
SKA3-204ENST00000462482 SERPINA13PQ6UXR4 307 aa16.1■□□□□ 0.17
SKA3-204ENST00000462482 CADM4Q8NFZ8 388 aa16.1■□□□□ 0.17
SKA3-204ENST00000462482 EEF2KMTQ96G04 330 aa16.1■□□□□ 0.17
SKA3-204ENST00000462482 GPR174Q9BXC1 333 aa16.1■□□□□ 0.17
SKA3-204ENST00000462482 GTPBP4Q9BZE4 634 aaKnown RBP16.1■□□□□ 0.17
SKA3-204ENST00000462482 ULBP1Q9BZM6 244 aa16.1■□□□□ 0.17
SKA3-204ENST00000462482 MIR1-1HGQ9H1L0 117 aa16.1■□□□□ 0.17
SKA3-204ENST00000462482 ITM2CQ9NQX7 267 aa16.1■□□□□ 0.17
SKA3-204ENST00000462482 WSB2Q9NYS7 404 aaPredicted RBP16.1■□□□□ 0.17
SKA3-204ENST00000462482 WASF3Q9UPY6 502 aa16.1■□□□□ 0.17
SKA3-204ENST00000462482 HBS1LQ9Y450 684 aaKnown RBP16.1■□□□□ 0.17
SKA3-204ENST00000462482 NFE2L3Q9Y4A8 694 aa16.1■□□□□ 0.17
SKA3-204ENST00000462482 SMC2O95347 1197 aa16.09■□□□□ 0.17
SKA3-204ENST00000462482 TOP3BO95985 862 aaKnown RBP16.09■□□□□ 0.17
SKA3-204ENST00000462482 EPHX1P07099 455 aa16.09■□□□□ 0.17
SKA3-204ENST00000462482 FKBP3Q00688 224 aaKnown RBP16.09■□□□□ 0.17
SKA3-204ENST00000462482 BST2Q10589 180 aaKnown RBP16.09■□□□□ 0.17
SKA3-204ENST00000462482 CUL2Q13617 745 aa16.09■□□□□ 0.17
SKA3-204ENST00000462482 ZNF234Q14588 700 aa16.09■□□□□ 0.17
SKA3-204ENST00000462482 PM20D1Q6GTS8 502 aa16.09■□□□□ 0.17
SKA3-204ENST00000462482 FMNL3Q8IVF7 1028 aa16.09■□□□□ 0.17
SKA3-204ENST00000462482 SMYD4Q8IYR2 804 aaPredicted RBP16.09■□□□□ 0.17
SKA3-204ENST00000462482 WFIKKN2Q8TEU8 576 aa16.09■□□□□ 0.17
SKA3-204ENST00000462482 ZCCHC14Q8WYQ9 949 aaKnown RBP16.09■□□□□ 0.17
SKA3-204ENST00000462482 TATDN2Q93075 761 aa16.09■□□□□ 0.17
SKA3-204ENST00000462482 PIWIL1Q96J94 861 aaKnown RBP16.09■□□□□ 0.17
SKA3-204ENST00000462482 ARID3AQ99856 593 aa16.09■□□□□ 0.17
SKA3-204ENST00000462482 NUP58Q9BVL2 599 aa16.09■□□□□ 0.17
SKA3-204ENST00000462482 GOLPH3LQ9H4A5 285 aa16.09■□□□□ 0.17
SKA3-204ENST00000462482 USP36Q9P275 1121 aaKnown RBP16.09■□□□□ 0.17
SKA3-204ENST00000462482 HOOK1Q9UJC3 728 aaKnown RBP16.09■□□□□ 0.17
SKA3-204ENST00000462482 TSPAN16Q9UKR8 245 aa16.09■□□□□ 0.17
SKA3-204ENST00000462482 KIAA1257Q9ULG3 409 aa16.09■□□□□ 0.17
SKA3-204ENST00000462482 PLA2G4CQ9UP65 541 aa16.09■□□□□ 0.17
SKA3-204ENST00000462482 MSRB2Q9Y3D2 182 aa16.09■□□□□ 0.17
SKA3-204ENST00000462482 MAP1BP46821 2468 aaKnown RBP16.09■□□□□ 0.17
SKA3-204ENST00000462482 CEP295Q9C0D2 2601 aa16.08■□□□□ 0.17
SKA3-204ENST00000462482 SETSIPP0DME0 302 aa16.08■□□□□ 0.16
SKA3-204ENST00000462482 TBXAS1P24557 533 aaPredicted RBP16.08■□□□□ 0.16
SKA3-204ENST00000462482 MAOBP27338 520 aa16.08■□□□□ 0.16
SKA3-204ENST00000462482 TPMTP51580 245 aa16.08■□□□□ 0.16
SKA3-204ENST00000462482 MCCD1P59942 119 aaPredicted RBP16.08■□□□□ 0.16
SKA3-204ENST00000462482 PDE4CQ08493 712 aa16.08■□□□□ 0.16
SKA3-204ENST00000462482 TRIP4Q15650 581 aaPredicted RBP16.08■□□□□ 0.16
SKA3-204ENST00000462482 ABCA7Q8IZY2 2146 aa16.08■□□□□ 0.16
SKA3-204ENST00000462482 OR2I1PQ8NGU4 316 aa16.08■□□□□ 0.16
SKA3-204ENST00000462482 GOLGA1Q92805 767 aa16.08■□□□□ 0.16
SKA3-204ENST00000462482 TMA16Q96EY4 203 aaKnown RBP16.08■□□□□ 0.16
SKA3-204ENST00000462482 MKRN2Q9H000 416 aaKnown RBP16.08■□□□□ 0.16
SKA3-204ENST00000462482 ABCC13Q9NSE7 274 aa16.08■□□□□ 0.16
SKA3-204ENST00000462482 ARMCX3Q9UH62 379 aaPredicted RBP16.08■□□□□ 0.16
SKA3-204ENST00000462482 ZDHHC9Q9Y397 364 aa16.08■□□□□ 0.16
SKA3-204ENST00000462482 MYO16Q9Y6X6 1858 aa16.08■□□□□ 0.16
SKA3-204ENST00000462482 THADAQ6YHU6 1953 aa16.07■□□□□ 0.16
SKA3-204ENST00000462482 SH3BP5O60239 455 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms