RNA–Protein interactions for RNA: ENST00000461328.1

VARS-219, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 662 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-219ENST00000461328 SGK1O00141 431 aa16.06■□□□□ 0.16
VARS-219ENST00000461328 FOXN3O00409 490 aaPredicted RBP16.06■□□□□ 0.16
VARS-219ENST00000461328 TRIM24O15164 1050 aa16.06■□□□□ 0.16
VARS-219ENST00000461328 MSI1O43347 362 aaKnown RBP16.06■□□□□ 0.16
VARS-219ENST00000461328 LRP3O75074 770 aa16.06■□□□□ 0.16
VARS-219ENST00000461328 GABBR2O75899 941 aa16.06■□□□□ 0.16
VARS-219ENST00000461328 CHRM1P11229 460 aaPredicted RBP16.06■□□□□ 0.16
VARS-219ENST00000461328 NCAM1P13591 858 aa16.06■□□□□ 0.16
VARS-219ENST00000461328 UCHL3P15374 230 aa16.06■□□□□ 0.16
VARS-219ENST00000461328 CHKAP35790 457 aa16.06■□□□□ 0.16
VARS-219ENST00000461328 HARS2P49590 506 aaKnown RBP16.06■□□□□ 0.16
VARS-219ENST00000461328 COPB1P53618 953 aaKnown RBP16.06■□□□□ 0.16
VARS-219ENST00000461328 BPIFB4P59827 614 aa16.06■□□□□ 0.16
VARS-219ENST00000461328 PDCLQ13371 301 aa16.06■□□□□ 0.16
VARS-219ENST00000461328 TMEM92Q6UXU6 159 aa16.06■□□□□ 0.16
VARS-219ENST00000461328 TRMT11Q7Z4G4 463 aaKnown RBP16.06■□□□□ 0.16
VARS-219ENST00000461328 SLC47A2Q86VL8 602 aa16.06■□□□□ 0.16
VARS-219ENST00000461328 ZNF513Q8N8E2 541 aaPredicted RBP16.06■□□□□ 0.16
VARS-219ENST00000461328 KCNV2Q8TDN2 545 aa16.06■□□□□ 0.16
VARS-219ENST00000461328 TRIM62Q9BVG3 475 aa16.06■□□□□ 0.16
VARS-219ENST00000461328 TPSD1Q9BZJ3 242 aa16.06■□□□□ 0.16
VARS-219ENST00000461328 POLMQ9NP87 494 aaPredicted RBP16.06■□□□□ 0.16
VARS-219ENST00000461328 ZDHHC4Q9NPG8 344 aa16.06■□□□□ 0.16
VARS-219ENST00000461328 AGO1Q9UL18 857 aaKnown RBP16.06■□□□□ 0.16
VARS-219ENST00000461328 HBS1LQ9Y450 684 aaKnown RBP16.06■□□□□ 0.16
VARS-219ENST00000461328 CAPN9O14815 690 aa16.05■□□□□ 0.16
VARS-219ENST00000461328 CYBBP04839 570 aa16.05■□□□□ 0.16
VARS-219ENST00000461328 TGM1P22735 817 aa16.05■□□□□ 0.16
VARS-219ENST00000461328 DGKGP49619 791 aa16.05■□□□□ 0.16
VARS-219ENST00000461328 RSPO4Q2I0M5 234 aaPredicted RBP16.05■□□□□ 0.16
VARS-219ENST00000461328 USP39Q53GS9 565 aaKnown RBP16.05■□□□□ 0.16
VARS-219ENST00000461328 RASSF3Q86WH2 238 aa16.05■□□□□ 0.16
VARS-219ENST00000461328 SCUBE3Q8IX30 993 aa16.05■□□□□ 0.16
VARS-219ENST00000461328 FAM71AQ8IYT1 594 aa16.05■□□□□ 0.16
VARS-219ENST00000461328 C1orf131Q8NDD1 294 aaKnown RBP16.05■□□□□ 0.16
VARS-219ENST00000461328 MDGA1Q8NFP4 955 aa16.05■□□□□ 0.16
VARS-219ENST00000461328 IPO4Q8TEX9 1081 aaKnown RBP16.05■□□□□ 0.16
VARS-219ENST00000461328 STK32AQ8WU08 396 aa16.05■□□□□ 0.16
VARS-219ENST00000461328 LOXL4Q96JB6 756 aa16.05■□□□□ 0.16
VARS-219ENST00000461328 SYNCQ9H7C4 482 aa16.05■□□□□ 0.16
VARS-219ENST00000461328 PLCB1Q9NQ66 1216 aa16.05■□□□□ 0.16
VARS-219ENST00000461328 FAM207AQ9NSI2 230 aaPredicted RBP16.05■□□□□ 0.16
VARS-219ENST00000461328 SEMA4GQ9NTN9 838 aa16.05■□□□□ 0.16
VARS-219ENST00000461328 PLK2Q9NYY3 685 aa16.05■□□□□ 0.16
VARS-219ENST00000461328 BCCIPQ9P287 314 aaKnown RBP eCLIP16.05■□□□□ 0.16
VARS-219ENST00000461328 LGALS16A8MUM7 142 aa16.04■□□□□ 0.16
VARS-219ENST00000461328 PRR5-ARHGAP8B1AHC4 643 aa16.04■□□□□ 0.16
VARS-219ENST00000461328 F8VZ95 297 aa16.04■□□□□ 0.16
VARS-219ENST00000461328 DCLK1O15075 740 aa16.04■□□□□ 0.16
VARS-219ENST00000461328 HNRNPLP14866 589 aaKnown RBP eCLIP16.04■□□□□ 0.16
VARS-219ENST00000461328 PTMSP20962 102 aa16.04■□□□□ 0.16
VARS-219ENST00000461328 GBP1P32455 592 aa16.04■□□□□ 0.16
VARS-219ENST00000461328 CLCN1P35523 988 aa16.04■□□□□ 0.16
VARS-219ENST00000461328 KLK7P49862 253 aa16.04■□□□□ 0.16
VARS-219ENST00000461328 ARHGAP8P85298 464 aa16.04■□□□□ 0.16
VARS-219ENST00000461328 TRIP4Q15650 581 aaPredicted RBP16.04■□□□□ 0.16
VARS-219ENST00000461328 ELF2Q15723 593 aa16.04■□□□□ 0.16
VARS-219ENST00000461328 TAF3Q5VWG9 929 aa16.04■□□□□ 0.16
VARS-219ENST00000461328 SMYD5Q6GMV2 418 aa16.04■□□□□ 0.16
VARS-219ENST00000461328 MSANTD2Q6P1R3 559 aa16.04■□□□□ 0.16
VARS-219ENST00000461328 TOGARAM2Q6ZUX3 1019 aa16.04■□□□□ 0.16
VARS-219ENST00000461328 ZC3H10Q96K80 434 aaKnown RBP16.04■□□□□ 0.16
VARS-219ENST00000461328 PPP1R13BQ96KQ4 1090 aa16.04■□□□□ 0.16
VARS-219ENST00000461328 SPAG5Q96R06 1193 aa16.04■□□□□ 0.16
VARS-219ENST00000461328 SLC4A5Q9BY07 1137 aa16.04■□□□□ 0.16
VARS-219ENST00000461328 LIMA1Q9UHB6 759 aaKnown RBP16.04■□□□□ 0.16
VARS-219ENST00000461328 CYTH4Q9UIA0 394 aa16.04■□□□□ 0.16
VARS-219ENST00000461328 CDV3Q9UKY7 258 aaKnown RBP16.04■□□□□ 0.16
VARS-219ENST00000461328 PCDHGC3Q9UN70 934 aa16.04■□□□□ 0.16
VARS-219ENST00000461328 INVSQ9Y283 1065 aa16.04■□□□□ 0.16
VARS-219ENST00000461328 SPTBN4Q9H254 2564 aa16.04■□□□□ 0.16
VARS-219ENST00000461328 DMXL1Q9Y485 3027 aa16.04■□□□□ 0.16
VARS-219ENST00000461328 TCRBV21S2A2A0A5A6 115 aa16.03■□□□□ 0.16
VARS-219ENST00000461328 SMTNL1A8MU46 457 aa16.03■□□□□ 0.16
VARS-219ENST00000461328 PAPSS1O43252 624 aaPredicted RBP16.03■□□□□ 0.16
VARS-219ENST00000461328 ADAM23O75077 832 aa16.03■□□□□ 0.16
VARS-219ENST00000461328 RHOBTB1O94844 696 aa16.03■□□□□ 0.16
VARS-219ENST00000461328 EPN2O95208 641 aa16.03■□□□□ 0.16
VARS-219ENST00000461328 HOXB2P14652 356 aa16.03■□□□□ 0.16
VARS-219ENST00000461328 CYP11B1P15538 503 aa16.03■□□□□ 0.16
VARS-219ENST00000461328 SDHBP21912 280 aa16.03■□□□□ 0.16
VARS-219ENST00000461328 WASP42768 502 aa16.03■□□□□ 0.16
VARS-219ENST00000461328 TBX4P57082 545 aa16.03■□□□□ 0.16
VARS-219ENST00000461328 SNX16P57768 344 aa16.03■□□□□ 0.16
VARS-219ENST00000461328 POLR2FP61218 127 aaKnown RBP16.03■□□□□ 0.16
VARS-219ENST00000461328 UBXN1Q04323 297 aa16.03■□□□□ 0.16
VARS-219ENST00000461328 PUM1Q14671 1186 aaKnown RBP eCLIP16.03■□□□□ 0.16
VARS-219ENST00000461328 SYCP1Q15431 976 aa16.03■□□□□ 0.16
VARS-219ENST00000461328 CSRP2Q16527 193 aa16.03■□□□□ 0.16
VARS-219ENST00000461328 KLHL40Q2TBA0 621 aa16.03■□□□□ 0.16
VARS-219ENST00000461328 PLK5Q496M5 336 aa16.03■□□□□ 0.16
VARS-219ENST00000461328 FYB2Q5VWT5 728 aa16.03■□□□□ 0.16
VARS-219ENST00000461328 EGFLAMQ63HQ2 1017 aa16.03■□□□□ 0.16
VARS-219ENST00000461328 SDE2Q6IQ49 451 aa16.03■□□□□ 0.16
VARS-219ENST00000461328 DPY19L2P1Q6NXN4 242 aa16.03■□□□□ 0.16
VARS-219ENST00000461328 C11orf74Q86VG3 221 aa16.03■□□□□ 0.16
VARS-219ENST00000461328 PGBD3Q8N328 593 aa16.03■□□□□ 0.16
VARS-219ENST00000461328 CPXM2Q8N436 756 aa16.03■□□□□ 0.16
VARS-219ENST00000461328 SERPINB11Q96P15 392 aa16.03■□□□□ 0.16
VARS-219ENST00000461328 STK33Q9BYT3 514 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 91.5 ms