RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 STRNO43815 780 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 APOEP02649 317 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 PCSK1P29120 753 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 FDFT1P37268 417 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 THPOP40225 353 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 GLRBP48167 497 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 RNASEH2BQ5TBB1 312 aaKnown RBP12□□□□□ -0.49
NPHP4-204ENST00000460696 VSTM1Q6UX27 236 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 C4orf22Q6V702 233 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 ATPAF2Q8N5M1 289 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 FITM2Q8N6M3 262 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 CCDC97Q96F63 343 aaPredicted RBP12□□□□□ -0.49
NPHP4-204ENST00000460696 LGMNQ99538 433 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 SPON2Q9BUD6 331 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 TXNRD2Q9NNW7 524 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 NDE1Q9NXR1 346 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 GOLGA8TH3BQL2 631 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 HNRNPCL1O60812 293 aaKnown RBP11.99□□□□□ -0.49
NPHP4-204ENST00000460696 KRT16P08779 473 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 PAMP19021 973 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 IL1R2P27930 398 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 PRAMEP78395 509 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 RCN1Q15293 331 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 DBN1Q16643 649 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 SLC10A6Q3KNW5 377 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 PMF1Q6P1K2 205 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 ACAD11Q709F0 780 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 RPAINQ86UA6 219 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 PIGZQ86VD9 579 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 SPATA2LQ8IUW3 424 aaPredicted RBP11.99□□□□□ -0.49
NPHP4-204ENST00000460696 NDRG1Q92597 394 aaKnown RBP11.99□□□□□ -0.49
NPHP4-204ENST00000460696 USP6NLQ92738 828 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 TINF2Q9BSI4 451 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 UNKQ9C0B0 810 aaKnown RBP11.99□□□□□ -0.49
NPHP4-204ENST00000460696 NRDE2Q9H7Z3 1164 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 TUBGCP4Q9UGJ1 667 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 DNAJC16Q9Y2G8 782 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 BRWD3Q6RI45 1802 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 ARHGEF37A1IGU5 675 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 FAM155BO75949 473 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 NCALDP61601 193 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 GBE1Q04446 702 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 OTOAQ7RTW8 1153 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 SLC25A41Q8N5S1 370 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 PDCD6IPQ8WUM4 868 aaKnown RBP11.99□□□□□ -0.49
NPHP4-204ENST00000460696 PTPRN2Q92932 1015 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 SYT11Q9BT88 431 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 KATNAL1Q9BW62 490 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 SLC24A3Q9HC58 644 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 WDR70Q9NW82 654 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 PCDHGC3Q9UN70 934 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 PRG3Q9Y2Y8 225 aaPredicted RBP11.99□□□□□ -0.49
NPHP4-204ENST00000460696 PTCH2Q9Y6C5 1203 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 TLL2Q9Y6L7 1015 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 CNTNAP2Q9UHC6 1331 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 FCHO1O14526 889 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 GOT1P17174 413 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 KPNA2P52292 529 aaKnown RBP11.99□□□□□ -0.49
NPHP4-204ENST00000460696 AP2B1P63010 937 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 OCRLQ01968 901 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 GAD2Q05329 585 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 MBTD1Q05BQ5 628 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 SLC20A2Q08357 652 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 KLC3Q6P597 504 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 C4orf50Q6ZRC1 276 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 TRIM67Q6ZTA4 783 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 BBS5Q8N3I7 341 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 SEC14L1Q92503 715 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 PDZD7Q9H5P4 517 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 TMEM39AQ9NV64 488 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 SLC38A7Q9NVC3 462 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 RBPJLQ9UBG7 517 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 STARD13Q9Y3M8 1113 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 C2CD2Q9Y426 696 aa11.99□□□□□ -0.49
NPHP4-204ENST00000460696 CLDN5O00501 218 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 AIM2O14862 343 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 UNC5CO95185 931 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 PTPN4P29074 926 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 CDC25CP30307 473 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 CASP2P42575 452 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 ASPAP45381 313 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 CPT1AP50416 773 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 POLE2P56282 527 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 MAP2K5Q13163 448 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 N4BP2L1Q5TBK1 243 aaPredicted RBP11.98□□□□□ -0.49
NPHP4-204ENST00000460696 STRA8Q7Z7C7 330 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 TLK2Q86UE8 772 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 GAD1Q99259 594 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 MECRQ9BV79 373 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 SP110Q9HB58 689 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 PCDH18Q9HCL0 1135 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 FAM237BA0A1B0GVD1 139 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 POMCP01189 267 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 PIGRP01833 764 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 INHAP05111 366 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 THP07101 528 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 STX1BP61266 288 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 SLC12A1Q13621 1099 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 WSCD1Q658N2 575 aa11.98□□□□□ -0.49
NPHP4-204ENST00000460696 ZNF410Q86VK4 478 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms