RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 DDX56Q9NY93 547 aaKnown RBP12.08□□□□□ -0.48
CPSF3-202ENST00000460593 RBAKQ9NYW8 714 aaPredicted RBP12.08□□□□□ -0.48
CPSF3-202ENST00000460593 CLEC11AQ9Y240 323 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 TESPA1A2RU30 521 aaPredicted RBP12.08□□□□□ -0.48
CPSF3-202ENST00000460593 DENRO43583 198 aaKnown RBP12.08□□□□□ -0.48
CPSF3-202ENST00000460593 AP1G1O43747 822 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 FAM58BPP0C7Q3 252 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 KRT3P12035 628 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 MIPP30301 263 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 ABCD1P33897 745 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 TCF7P36402 384 aaPredicted RBP12.08□□□□□ -0.48
CPSF3-202ENST00000460593 RAP1GAPP47736 663 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 SLC44A4Q53GD3 710 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 TRAPPC3LQ5T215 181 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 LRRC38Q5VT99 294 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 GSDMBQ8TAX9 411 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 DEPDC1BQ8WUY9 529 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 OR52B2Q96RD2 323 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 PEBP4Q96S96 227 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 ST6GALNAC4Q9H4F1 302 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 ARMC7Q9H6L4 198 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 CAAP1Q9H8G2 361 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 CIDEBQ9UHD4 219 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 PSMD13Q9UNM6 376 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 SCAF8Q9UPN6 1271 aaKnown RBP12.08□□□□□ -0.48
CPSF3-202ENST00000460593 TPP1O14773 563 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 STRNO43815 780 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 KLHL2O95198 593 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 TNFAIP8O95379 198 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 EDN1P05305 212 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 THRAP10827 490 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 P4HA1P13674 534 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 OSBPP22059 807 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 EIF4BP23588 611 aaKnown RBP12.08□□□□□ -0.48
CPSF3-202ENST00000460593 MTTPP55157 894 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 PIGHQ14442 188 aaPredicted RBP12.08□□□□□ -0.48
CPSF3-202ENST00000460593 PSMD6Q15008 389 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 CES3Q6UWW8 571 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 USP37Q86T82 979 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 CDAN1Q8IWY9 1227 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 NUP93Q8N1F7 819 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 TRIML2Q8N7C3 387 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 ZBTB8BQ8NAP8 495 aaPredicted RBP12.08□□□□□ -0.48
CPSF3-202ENST00000460593 BHLHE22Q8NFJ8 381 aaPredicted RBP12.08□□□□□ -0.48
CPSF3-202ENST00000460593 JADE3Q92613 823 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 TMEM143Q96AN5 459 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 CCT7Q99832 543 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 TSPYL2Q9H2G4 693 aaPredicted RBP12.08□□□□□ -0.48
CPSF3-202ENST00000460593 ZNF180Q9UJW8 692 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 AGO2Q9UKV8 859 aaKnown RBP12.08□□□□□ -0.48
CPSF3-202ENST00000460593 ITGA11Q9UKX5 1188 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 PSAT1Q9Y617 370 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 EP400Q96L91 3159 aa12.08□□□□□ -0.48
CPSF3-202ENST00000460593 XIRP1Q702N8 1843 aaKnown RBP12.08□□□□□ -0.48
CPSF3-202ENST00000460593 SLC15A5A6NIM6 579 aa12.07□□□□□ -0.48
CPSF3-202ENST00000460593 XPOTO43592 962 aaKnown RBP12.07□□□□□ -0.48
CPSF3-202ENST00000460593 APOEP02649 317 aa12.07□□□□□ -0.48
CPSF3-202ENST00000460593 SERPINB2P05120 415 aa12.07□□□□□ -0.48
CPSF3-202ENST00000460593 ENO3P13929 434 aaPredicted RBP12.07□□□□□ -0.48
CPSF3-202ENST00000460593 CDH6P55285 790 aa12.07□□□□□ -0.48
CPSF3-202ENST00000460593 PSMC1P62191 440 aaKnown RBP12.07□□□□□ -0.48
CPSF3-202ENST00000460593 SULT2A1Q06520 285 aa12.07□□□□□ -0.48
CPSF3-202ENST00000460593 FLOT2Q14254 428 aa12.07□□□□□ -0.48
CPSF3-202ENST00000460593 TBCCQ15814 346 aa12.07□□□□□ -0.48
CPSF3-202ENST00000460593 FNDC8Q8TC99 324 aa12.07□□□□□ -0.48
CPSF3-202ENST00000460593 DIS3LQ8TF46 1054 aaKnown RBP12.07□□□□□ -0.48
CPSF3-202ENST00000460593 TARS2Q9BW92 718 aaKnown RBP12.07□□□□□ -0.48
CPSF3-202ENST00000460593 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.07□□□□□ -0.48
CPSF3-202ENST00000460593 GABBR1Q9UBS5 961 aa12.07□□□□□ -0.48
CPSF3-202ENST00000460593 SH3GLB1Q9Y371 365 aa12.07□□□□□ -0.48
CPSF3-202ENST00000460593 GREB1LQ9C091 1923 aaPredicted RBP12.07□□□□□ -0.48
CPSF3-202ENST00000460593 PLOD2O00469 737 aa12.07□□□□□ -0.48
CPSF3-202ENST00000460593 ENTPD3O75355 529 aa12.07□□□□□ -0.48
CPSF3-202ENST00000460593 KRT38O76015 456 aa12.07□□□□□ -0.48
CPSF3-202ENST00000460593 CALB1P05937 261 aa12.07□□□□□ -0.48
CPSF3-202ENST00000460593 CRHR1P34998 444 aa12.07□□□□□ -0.48
CPSF3-202ENST00000460593 TNFSF9P41273 254 aa12.07□□□□□ -0.48
CPSF3-202ENST00000460593 MYL6P60660 151 aa12.07□□□□□ -0.48
CPSF3-202ENST00000460593 PPP2R5DQ14738 602 aa12.07□□□□□ -0.48
CPSF3-202ENST00000460593 PCLAFQ15004 111 aa12.07□□□□□ -0.48
CPSF3-202ENST00000460593 CASC4Q6P4E1 433 aa12.07□□□□□ -0.48
CPSF3-202ENST00000460593 LPCAT2Q7L5N7 544 aa12.07□□□□□ -0.48
CPSF3-202ENST00000460593 SNX32Q86XE0 403 aa12.07□□□□□ -0.48
CPSF3-202ENST00000460593 ZNF781Q8N8C0 355 aa12.07□□□□□ -0.48
CPSF3-202ENST00000460593 MASTLQ96GX5 879 aa12.07□□□□□ -0.48
CPSF3-202ENST00000460593 TAAR1Q96RJ0 339 aa12.07□□□□□ -0.48
CPSF3-202ENST00000460593 MAGEB5Q9BZ81 275 aa12.07□□□□□ -0.48
CPSF3-202ENST00000460593 CCPG1Q9ULG6 757 aa12.07□□□□□ -0.48
CPSF3-202ENST00000460593 MRPL11Q9Y3B7 192 aaKnown RBP12.07□□□□□ -0.48
CPSF3-202ENST00000460593 APOC4-APOC2K7ER74 178 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 ZC3H11AO75152 810 aaKnown RBP eCLIP12.06□□□□□ -0.48
CPSF3-202ENST00000460593 APOC2P02655 101 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 ALDOAP04075 364 aaKnown RBP12.06□□□□□ -0.48
CPSF3-202ENST00000460593 OATP04181 439 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 DPP6P42658 865 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 SH3BGRP55822 239 aaPredicted RBP12.06□□□□□ -0.48
CPSF3-202ENST00000460593 XIAPP98170 497 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 SFSWAPQ12872 951 aaKnown RBP12.06□□□□□ -0.48
CPSF3-202ENST00000460593 KLF10Q13118 480 aa12.06□□□□□ -0.48
CPSF3-202ENST00000460593 APOFQ13790 326 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms