RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 FYB2Q5VWT5 728 aa15.59■□□□□ 0.09
LDLR-202ENST00000455727 TWF2Q6IBS0 349 aaKnown RBP15.59■□□□□ 0.09
LDLR-202ENST00000455727 PAQR9Q6ZVX9 377 aa15.59■□□□□ 0.09
LDLR-202ENST00000455727 FAM228AQ86W67 206 aa15.59■□□□□ 0.09
LDLR-202ENST00000455727 HTR3CQ8WXA8 447 aa15.59■□□□□ 0.09
LDLR-202ENST00000455727 LRRC37BQ96QE4 947 aa15.59■□□□□ 0.09
LDLR-202ENST00000455727 MANSC1Q9H8J5 431 aa15.59■□□□□ 0.09
LDLR-202ENST00000455727 SLC38A7Q9NVC3 462 aa15.59■□□□□ 0.09
LDLR-202ENST00000455727 MLNP12872 115 aa15.58■□□□□ 0.08
LDLR-202ENST00000455727 PURAQ00577 322 aaKnown RBP15.58■□□□□ 0.08
LDLR-202ENST00000455727 GPR162Q16538 588 aa15.58■□□□□ 0.08
LDLR-202ENST00000455727 CCL14Q16627 93 aa15.58■□□□□ 0.08
LDLR-202ENST00000455727 FSCN1Q16658 493 aaKnown RBP15.58■□□□□ 0.08
LDLR-202ENST00000455727 UNC5AQ6ZN44 842 aa15.58■□□□□ 0.08
LDLR-202ENST00000455727 FAM131BQ86XD5 332 aa15.58■□□□□ 0.08
LDLR-202ENST00000455727 PPM1NQ8N819 430 aa15.58■□□□□ 0.08
LDLR-202ENST00000455727 GSDMBQ8TAX9 411 aa15.58■□□□□ 0.08
LDLR-202ENST00000455727 FAM149B1Q96BN6 582 aa15.58■□□□□ 0.08
LDLR-202ENST00000455727 MTBPQ96DY7 904 aa15.58■□□□□ 0.08
LDLR-202ENST00000455727 SLC2A13Q96QE2 648 aa15.58■□□□□ 0.08
LDLR-202ENST00000455727 KLF6Q99612 283 aaPredicted RBP15.58■□□□□ 0.08
LDLR-202ENST00000455727 LRRC4Q9HBW1 653 aa15.58■□□□□ 0.08
LDLR-202ENST00000455727 TXLNGQ9NUQ3 528 aa15.58■□□□□ 0.08
LDLR-202ENST00000455727 STAP1Q9ULZ2 295 aa15.58■□□□□ 0.08
LDLR-202ENST00000455727 CHKBQ9Y259 395 aa15.58■□□□□ 0.08
LDLR-202ENST00000455727 TRPM7Q96QT4 1865 aa15.58■□□□□ 0.08
LDLR-202ENST00000455727 A0A0A0MRY4 1105 aa15.57■□□□□ 0.08
LDLR-202ENST00000455727 C2CD2LO14523 706 aa15.57■□□□□ 0.08
LDLR-202ENST00000455727 IL1BP01584 269 aa15.57■□□□□ 0.08
LDLR-202ENST00000455727 PYGBP11216 843 aa15.57■□□□□ 0.08
LDLR-202ENST00000455727 RGS2P41220 211 aa15.57■□□□□ 0.08
LDLR-202ENST00000455727 DCAF6Q58WW2 860 aa15.57■□□□□ 0.08
LDLR-202ENST00000455727 OTUD1Q5VV17 481 aaPredicted RBP15.57■□□□□ 0.08
LDLR-202ENST00000455727 PYROXD2Q8N2H3 581 aa15.57■□□□□ 0.08
LDLR-202ENST00000455727 SPATA13Q96N96 652 aa15.57■□□□□ 0.08
LDLR-202ENST00000455727 SLC9A7Q96T83 725 aa15.57■□□□□ 0.08
LDLR-202ENST00000455727 ARHGEF4Q9NR80 690 aa15.57■□□□□ 0.08
LDLR-202ENST00000455727 MKS1Q9NXB0 559 aa15.57■□□□□ 0.08
LDLR-202ENST00000455727 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.57■□□□□ 0.08
LDLR-202ENST00000455727 FAM159BA6NKW6 160 aa15.57■□□□□ 0.08
LDLR-202ENST00000455727 H3BRJ5 948 aa15.57■□□□□ 0.08
LDLR-202ENST00000455727 IGF2BP3O00425 579 aaKnown RBP eCLIP15.57■□□□□ 0.08
LDLR-202ENST00000455727 KPNA6O60684 536 aa15.57■□□□□ 0.08
LDLR-202ENST00000455727 ZNF189O75820 626 aaPredicted RBP15.57■□□□□ 0.08
LDLR-202ENST00000455727 TROVE2P10155 538 aaKnown RBP eCLIP15.57■□□□□ 0.08
LDLR-202ENST00000455727 AIF1P55008 147 aa15.57■□□□□ 0.08
LDLR-202ENST00000455727 KCNJ2P63252 427 aa15.57■□□□□ 0.08
LDLR-202ENST00000455727 ANKRD20A2Q5SQ80 823 aa15.57■□□□□ 0.08
LDLR-202ENST00000455727 ANKRD20A1Q5TYW2 823 aa15.57■□□□□ 0.08
LDLR-202ENST00000455727 ANKRD20A3Q5VUR7 823 aa15.57■□□□□ 0.08
LDLR-202ENST00000455727 WSCD1Q658N2 575 aa15.57■□□□□ 0.08
LDLR-202ENST00000455727 CLEC20AQ6ZU45 233 aa15.57■□□□□ 0.08
LDLR-202ENST00000455727 CTAGE3PQ8IX95 158 aa15.57■□□□□ 0.08
LDLR-202ENST00000455727 LRRN4Q8WUT4 740 aa15.57■□□□□ 0.08
LDLR-202ENST00000455727 MYLK2Q9H1R3 596 aa15.57■□□□□ 0.08
LDLR-202ENST00000455727 TSPYL2Q9H2G4 693 aaPredicted RBP15.57■□□□□ 0.08
LDLR-202ENST00000455727 EIF2B3Q9NR50 452 aaKnown RBP15.57■□□□□ 0.08
LDLR-202ENST00000455727 PCDHA11Q9Y5I1 949 aa15.57■□□□□ 0.08
LDLR-202ENST00000455727 CXorf49A8MYA2 514 aaPredicted RBP15.56■□□□□ 0.08
LDLR-202ENST00000455727 TRIM49D1C9J1S8 452 aa15.56■□□□□ 0.08
LDLR-202ENST00000455727 KRT38O76015 456 aa15.56■□□□□ 0.08
LDLR-202ENST00000455727 BEST1O76090 585 aa15.56■□□□□ 0.08
LDLR-202ENST00000455727 FBXO21O94952 628 aa15.56■□□□□ 0.08
LDLR-202ENST00000455727 TGDSO95455 350 aa15.56■□□□□ 0.08
LDLR-202ENST00000455727 ATP6V1G2O95670 118 aa15.56■□□□□ 0.08
LDLR-202ENST00000455727 GLUD2P49448 558 aa15.56■□□□□ 0.08
LDLR-202ENST00000455727 GTF2A1P52655 376 aaPredicted RBP15.56■□□□□ 0.08
LDLR-202ENST00000455727 PRKD1Q15139 912 aaPredicted RBP15.56■□□□□ 0.08
LDLR-202ENST00000455727 TMEM86AQ8N2M4 240 aa15.56■□□□□ 0.08
LDLR-202ENST00000455727 RNF139Q8WU17 664 aa15.56■□□□□ 0.08
LDLR-202ENST00000455727 WNT8BQ93098 351 aa15.56■□□□□ 0.08
LDLR-202ENST00000455727 FERMT1Q9BQL6 677 aa15.56■□□□□ 0.08
LDLR-202ENST00000455727 ZNF638Q14966 1978 aaKnown RBP15.56■□□□□ 0.08
LDLR-202ENST00000455727 CLDN5O00501 218 aa15.56■□□□□ 0.08
LDLR-202ENST00000455727 KLF11O14901 512 aa15.56■□□□□ 0.08
LDLR-202ENST00000455727 OPHN1O60890 802 aa15.56■□□□□ 0.08
LDLR-202ENST00000455727 STK10O94804 968 aaKnown RBP15.56■□□□□ 0.08
LDLR-202ENST00000455727 FAM200BP0CF97 657 aa15.56■□□□□ 0.08
LDLR-202ENST00000455727 VAV1P15498 845 aa15.56■□□□□ 0.08
LDLR-202ENST00000455727 CCNFP41002 786 aa15.56■□□□□ 0.08
LDLR-202ENST00000455727 LHX1P48742 406 aa15.56■□□□□ 0.08
LDLR-202ENST00000455727 MRPS6P82932 125 aaKnown RBP15.56■□□□□ 0.08
LDLR-202ENST00000455727 PAFAH1B3Q15102 231 aaKnown RBP15.56■□□□□ 0.08
LDLR-202ENST00000455727 PDK1Q15118 436 aa15.56■□□□□ 0.08
LDLR-202ENST00000455727 FAM182AQ5T1J6 154 aa15.56■□□□□ 0.08
LDLR-202ENST00000455727 C17orf99Q6UX52 265 aa15.56■□□□□ 0.08
LDLR-202ENST00000455727 SIX6OS1Q8N1H7 587 aa15.56■□□□□ 0.08
LDLR-202ENST00000455727 NDRG1Q92597 394 aaKnown RBP15.56■□□□□ 0.08
LDLR-202ENST00000455727 ERP27Q96DN0 273 aa15.56■□□□□ 0.08
LDLR-202ENST00000455727 ZFP42Q96MM3 310 aa15.56■□□□□ 0.08
LDLR-202ENST00000455727 APBA2Q99767 749 aa15.56■□□□□ 0.08
LDLR-202ENST00000455727 CHST12Q9NRB3 414 aa15.56■□□□□ 0.08
LDLR-202ENST00000455727 SMYD2Q9NRG4 433 aa15.56■□□□□ 0.08
LDLR-202ENST00000455727 MOCS1Q9NZB8 636 aa15.56■□□□□ 0.08
LDLR-202ENST00000455727 MYO18AQ92614 2054 aaKnown RBP15.55■□□□□ 0.08
LDLR-202ENST00000455727 WDR91A4D1P6 747 aa15.55■□□□□ 0.08
LDLR-202ENST00000455727 MANSC4A6NHS7 340 aaPredicted RBP15.55■□□□□ 0.08
LDLR-202ENST00000455727 COPEO14579 308 aa15.55■□□□□ 0.08
LDLR-202ENST00000455727 CYP2B6P20813 491 aa15.55■□□□□ 0.08
LDLR-202ENST00000455727 ACAT1P24752 427 aaKnown RBP15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms