RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 XPO7Q9UIA9 1087 aaKnown RBP11.44□□□□□ -0.58
SCN9A-205ENST00000454569 USP18Q9UMW8 372 aa11.44□□□□□ -0.58
SCN9A-205ENST00000454569 SNX12Q9UMY4 172 aa11.44□□□□□ -0.58
SCN9A-205ENST00000454569 A0A1W2PRU2 124 aa11.43□□□□□ -0.58
SCN9A-205ENST00000454569 CTAGE9A4FU28 777 aa11.43□□□□□ -0.58
SCN9A-205ENST00000454569 PDE2AO00408 941 aaPredicted RBP11.43□□□□□ -0.58
SCN9A-205ENST00000454569 KCNK3O14649 394 aa11.43□□□□□ -0.58
SCN9A-205ENST00000454569 COCHO43405 550 aa11.43□□□□□ -0.58
SCN9A-205ENST00000454569 TLR5O60602 858 aa11.43□□□□□ -0.58
SCN9A-205ENST00000454569 C1RP00736 705 aa11.43□□□□□ -0.58
SCN9A-205ENST00000454569 HMBSP08397 361 aa11.43□□□□□ -0.58
SCN9A-205ENST00000454569 GGCXP38435 758 aa11.43□□□□□ -0.58
SCN9A-205ENST00000454569 DEUP1Q05D60 604 aa11.43□□□□□ -0.58
SCN9A-205ENST00000454569 ADCY2Q08462 1091 aa11.43□□□□□ -0.58
SCN9A-205ENST00000454569 C10orf120Q5SQS8 335 aa11.43□□□□□ -0.58
SCN9A-205ENST00000454569 ARTNQ5T4W7 220 aa11.43□□□□□ -0.58
SCN9A-205ENST00000454569 MSANTD2Q6P1R3 559 aa11.43□□□□□ -0.58
SCN9A-205ENST00000454569 SYCE2Q6PIF2 218 aa11.43□□□□□ -0.58
SCN9A-205ENST00000454569 Q7L0L9 218 aa11.43□□□□□ -0.58
SCN9A-205ENST00000454569 BEND5Q7L4P6 421 aa11.43□□□□□ -0.58
SCN9A-205ENST00000454569 STRADAQ7RTN6 431 aa11.43□□□□□ -0.58
SCN9A-205ENST00000454569 MIB1Q86YT6 1006 aa11.43□□□□□ -0.58
SCN9A-205ENST00000454569 ZDHHC14Q8IZN3 488 aa11.43□□□□□ -0.58
SCN9A-205ENST00000454569 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.43□□□□□ -0.58
SCN9A-205ENST00000454569 SHKBP1Q8TBC3 707 aa11.43□□□□□ -0.58
SCN9A-205ENST00000454569 PGAP3Q96FM1 320 aaPredicted RBP11.43□□□□□ -0.58
SCN9A-205ENST00000454569 OSBPL9Q96SU4 736 aa11.43□□□□□ -0.58
SCN9A-205ENST00000454569 SNRNP25Q9BV90 132 aaKnown RBP11.43□□□□□ -0.58
SCN9A-205ENST00000454569 PRKD2Q9BZL6 878 aa11.43□□□□□ -0.58
SCN9A-205ENST00000454569 SMOC2Q9H3U7 446 aa11.43□□□□□ -0.58
SCN9A-205ENST00000454569 GKN1Q9NS71 199 aa11.43□□□□□ -0.58
SCN9A-205ENST00000454569 MTMR10Q9NXD2 777 aa11.43□□□□□ -0.58
SCN9A-205ENST00000454569 CLIC5Q9NZA1 410 aa11.43□□□□□ -0.58
SCN9A-205ENST00000454569 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.43□□□□□ -0.58
SCN9A-205ENST00000454569 TRPM5Q9NZQ8 1165 aa11.43□□□□□ -0.58
SCN9A-205ENST00000454569 CLEC1BQ9P126 229 aa11.43□□□□□ -0.58
SCN9A-205ENST00000454569 ASB3Q9Y575 518 aa11.43□□□□□ -0.58
SCN9A-205ENST00000454569 TCRBV7S2A1N4TA0A589 114 aa11.42□□□□□ -0.58
SCN9A-205ENST00000454569 C3orf70A6NLC5 250 aaPredicted RBP11.42□□□□□ -0.58
SCN9A-205ENST00000454569 C3orf80F5H4A9 247 aa11.42□□□□□ -0.58
SCN9A-205ENST00000454569 FAM72CH0Y354 149 aa11.42□□□□□ -0.58
SCN9A-205ENST00000454569 IRAK2O43187 625 aa11.42□□□□□ -0.58
SCN9A-205ENST00000454569 RNF8O76064 485 aa11.42□□□□□ -0.58
SCN9A-205ENST00000454569 URI1O94763 535 aaPredicted RBP11.42□□□□□ -0.58
SCN9A-205ENST00000454569 OAS1P00973 400 aaKnown RBP11.42□□□□□ -0.58
SCN9A-205ENST00000454569 RHOP08100 348 aa11.42□□□□□ -0.58
SCN9A-205ENST00000454569 PTPN2P17706 415 aa11.42□□□□□ -0.58
SCN9A-205ENST00000454569 PCK1P35558 622 aa11.42□□□□□ -0.58
SCN9A-205ENST00000454569 CXCR3P49682 368 aa11.42□□□□□ -0.58
SCN9A-205ENST00000454569 ARSEP51690 589 aa11.42□□□□□ -0.58
SCN9A-205ENST00000454569 KCNQ1P51787 676 aa11.42□□□□□ -0.58
SCN9A-205ENST00000454569 EPHA5P54756 1037 aa11.42□□□□□ -0.58
SCN9A-205ENST00000454569 ADAM15Q13444 863 aa11.42□□□□□ -0.58
SCN9A-205ENST00000454569 ACAP1Q15027 740 aa11.42□□□□□ -0.58
SCN9A-205ENST00000454569 KCTD19Q17RG1 926 aaPredicted RBP11.42□□□□□ -0.58
SCN9A-205ENST00000454569 PRSS36Q5K4E3 855 aa11.42□□□□□ -0.58
SCN9A-205ENST00000454569 RARS2Q5T160 578 aaKnown RBP11.42□□□□□ -0.58
SCN9A-205ENST00000454569 FAM72AQ5TYM5 149 aa11.42□□□□□ -0.58
SCN9A-205ENST00000454569 FAM72DQ6L9T8 149 aa11.42□□□□□ -0.58
SCN9A-205ENST00000454569 RSRC2Q7L4I2 434 aaKnown RBP11.42□□□□□ -0.58
SCN9A-205ENST00000454569 ITIH5Q86UX2 942 aa11.42□□□□□ -0.58
SCN9A-205ENST00000454569 FAM72BQ86X60 149 aa11.42□□□□□ -0.58
SCN9A-205ENST00000454569 RHOT1Q8IXI2 618 aa11.42□□□□□ -0.58
SCN9A-205ENST00000454569 ARL14EPQ8N8R7 260 aaPredicted RBP11.42□□□□□ -0.58
SCN9A-205ENST00000454569 ADAMTS19Q8TE59 1207 aa11.42□□□□□ -0.58
SCN9A-205ENST00000454569 NUP210Q8TEM1 1887 aaPredicted RBP11.42□□□□□ -0.58
SCN9A-205ENST00000454569 RNF139Q8WU17 664 aa11.42□□□□□ -0.58
SCN9A-205ENST00000454569 HDAC7Q8WUI4 952 aa11.42□□□□□ -0.58
SCN9A-205ENST00000454569 OVCA2Q8WZ82 227 aa11.42□□□□□ -0.58
SCN9A-205ENST00000454569 GOLGA1Q92805 767 aa11.42□□□□□ -0.58
SCN9A-205ENST00000454569 SLC39A13Q96H72 371 aa11.42□□□□□ -0.58
SCN9A-205ENST00000454569 ZFRQ96KR1 1074 aaKnown RBP11.42□□□□□ -0.58
SCN9A-205ENST00000454569 CAPZA3Q96KX2 299 aa11.42□□□□□ -0.58
SCN9A-205ENST00000454569 CALR3Q96L12 384 aaKnown RBP11.42□□□□□ -0.58
SCN9A-205ENST00000454569 FCRL2Q96LA5 508 aaPredicted RBP11.42□□□□□ -0.58
SCN9A-205ENST00000454569 SLC46A2Q9BY10 475 aa11.42□□□□□ -0.58
SCN9A-205ENST00000454569 SMG9Q9H0W8 520 aaKnown RBP11.42□□□□□ -0.58
SCN9A-205ENST00000454569 FAM204AQ9H8W3 233 aa11.42□□□□□ -0.58
SCN9A-205ENST00000454569 RASAL2Q9UJF2 1139 aa11.42□□□□□ -0.58
SCN9A-205ENST00000454569 STAP1Q9ULZ2 295 aa11.42□□□□□ -0.58
SCN9A-205ENST00000454569 SHROOM3Q8TF72 1996 aa11.42□□□□□ -0.58
SCN9A-205ENST00000454569 DENND4AQ7Z401 1863 aa11.42□□□□□ -0.58
SCN9A-205ENST00000454569 SCAMP3O14828 347 aaKnown RBP11.41□□□□□ -0.58
SCN9A-205ENST00000454569 TBX10O75333 385 aa11.41□□□□□ -0.58
SCN9A-205ENST00000454569 HNRNPA1P09651 372 aaKnown RBP eCLIP11.41□□□□□ -0.58
SCN9A-205ENST00000454569 HOXA9P31269 272 aa11.41□□□□□ -0.58
SCN9A-205ENST00000454569 RDXP35241 583 aaKnown RBP11.41□□□□□ -0.58
SCN9A-205ENST00000454569 LTBRP36941 435 aa11.41□□□□□ -0.58
SCN9A-205ENST00000454569 MMRN1Q13201 1228 aa11.41□□□□□ -0.58
SCN9A-205ENST00000454569 PRPF38BQ5VTL8 546 aaKnown RBP11.41□□□□□ -0.58
SCN9A-205ENST00000454569 MFSD7Q6UXD7 560 aa11.41□□□□□ -0.58
SCN9A-205ENST00000454569 CREG2Q8IUH2 290 aa11.41□□□□□ -0.58
SCN9A-205ENST00000454569 ARHGAP18Q8N392 663 aa11.41□□□□□ -0.58
SCN9A-205ENST00000454569 EFHBQ8N7U6 833 aa11.41□□□□□ -0.58
SCN9A-205ENST00000454569 MAB21L3Q8N8X9 362 aa11.41□□□□□ -0.58
SCN9A-205ENST00000454569 LRRN4CLQ8ND94 238 aa11.41□□□□□ -0.58
SCN9A-205ENST00000454569 PDZD8Q8NEN9 1154 aa11.41□□□□□ -0.58
SCN9A-205ENST00000454569 ST13P5Q8NFI4 369 aaPredicted RBP11.41□□□□□ -0.58
SCN9A-205ENST00000454569 RIN3Q8TB24 985 aa11.41□□□□□ -0.58
SCN9A-205ENST00000454569 ITFG1Q8TB96 612 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms