RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 UBXN6Q9BZV1 441 aa18.87■□□□□ 0.61
SQSTM1-204ENST00000453046 SIX2Q9NPC8 291 aa18.87■□□□□ 0.61
SQSTM1-204ENST00000453046 CLIC5Q9NZA1 410 aa18.87■□□□□ 0.61
SQSTM1-204ENST00000453046 WDR35Q9P2L0 1181 aa18.87■□□□□ 0.61
SQSTM1-204ENST00000453046 HESX1Q9UBX0 185 aa18.87■□□□□ 0.61
SQSTM1-204ENST00000453046 APEX2Q9UBZ4 518 aa18.87■□□□□ 0.61
SQSTM1-204ENST00000453046 RASAL2Q9UJF2 1139 aa18.87■□□□□ 0.61
SQSTM1-204ENST00000453046 INVSQ9Y283 1065 aa18.87■□□□□ 0.61
SQSTM1-204ENST00000453046 LUC7L2Q9Y383 392 aaKnown RBP18.87■□□□□ 0.61
SQSTM1-204ENST00000453046 DCLK1O15075 740 aa18.86■□□□□ 0.61
SQSTM1-204ENST00000453046 EPHB6O15197 1021 aa18.86■□□□□ 0.61
SQSTM1-204ENST00000453046 NRDCO43847 1150 aa18.86■□□□□ 0.61
SQSTM1-204ENST00000453046 GREM1O60565 184 aa18.86■□□□□ 0.61
SQSTM1-204ENST00000453046 UCHL3P15374 230 aa18.86■□□□□ 0.61
SQSTM1-204ENST00000453046 SLC9A1P19634 815 aa18.86■□□□□ 0.61
SQSTM1-204ENST00000453046 GOLGA7BQ2TAP0 167 aa18.86■□□□□ 0.61
SQSTM1-204ENST00000453046 C10orf76Q5T2E6 689 aa18.86■□□□□ 0.61
SQSTM1-204ENST00000453046 KLHDC7AQ5VTJ3 777 aa18.86■□□□□ 0.61
SQSTM1-204ENST00000453046 GRAMD4Q6IC98 578 aa18.86■□□□□ 0.61
SQSTM1-204ENST00000453046 RSRC2Q7L4I2 434 aaKnown RBP18.86■□□□□ 0.61
SQSTM1-204ENST00000453046 TRMT11Q7Z4G4 463 aaKnown RBP18.86■□□□□ 0.61
SQSTM1-204ENST00000453046 SCD5Q86SK9 330 aa18.86■□□□□ 0.61
SQSTM1-204ENST00000453046 CCDC112Q8NEF3 446 aa18.86■□□□□ 0.61
SQSTM1-204ENST00000453046 ZNF397Q8NF99 534 aaPredicted RBP18.86■□□□□ 0.61
SQSTM1-204ENST00000453046 PANX2Q96RD6 677 aa18.86■□□□□ 0.61
SQSTM1-204ENST00000453046 NUCKS1Q9H1E3 243 aaKnown RBP18.86■□□□□ 0.61
SQSTM1-204ENST00000453046 DUSP15Q9H1R2 295 aaPredicted RBP18.86■□□□□ 0.61
SQSTM1-204ENST00000453046 ZDHHC4Q9NPG8 344 aa18.86■□□□□ 0.61
SQSTM1-204ENST00000453046 DNAJC17Q9NVM6 304 aaKnown RBP18.86■□□□□ 0.61
SQSTM1-204ENST00000453046 BCCIPQ9P287 314 aaKnown RBP eCLIP18.86■□□□□ 0.61
SQSTM1-204ENST00000453046 TSPAN16Q9UKR8 245 aa18.86■□□□□ 0.61
SQSTM1-204ENST00000453046 MYO6Q9UM54 1294 aa18.86■□□□□ 0.61
SQSTM1-204ENST00000453046 CACNA1AO00555 2505 aa18.86■□□□□ 0.61
SQSTM1-204ENST00000453046 RALGAPA1Q6GYQ0 2036 aa18.86■□□□□ 0.61
SQSTM1-204ENST00000453046 SGK1O00141 431 aa18.85■□□□□ 0.61
SQSTM1-204ENST00000453046 TYRP14679 529 aa18.85■□□□□ 0.61
SQSTM1-204ENST00000453046 KRT9P35527 623 aa18.85■□□□□ 0.61
SQSTM1-204ENST00000453046 KIR2DL1P43626 348 aaPredicted RBP18.85■□□□□ 0.61
SQSTM1-204ENST00000453046 TKTL1P51854 596 aa18.85■□□□□ 0.61
SQSTM1-204ENST00000453046 COG7P83436 770 aa18.85■□□□□ 0.61
SQSTM1-204ENST00000453046 EFEMP1Q12805 493 aa18.85■□□□□ 0.61
SQSTM1-204ENST00000453046 TMEM92Q6UXU6 159 aa18.85■□□□□ 0.61
SQSTM1-204ENST00000453046 C11orf74Q86VG3 221 aa18.85■□□□□ 0.61
SQSTM1-204ENST00000453046 RASSF3Q86WH2 238 aa18.85■□□□□ 0.61
SQSTM1-204ENST00000453046 PHTF2Q8N3S3 785 aa18.85■□□□□ 0.61
SQSTM1-204ENST00000453046 ZNF276Q8N554 614 aa18.85■□□□□ 0.61
SQSTM1-204ENST00000453046 ZNF513Q8N8E2 541 aaPredicted RBP18.85■□□□□ 0.61
SQSTM1-204ENST00000453046 TERB1Q8NA31 727 aa18.85■□□□□ 0.61
SQSTM1-204ENST00000453046 MDGA1Q8NFP4 955 aa18.85■□□□□ 0.61
SQSTM1-204ENST00000453046 BAP1Q92560 729 aa18.85■□□□□ 0.61
SQSTM1-204ENST00000453046 FAM81BQ96LP2 452 aa18.85■□□□□ 0.61
SQSTM1-204ENST00000453046 NT5C1BQ96P26 610 aa18.85■□□□□ 0.61
SQSTM1-204ENST00000453046 DNAJC7Q99615 494 aa18.85■□□□□ 0.61
SQSTM1-204ENST00000453046 LRRC4Q9HBW1 653 aa18.85■□□□□ 0.61
SQSTM1-204ENST00000453046 ABHD10Q9NUJ1 306 aa18.85■□□□□ 0.61
SQSTM1-204ENST00000453046 STRIP2Q9ULQ0 834 aa18.85■□□□□ 0.61
SQSTM1-204ENST00000453046 PCDHGA5Q9Y5G8 931 aa18.85■□□□□ 0.61
SQSTM1-204ENST00000453046 SPAG17Q6Q759 2223 aa18.85■□□□□ 0.61
SQSTM1-204ENST00000453046 MED19A0JLT2 244 aaPredicted RBP18.84■□□□□ 0.61
SQSTM1-204ENST00000453046 DCDC2BA2VCK2 349 aa18.84■□□□□ 0.61
SQSTM1-204ENST00000453046 GDF9O60383 454 aa18.84■□□□□ 0.61
SQSTM1-204ENST00000453046 ZBED1O96006 694 aa18.84■□□□□ 0.61
SQSTM1-204ENST00000453046 HMBSP08397 361 aa18.84■□□□□ 0.61
SQSTM1-204ENST00000453046 ZNF806P0C7X5 589 aa18.84■□□□□ 0.61
SQSTM1-204ENST00000453046 VDRP11473 427 aa18.84■□□□□ 0.61
SQSTM1-204ENST00000453046 FECHP22830 423 aa18.84■□□□□ 0.61
SQSTM1-204ENST00000453046 MPLP40238 635 aa18.84■□□□□ 0.61
SQSTM1-204ENST00000453046 BCAT1P54687 386 aa18.84■□□□□ 0.61
SQSTM1-204ENST00000453046 POLR2FP61218 127 aaKnown RBP18.84■□□□□ 0.61
SQSTM1-204ENST00000453046 YWHAGP61981 247 aaKnown RBP eCLIP18.84■□□□□ 0.61
SQSTM1-204ENST00000453046 PDE4CQ08493 712 aa18.84■□□□□ 0.61
SQSTM1-204ENST00000453046 SF3A2Q15428 464 aaKnown RBP18.84■□□□□ 0.61
SQSTM1-204ENST00000453046 RAB41Q5JT25 222 aa18.84■□□□□ 0.61
SQSTM1-204ENST00000453046 FMNL3Q8IVF7 1028 aa18.84■□□□□ 0.61
SQSTM1-204ENST00000453046 LRRC8AQ8IWT6 810 aa18.84■□□□□ 0.61
SQSTM1-204ENST00000453046 PGBD3Q8N328 593 aa18.84■□□□□ 0.61
SQSTM1-204ENST00000453046 BHMTQ93088 406 aa18.84■□□□□ 0.61
SQSTM1-204ENST00000453046 ZNF510Q9Y2H8 683 aa18.84■□□□□ 0.61
SQSTM1-204ENST00000453046 FHOD1Q9Y613 1164 aa18.84■□□□□ 0.61
SQSTM1-204ENST00000453046 KIAA1549LQ6ZVL6 1849 aa18.84■□□□□ 0.61
SQSTM1-204ENST00000453046 XPO1O14980 1071 aaKnown RBP18.83■□□□□ 0.6
SQSTM1-204ENST00000453046 TRIM24O15164 1050 aa18.83■□□□□ 0.6
SQSTM1-204ENST00000453046 STC2O76061 302 aa18.83■□□□□ 0.6
SQSTM1-204ENST00000453046 ADKP55263 362 aaKnown RBP18.83■□□□□ 0.6
SQSTM1-204ENST00000453046 CREB5Q02930 508 aa18.83■□□□□ 0.6
SQSTM1-204ENST00000453046 BST2Q10589 180 aaKnown RBP18.83■□□□□ 0.6
SQSTM1-204ENST00000453046 TMEM270Q6UE05 265 aa18.83■□□□□ 0.6
SQSTM1-204ENST00000453046 PPM1KQ8N3J5 372 aa18.83■□□□□ 0.6
SQSTM1-204ENST00000453046 OR8K1Q8NGG5 319 aa18.83■□□□□ 0.6
SQSTM1-204ENST00000453046 KCNV2Q8TDN2 545 aa18.83■□□□□ 0.6
SQSTM1-204ENST00000453046 CPLX3Q8WVH0 158 aa18.83■□□□□ 0.6
SQSTM1-204ENST00000453046 HMGB4Q8WW32 186 aa18.83■□□□□ 0.6
SQSTM1-204ENST00000453046 NAA15Q9BXJ9 866 aaKnown RBP18.83■□□□□ 0.6
SQSTM1-204ENST00000453046 ULBP1Q9BZM6 244 aa18.83■□□□□ 0.6
SQSTM1-204ENST00000453046 DCLK3Q9C098 648 aa18.83■□□□□ 0.6
SQSTM1-204ENST00000453046 MARK1Q9P0L2 795 aa18.83■□□□□ 0.6
SQSTM1-204ENST00000453046 KIAA1257Q9ULG3 409 aa18.83■□□□□ 0.6
SQSTM1-204ENST00000453046 PCDHB4Q9Y5E5 795 aa18.83■□□□□ 0.6
SQSTM1-204ENST00000453046 TCRBV21S2A2A0A5A6 115 aa18.82■□□□□ 0.6
SQSTM1-204ENST00000453046 SLC12A8A0AV02 714 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms