RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 APOL3O95236 402 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 STAG3L1P0CL83 205 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 CASP4P49662 377 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 NPEPPSP55786 919 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 POU5F1BQ06416 359 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 MXD4Q14582 209 aaPredicted RBP13.65□□□□□ -0.22
USP40-208ENST00000450966 FIGNQ5HY92 759 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 CYP4V2Q6ZWL3 525 aaPredicted RBP13.65□□□□□ -0.22
USP40-208ENST00000450966 CCNJLQ8IV13 435 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 MMTAG2Q9BU76 263 aaKnown RBP13.65□□□□□ -0.22
USP40-208ENST00000450966 NAALADL1Q9UQQ1 740 aa13.65□□□□□ -0.22
USP40-208ENST00000450966 HOXA2O43364 376 aa13.65□□□□□ -0.23
USP40-208ENST00000450966 FAM20BO75063 409 aa13.65□□□□□ -0.23
USP40-208ENST00000450966 TOP3BO95985 862 aaKnown RBP13.65□□□□□ -0.23
USP40-208ENST00000450966 NPR3P17342 541 aa13.65□□□□□ -0.23
USP40-208ENST00000450966 TBXAS1P24557 533 aaPredicted RBP13.65□□□□□ -0.23
USP40-208ENST00000450966 IL5RAQ01344 420 aa13.65□□□□□ -0.23
USP40-208ENST00000450966 TAF5Q15542 800 aa13.65□□□□□ -0.23
USP40-208ENST00000450966 IMPG1Q17R60 797 aa13.65□□□□□ -0.23
USP40-208ENST00000450966 QRICH1Q2TAL8 776 aa13.65□□□□□ -0.23
USP40-208ENST00000450966 EPHA10Q5JZY3 1008 aa13.65□□□□□ -0.23
USP40-208ENST00000450966 USP50Q70EL3 339 aaPredicted RBP13.65□□□□□ -0.23
USP40-208ENST00000450966 REM2Q8IYK8 340 aaPredicted RBP13.65□□□□□ -0.23
USP40-208ENST00000450966 TMEM35BQ8NCS4 154 aa13.65□□□□□ -0.23
USP40-208ENST00000450966 OR8H1Q8NGG4 311 aa13.65□□□□□ -0.23
USP40-208ENST00000450966 ACMSDQ8TDX5 336 aa13.65□□□□□ -0.23
USP40-208ENST00000450966 SCFD2Q8WU76 684 aa13.65□□□□□ -0.23
USP40-208ENST00000450966 AGPAT1Q99943 283 aa13.65□□□□□ -0.23
USP40-208ENST00000450966 PIGUQ9H490 435 aa13.65□□□□□ -0.23
USP40-208ENST00000450966 NGRNQ9NPE2 291 aaKnown RBP13.65□□□□□ -0.23
USP40-208ENST00000450966 BFARQ9NZS9 450 aa13.65□□□□□ -0.23
USP40-208ENST00000450966 INPP5FQ9Y2H2 1132 aa13.65□□□□□ -0.23
USP40-208ENST00000450966 MTRF1O75570 445 aaKnown RBP13.64□□□□□ -0.23
USP40-208ENST00000450966 ALADP13716 330 aa13.64□□□□□ -0.23
USP40-208ENST00000450966 ADAM33Q9BZ11 813 aa13.64□□□□□ -0.23
USP40-208ENST00000450966 BARHL2Q9NY43 387 aa13.64□□□□□ -0.23
USP40-208ENST00000450966 TBX3O15119 743 aa13.64□□□□□ -0.23
USP40-208ENST00000450966 ZNF24P17028 368 aa13.64□□□□□ -0.23
USP40-208ENST00000450966 FLT1P17948 1338 aa13.64□□□□□ -0.23
USP40-208ENST00000450966 INHBEP58166 350 aa13.64□□□□□ -0.23
USP40-208ENST00000450966 EPC2Q52LR7 807 aa13.64□□□□□ -0.23
USP40-208ENST00000450966 KCNK18Q7Z418 384 aa13.64□□□□□ -0.23
USP40-208ENST00000450966 FRMD5Q7Z6J6 570 aa13.64□□□□□ -0.23
USP40-208ENST00000450966 TPCN2Q8NHX9 752 aa13.64□□□□□ -0.23
USP40-208ENST00000450966 TUBGCP4Q9UGJ1 667 aa13.64□□□□□ -0.23
USP40-208ENST00000450966 AGAP1Q9UPQ3 857 aa13.64□□□□□ -0.23
USP40-208ENST00000450966 TFE3P19532 575 aaPredicted RBP13.64□□□□□ -0.23
USP40-208ENST00000450966 IFI35P80217 286 aaPredicted RBP13.64□□□□□ -0.23
USP40-208ENST00000450966 C1DQ13901 141 aaKnown RBP13.64□□□□□ -0.23
USP40-208ENST00000450966 ZNF568Q3ZCX4 644 aa13.64□□□□□ -0.23
USP40-208ENST00000450966 C6orf10Q5SRN2 563 aa13.64□□□□□ -0.23
USP40-208ENST00000450966 CDC42EP5Q6NZY7 148 aa13.64□□□□□ -0.23
USP40-208ENST00000450966 HTRA1Q92743 480 aa13.64□□□□□ -0.23
USP40-208ENST00000450966 FAM118BQ9BPY3 351 aa13.64□□□□□ -0.23
USP40-208ENST00000450966 FAM32AQ9Y421 112 aaKnown RBP13.64□□□□□ -0.23
USP40-208ENST00000450966 LDLRP01130 860 aa13.64□□□□□ -0.23
USP40-208ENST00000450966 GPC3P51654 580 aa13.64□□□□□ -0.23
USP40-208ENST00000450966 FKBP1AP62942 108 aaKnown RBP13.64□□□□□ -0.23
USP40-208ENST00000450966 SKIV2LQ15477 1246 aaKnown RBP13.64□□□□□ -0.23
USP40-208ENST00000450966 BICRALQ6AI39 1079 aa13.64□□□□□ -0.23
USP40-208ENST00000450966 TTI2Q6NXR4 508 aa13.64□□□□□ -0.23
USP40-208ENST00000450966 C11orf88Q6PI97 169 aa13.64□□□□□ -0.23
USP40-208ENST00000450966 DHFR2Q86XF0 187 aa13.64□□□□□ -0.23
USP40-208ENST00000450966 PCSK9Q8NBP7 692 aaKnown RBP13.64□□□□□ -0.23
USP40-208ENST00000450966 ADCY4Q8NFM4 1077 aa13.64□□□□□ -0.23
USP40-208ENST00000450966 ZNF75CPQ92670 426 aaPredicted RBP13.64□□□□□ -0.23
USP40-208ENST00000450966 GLT1D1Q96MS3 346 aa13.64□□□□□ -0.23
USP40-208ENST00000450966 DGCR6LQ9BY27 220 aa13.64□□□□□ -0.23
USP40-208ENST00000450966 DNAJC16Q9Y2G8 782 aa13.64□□□□□ -0.23
USP40-208ENST00000450966 KATNA1O75449 491 aa13.63□□□□□ -0.23
USP40-208ENST00000450966 HOXD12P35452 270 aa13.63□□□□□ -0.23
USP40-208ENST00000450966 AMPD2Q01433 879 aa13.63□□□□□ -0.23
USP40-208ENST00000450966 TBX2Q13207 712 aaPredicted RBP13.63□□□□□ -0.23
USP40-208ENST00000450966 GALNT18Q6P9A2 607 aa13.63□□□□□ -0.23
USP40-208ENST00000450966 PADI6Q6TGC4 694 aa13.63□□□□□ -0.23
USP40-208ENST00000450966 TRIM72Q6ZMU5 477 aa13.63□□□□□ -0.23
USP40-208ENST00000450966 C8orf59Q8N0T1 100 aaPredicted RBP13.63□□□□□ -0.23
USP40-208ENST00000450966 HDAC7Q8WUI4 952 aa13.63□□□□□ -0.23
USP40-208ENST00000450966 OTUB1Q96FW1 271 aaPredicted RBP13.63□□□□□ -0.23
USP40-208ENST00000450966 JPH1Q9HDC5 661 aaPredicted RBP13.63□□□□□ -0.23
USP40-208ENST00000450966 PCNAP12004 261 aa13.63□□□□□ -0.23
USP40-208ENST00000450966 ANKRD40Q6AI12 368 aa13.63□□□□□ -0.23
USP40-208ENST00000450966 FRMD7Q6ZUT3 714 aa13.63□□□□□ -0.23
USP40-208ENST00000450966 CYP2U1Q7Z449 544 aa13.63□□□□□ -0.23
USP40-208ENST00000450966 SATL1Q86VE3 508 aa13.63□□□□□ -0.23
USP40-208ENST00000450966 HSPH1Q92598 858 aa13.63□□□□□ -0.23
USP40-208ENST00000450966 SGF29Q96ES7 293 aa13.63□□□□□ -0.23
USP40-208ENST00000450966 C17orf80Q9BSJ5 609 aa13.63□□□□□ -0.23
USP40-208ENST00000450966 OSBPL7Q9BZF2 842 aa13.63□□□□□ -0.23
USP40-208ENST00000450966 SLC38A7Q9NVC3 462 aa13.63□□□□□ -0.23
USP40-208ENST00000450966 PLK2Q9NYY3 685 aa13.63□□□□□ -0.23
USP40-208ENST00000450966 XPO7Q9UIA9 1087 aaKnown RBP13.63□□□□□ -0.23
USP40-208ENST00000450966 NKRFO15226 690 aaKnown RBP eCLIP13.63□□□□□ -0.23
USP40-208ENST00000450966 VCLP18206 1134 aa13.63□□□□□ -0.23
USP40-208ENST00000450966 BCAP31P51572 246 aa13.63□□□□□ -0.23
USP40-208ENST00000450966 SLC5A3P53794 718 aa13.63□□□□□ -0.23
USP40-208ENST00000450966 TAP1Q03518 808 aa13.63□□□□□ -0.23
USP40-208ENST00000450966 SCN4BQ8IWT1 228 aa13.63□□□□□ -0.23
USP40-208ENST00000450966 ASNSD1Q9NWL6 643 aa13.63□□□□□ -0.23
USP40-208ENST00000450966 KCND2Q9NZV8 630 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms