RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 BRD8Q9H0E9 1235 aa7.63□□□□□ -1.19
SYNE1-213ENST00000448038 LHX5Q9H2C1 402 aa7.63□□□□□ -1.19
SYNE1-213ENST00000448038 DNMT3LQ9UJW3 386 aa7.63□□□□□ -1.19
SYNE1-213ENST00000448038 TRIM49D1C9J1S8 452 aa7.63□□□□□ -1.19
SYNE1-213ENST00000448038 TTC4O95801 387 aa7.63□□□□□ -1.19
SYNE1-213ENST00000448038 MDH1P40925 334 aaKnown RBP7.63□□□□□ -1.19
SYNE1-213ENST00000448038 RGS4P49798 205 aa7.63□□□□□ -1.19
SYNE1-213ENST00000448038 SESN3P58005 492 aa7.63□□□□□ -1.19
SYNE1-213ENST00000448038 MRPS5P82675 430 aaKnown RBP7.63□□□□□ -1.19
SYNE1-213ENST00000448038 ATP13A4Q4VNC1 1196 aa7.63□□□□□ -1.19
SYNE1-213ENST00000448038 LRRC38Q5VT99 294 aa7.63□□□□□ -1.19
SYNE1-213ENST00000448038 MRNIPQ6NTE8 343 aa7.63□□□□□ -1.19
SYNE1-213ENST00000448038 GBP7Q8N8V2 638 aaPredicted RBP7.63□□□□□ -1.19
SYNE1-213ENST00000448038 FOPNLQ96NB1 174 aa7.63□□□□□ -1.19
SYNE1-213ENST00000448038 DDX23Q9BUQ8 820 aaKnown RBP7.63□□□□□ -1.19
SYNE1-213ENST00000448038 CNGB3Q9NQW8 809 aa7.63□□□□□ -1.19
SYNE1-213ENST00000448038 SPG21Q9NZD8 308 aa7.63□□□□□ -1.19
SYNE1-213ENST00000448038 EPS15L1Q9UBC2 864 aa7.63□□□□□ -1.19
SYNE1-213ENST00000448038 GABRQQ9UN88 632 aa7.63□□□□□ -1.19
SYNE1-213ENST00000448038 TRIM33Q9UPN9 1127 aa7.63□□□□□ -1.19
SYNE1-213ENST00000448038 TJP1Q07157 1748 aa7.63□□□□□ -1.19
SYNE1-213ENST00000448038 TCP11X1B4DZS4 312 aa7.63□□□□□ -1.19
SYNE1-213ENST00000448038 OPHN1O60890 802 aa7.63□□□□□ -1.19
SYNE1-213ENST00000448038 RHOBTB1O94844 696 aa7.63□□□□□ -1.19
SYNE1-213ENST00000448038 HDCP19113 662 aa7.63□□□□□ -1.19
SYNE1-213ENST00000448038 ANKRD20A8PQ5CZ79 823 aa7.63□□□□□ -1.19
SYNE1-213ENST00000448038 GDF6Q6KF10 455 aaPredicted RBP7.63□□□□□ -1.19
SYNE1-213ENST00000448038 LCLAT1Q6UWP7 414 aa7.63□□□□□ -1.19
SYNE1-213ENST00000448038 SGSM3Q96HU1 749 aa7.63□□□□□ -1.19
SYNE1-213ENST00000448038 SERPINB12Q96P63 405 aa7.63□□□□□ -1.19
SYNE1-213ENST00000448038 CORO1BQ9BR76 489 aa7.63□□□□□ -1.19
SYNE1-213ENST00000448038 CDC42EP4Q9H3Q1 356 aaKnown RBP7.63□□□□□ -1.19
SYNE1-213ENST00000448038 CHST7Q9NS84 486 aa7.63□□□□□ -1.19
SYNE1-213ENST00000448038 THG1LQ9NWX6 298 aaKnown RBP7.63□□□□□ -1.19
SYNE1-213ENST00000448038 ANKRD36CQ5JPF3 1778 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 TMEM120BA0PK00 339 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 PRR23AA6NEV1 266 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 RNF103O00237 685 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 CXCL14O95715 111 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 FGBP02675 491 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 SERPINF2P08697 491 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 LAG3P18627 525 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 CYP2C18P33260 490 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 TERF2Q15554 542 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 DDIASQ8IXT1 998 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 HS6ST3Q8IZP7 471 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 GPR152Q8TDT2 470 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 SEZ6LQ9BYH1 1024 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 EML4Q9HC35 981 aaKnown RBP7.62□□□□□ -1.19
SYNE1-213ENST00000448038 TBC1D13Q9NVG8 400 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 ZFP69BQ9UJL9 534 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 ZSCAN5CA6NGD5 496 aaPredicted RBP7.62□□□□□ -1.19
SYNE1-213ENST00000448038 ARVCFO00192 962 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 ZNF197O14709 1029 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 FGFR1P11362 822 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 MAP2K2P36507 400 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 HADHAP40939 763 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 LILRA4P59901 499 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 PURAQ00577 322 aaKnown RBP7.62□□□□□ -1.19
SYNE1-213ENST00000448038 PTPN20Q4JDL3 420 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 DAB2IPQ5VWQ8 1189 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 C16orf59Q7L2K0 433 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 LMNTD2Q8IXW0 634 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 SNX19Q92543 992 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 ADGRE3Q9BY15 652 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 ASAH2Q9NR71 780 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 SAE1Q9UBE0 346 aaPredicted RBP7.62□□□□□ -1.19
SYNE1-213ENST00000448038 GRID1Q9ULK0 1009 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.62□□□□□ -1.19
SYNE1-213ENST00000448038 SHOC2Q9UQ13 582 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 VPS9D1Q9Y2B5 631 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 HACD1B0YJ81 288 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 O00370 1275 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 PPP1R37O75864 691 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 ESRRBO95718 433 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 ERBB2P04626 1255 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 OR4Q2P0C623 313 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 MATKP42679 507 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 DUSP4Q13115 394 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 ZNF618Q5T7W0 954 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 RAP1GAP2Q684P5 730 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 ZNF662Q6ZS27 426 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 ILDR2Q71H61 639 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 LRRC37BQ96QE4 947 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 KCND1Q9NSA2 647 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 TRHDEQ9UKU6 1024 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 ADGRA3Q8IWK6 1321 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 SPECC1L-ADORA2AF8WAN1 911 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 DNALI1O14645 258 aaPredicted RBP7.62□□□□□ -1.19
SYNE1-213ENST00000448038 EOMESO95936 686 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 F2P00734 622 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 IGFBP4P22692 258 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 MMP8P22894 467 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 RBL1P28749 1068 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 GLUD2P49448 558 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 RAD23BP54727 409 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 STX3Q13277 289 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 NPAS4Q8IUM7 802 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 RAB42Q8N4Z0 105 aa7.62□□□□□ -1.19
SYNE1-213ENST00000448038 SPPL2BQ8TCT7 592 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms