RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 PMF1Q6P1K2 205 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 ZNF534Q76KX8 674 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 HACE1Q8IYU2 909 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 LINC01465Q8N7H1 131 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 SLC35F5Q8WV83 523 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 KHSRPQ92945 711 aaKnown RBP eCLIP11.68□□□□□ -0.54
USP4-205ENST00000431357 FDXACB1Q9BRP7 624 aaPredicted RBP11.68□□□□□ -0.54
USP4-205ENST00000431357 MECRQ9BV79 373 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 PCMTD2Q9NV79 361 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 MOCS1Q9NZB8 636 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 DNAJB4Q9UDY4 337 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 GTF2IRD1Q9UHL9 959 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 DERAQ9Y315 318 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 HBS1LQ9Y450 684 aaKnown RBP11.68□□□□□ -0.54
USP4-205ENST00000431357 CSADQ9Y600 493 aa11.68□□□□□ -0.54
USP4-205ENST00000431357 COL1A2P08123 1366 aa11.67□□□□□ -0.54
USP4-205ENST00000431357 MAP3K7O43318 606 aa11.67□□□□□ -0.54
USP4-205ENST00000431357 TM7SF2O76062 418 aa11.67□□□□□ -0.54
USP4-205ENST00000431357 NPTXRO95502 500 aa11.67□□□□□ -0.54
USP4-205ENST00000431357 METTL18O95568 372 aa11.67□□□□□ -0.54
USP4-205ENST00000431357 IMPDH2P12268 514 aa11.67□□□□□ -0.54
USP4-205ENST00000431357 INSRRP14616 1297 aa11.67□□□□□ -0.54
USP4-205ENST00000431357 ARF4P18085 180 aaPredicted RBP11.67□□□□□ -0.54
USP4-205ENST00000431357 L1CAMP32004 1257 aa11.67□□□□□ -0.54
USP4-205ENST00000431357 CD151P48509 253 aa11.67□□□□□ -0.54
USP4-205ENST00000431357 AQP5P55064 265 aa11.67□□□□□ -0.54
USP4-205ENST00000431357 HDAC4P56524 1084 aa11.67□□□□□ -0.54
USP4-205ENST00000431357 THOC5Q13769 683 aaKnown RBP11.67□□□□□ -0.54
USP4-205ENST00000431357 BMPR2Q13873 1038 aa11.67□□□□□ -0.54
USP4-205ENST00000431357 PRKG1Q13976 671 aa11.67□□□□□ -0.54
USP4-205ENST00000431357 PPP6R3Q5H9R7 873 aaPredicted RBP11.67□□□□□ -0.54
USP4-205ENST00000431357 PPP1R26Q5T8A7 1209 aaPredicted RBP11.67□□□□□ -0.54
USP4-205ENST00000431357 MARK2Q7KZI7 788 aaKnown RBP11.67□□□□□ -0.54
USP4-205ENST00000431357 UNC93AQ86WB7 457 aa11.67□□□□□ -0.54
USP4-205ENST00000431357 WDR75Q8IWA0 830 aaKnown RBP11.67□□□□□ -0.54
USP4-205ENST00000431357 SCUBE1Q8IWY4 988 aa11.67□□□□□ -0.54
USP4-205ENST00000431357 WDR60Q8WVS4 1066 aa11.67□□□□□ -0.54
USP4-205ENST00000431357 SCG3Q8WXD2 468 aaKnown RBP11.67□□□□□ -0.54
USP4-205ENST00000431357 CENPIQ92674 756 aaPredicted RBP11.67□□□□□ -0.54
USP4-205ENST00000431357 CDKL2Q92772 493 aa11.67□□□□□ -0.54
USP4-205ENST00000431357 FAM136AQ96C01 138 aa11.67□□□□□ -0.54
USP4-205ENST00000431357 MMP19Q99542 508 aa11.67□□□□□ -0.54
USP4-205ENST00000431357 CCDC106Q9BWC9 280 aa11.67□□□□□ -0.54
USP4-205ENST00000431357 GPRC5DQ9NZD1 345 aa11.67□□□□□ -0.54
USP4-205ENST00000431357 ARMCX1Q9P291 453 aa11.67□□□□□ -0.54
USP4-205ENST00000431357 MORF4L1Q9UBU8 362 aa11.67□□□□□ -0.54
USP4-205ENST00000431357 A0A0G2JLL6 359 aaPredicted RBP11.66□□□□□ -0.54
USP4-205ENST00000431357 C2orf71A6NGG8 1288 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 H3BRJ5 948 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 PAPSS1O43252 624 aaPredicted RBP11.66□□□□□ -0.54
USP4-205ENST00000431357 GLRA3O75311 464 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 TBX10O75333 385 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 CAPN15O75808 1086 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 ALDH1A2O94788 518 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 ENO1P06733 434 aaKnown RBP11.66□□□□□ -0.54
USP4-205ENST00000431357 PGK2P07205 417 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 LINGO3P0C6S8 592 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 GRM5P41594 1212 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 SESN3P58005 492 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 LAMC2Q13753 1193 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 HSF5Q4G112 596 aaPredicted RBP11.66□□□□□ -0.54
USP4-205ENST00000431357 MROH9Q5TGP6 573 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 ARHGAP17Q68EM7 881 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 HEATR6Q6AI08 1181 aaKnown RBP11.66□□□□□ -0.54
USP4-205ENST00000431357 PRRT2Q7Z6L0 340 aaPredicted RBP11.66□□□□□ -0.54
USP4-205ENST00000431357 TRIM74Q86UV6 250 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 TRIM73Q86UV7 250 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 TTC30AQ86WT1 665 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 TREML1Q86YW5 311 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 FBXO16Q8IX29 292 aaPredicted RBP11.66□□□□□ -0.54
USP4-205ENST00000431357 TMEM130Q8N3G9 435 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 C12orf29Q8N999 325 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 PPP1R14CQ8TAE6 165 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 ATP2A3Q93084 1043 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 KIF12Q96FN5 646 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 CPB2Q96IY4 423 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 FAM161BQ96MY7 647 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 RNPEPQ9H4A4 650 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 PLEKHA5Q9HAU0 1116 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 AKT3Q9Y243 479 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 ZSWIM8A7E2V4 1837 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 HMX2A2RU54 273 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 ASB14A6NK59 587 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 UGT1A9O60656 530 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 SKAP2O75563 359 aaPredicted RBP11.66□□□□□ -0.54
USP4-205ENST00000431357 KLHL2O95198 593 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 IGBP1P78318 339 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 TBC1D25Q3MII6 688 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 TRMT10BQ6PF06 316 aaKnown RBP11.66□□□□□ -0.54
USP4-205ENST00000431357 KCNT2Q6UVM3 1135 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 SLC26A9Q7LBE3 791 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 RBM12BQ8IXT5 1001 aaKnown RBP11.66□□□□□ -0.54
USP4-205ENST00000431357 RBM15BQ8NDT2 890 aaKnown RBP11.66□□□□□ -0.54
USP4-205ENST00000431357 NRG4Q8WWG1 115 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 COPS5Q92905 334 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 RILPQ96NA2 401 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 FERMT1Q9BQL6 677 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 NAT9Q9BTE0 207 aa11.66□□□□□ -0.54
USP4-205ENST00000431357 C11orf84Q9BUA3 381 aaPredicted RBP11.66□□□□□ -0.54
USP4-205ENST00000431357 DNAI2Q9GZS0 605 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms