RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 CCL16O15467 120 aa17.78■□□□□ 0.44
CCDC28B-202ENST00000421922 MSI1O43347 362 aaKnown RBP17.78■□□□□ 0.44
CCDC28B-202ENST00000421922 ZMYND10O75800 440 aa17.78■□□□□ 0.44
CCDC28B-202ENST00000421922 ATP5C1P36542 298 aaKnown RBP17.78■□□□□ 0.44
CCDC28B-202ENST00000421922 PGFP49763 221 aa17.78■□□□□ 0.44
CCDC28B-202ENST00000421922 NNTQ13423 1086 aa17.78■□□□□ 0.44
CCDC28B-202ENST00000421922 GPR153Q6NV75 609 aa17.78■□□□□ 0.44
CCDC28B-202ENST00000421922 RBM23Q86U06 439 aaKnown RBP17.78■□□□□ 0.44
CCDC28B-202ENST00000421922 MIB1Q86YT6 1006 aa17.78■□□□□ 0.44
CCDC28B-202ENST00000421922 DEFB123Q8N688 67 aa17.78■□□□□ 0.44
CCDC28B-202ENST00000421922 MRPS31Q92665 395 aaKnown RBP17.78■□□□□ 0.44
CCDC28B-202ENST00000421922 TKTL2Q9H0I9 626 aa17.78■□□□□ 0.44
CCDC28B-202ENST00000421922 CCSER2Q9H7U1 834 aa17.78■□□□□ 0.44
CCDC28B-202ENST00000421922 WDR6Q9NNW5 1121 aaKnown RBP17.78■□□□□ 0.44
CCDC28B-202ENST00000421922 CALCOCO1Q9P1Z2 691 aa17.78■□□□□ 0.44
CCDC28B-202ENST00000421922 DNMT3LQ9UJW3 386 aa17.78■□□□□ 0.44
CCDC28B-202ENST00000421922 TLR6Q9Y2C9 796 aa17.78■□□□□ 0.44
CCDC28B-202ENST00000421922 ATG2AQ2TAZ0 1938 aa17.77■□□□□ 0.44
CCDC28B-202ENST00000421922 SLC12A8A0AV02 714 aa17.77■□□□□ 0.44
CCDC28B-202ENST00000421922 ZNF840PA6NDX5 716 aa17.77■□□□□ 0.44
CCDC28B-202ENST00000421922 PER2O15055 1255 aa17.77■□□□□ 0.44
CCDC28B-202ENST00000421922 TADA3O75528 432 aa17.77■□□□□ 0.44
CCDC28B-202ENST00000421922 FGF19O95750 216 aa17.77■□□□□ 0.44
CCDC28B-202ENST00000421922 IGLV3-25P01717 112 aa17.77■□□□□ 0.44
CCDC28B-202ENST00000421922 HNRNPA1P09651 372 aaKnown RBP eCLIP17.77■□□□□ 0.44
CCDC28B-202ENST00000421922 EPCAMP16422 314 aa17.77■□□□□ 0.44
CCDC28B-202ENST00000421922 CDC25CP30307 473 aa17.77■□□□□ 0.44
CCDC28B-202ENST00000421922 ADRA1BP35368 520 aa17.77■□□□□ 0.44
CCDC28B-202ENST00000421922 CDKN2BP42772 138 aa17.77■□□□□ 0.44
CCDC28B-202ENST00000421922 TUBP50607 506 aa17.77■□□□□ 0.44
CCDC28B-202ENST00000421922 SCAPQ12770 1279 aa17.77■□□□□ 0.44
CCDC28B-202ENST00000421922 DPYSL3Q14195 570 aa17.77■□□□□ 0.44
CCDC28B-202ENST00000421922 PPP2R5DQ14738 602 aa17.77■□□□□ 0.44
CCDC28B-202ENST00000421922 TRIP4Q15650 581 aaPredicted RBP17.77■□□□□ 0.44
CCDC28B-202ENST00000421922 DPYSL2Q16555 572 aa17.77■□□□□ 0.44
CCDC28B-202ENST00000421922 SNX30Q5VWJ9 437 aa17.77■□□□□ 0.44
CCDC28B-202ENST00000421922 CYP4V2Q6ZWL3 525 aaPredicted RBP17.77■□□□□ 0.44
CCDC28B-202ENST00000421922 VSIG1Q86XK7 387 aa17.77■□□□□ 0.44
CCDC28B-202ENST00000421922 EPAS1Q99814 870 aa17.77■□□□□ 0.44
CCDC28B-202ENST00000421922 CORO1BQ9BR76 489 aa17.77■□□□□ 0.44
CCDC28B-202ENST00000421922 ZNF670Q9BS34 389 aa17.77■□□□□ 0.44
CCDC28B-202ENST00000421922 PCDH18Q9HCL0 1135 aa17.77■□□□□ 0.44
CCDC28B-202ENST00000421922 TRPC7Q9HCX4 862 aa17.77■□□□□ 0.44
CCDC28B-202ENST00000421922 HOMER3Q9NSC5 361 aa17.77■□□□□ 0.44
CCDC28B-202ENST00000421922 RBM12Q9NTZ6 932 aaKnown RBP17.77■□□□□ 0.44
CCDC28B-202ENST00000421922 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.77■□□□□ 0.44
CCDC28B-202ENST00000421922 OBSL1O75147 1896 aa17.77■□□□□ 0.43
CCDC28B-202ENST00000421922 MYO7AQ13402 2215 aa17.77■□□□□ 0.43
CCDC28B-202ENST00000421922 DAPK3O43293 454 aa17.76■□□□□ 0.43
CCDC28B-202ENST00000421922 MOCS2O96007 188 aaPredicted RBP17.76■□□□□ 0.43
CCDC28B-202ENST00000421922 MYL4P12829 197 aa17.76■□□□□ 0.43
CCDC28B-202ENST00000421922 KRT10P13645 584 aa17.76■□□□□ 0.43
CCDC28B-202ENST00000421922 GABRR2P28476 465 aa17.76■□□□□ 0.43
CCDC28B-202ENST00000421922 HOXA9P31269 272 aa17.76■□□□□ 0.43
CCDC28B-202ENST00000421922 ZNF135P52742 658 aaPredicted RBP17.76■□□□□ 0.43
CCDC28B-202ENST00000421922 MTA1Q13330 715 aa17.76■□□□□ 0.43
CCDC28B-202ENST00000421922 CA9Q16790 459 aa17.76■□□□□ 0.43
CCDC28B-202ENST00000421922 KLHL7Q8IXQ5 586 aa17.76■□□□□ 0.43
CCDC28B-202ENST00000421922 ZNF276Q8N554 614 aa17.76■□□□□ 0.43
CCDC28B-202ENST00000421922 ATP6V0D2Q8N8Y2 350 aa17.76■□□□□ 0.43
CCDC28B-202ENST00000421922 SLC22A17Q8WUG5 538 aa17.76■□□□□ 0.43
CCDC28B-202ENST00000421922 KCTD15Q96SI1 283 aaPredicted RBP17.76■□□□□ 0.43
CCDC28B-202ENST00000421922 CDCA3Q99618 268 aaPredicted RBP17.76■□□□□ 0.43
CCDC28B-202ENST00000421922 RCOR3Q9P2K3 495 aaPredicted RBP17.76■□□□□ 0.43
CCDC28B-202ENST00000421922 EFR3BQ9Y2G0 817 aa17.76■□□□□ 0.43
CCDC28B-202ENST00000421922 HBS1LQ9Y450 684 aaKnown RBP17.76■□□□□ 0.43
CCDC28B-202ENST00000421922 ANAPC1Q9H1A4 1944 aa17.75■□□□□ 0.43
CCDC28B-202ENST00000421922 ZNF487B1APH4 448 aa17.75■□□□□ 0.43
CCDC28B-202ENST00000421922 EEF2KO00418 725 aaKnown RBP17.75■□□□□ 0.43
CCDC28B-202ENST00000421922 CREB3O43889 395 aa17.75■□□□□ 0.43
CCDC28B-202ENST00000421922 HMBSP08397 361 aa17.75■□□□□ 0.43
CCDC28B-202ENST00000421922 CD48P09326 243 aa17.75■□□□□ 0.43
CCDC28B-202ENST00000421922 SRGAP2BP0DMP2 458 aa17.75■□□□□ 0.43
CCDC28B-202ENST00000421922 L1CAMP32004 1257 aa17.75■□□□□ 0.43
CCDC28B-202ENST00000421922 NRIP1P48552 1158 aa17.75■□□□□ 0.43
CCDC28B-202ENST00000421922 DYNLT1P63172 113 aa17.75■□□□□ 0.43
CCDC28B-202ENST00000421922 NUGGCQ68CJ6 796 aa17.75■□□□□ 0.43
CCDC28B-202ENST00000421922 C8orf74Q6P047 294 aa17.75■□□□□ 0.43
CCDC28B-202ENST00000421922 KLHDC10Q6PID8 442 aa17.75■□□□□ 0.43
CCDC28B-202ENST00000421922 TTC13Q8NBP0 860 aa17.75■□□□□ 0.43
CCDC28B-202ENST00000421922 LEMD2Q8NC56 503 aa17.75■□□□□ 0.43
CCDC28B-202ENST00000421922 LRRN4CLQ8ND94 238 aa17.75■□□□□ 0.43
CCDC28B-202ENST00000421922 MRPL38Q96DV4 380 aaKnown RBP17.75■□□□□ 0.43
CCDC28B-202ENST00000421922 RUNDC3BQ96NL0 473 aa17.75■□□□□ 0.43
CCDC28B-202ENST00000421922 KRT12Q99456 494 aa17.75■□□□□ 0.43
CCDC28B-202ENST00000421922 ATXN3LQ9H3M9 355 aa17.75■□□□□ 0.43
CCDC28B-202ENST00000421922 ZNF334Q9HCZ1 680 aaPredicted RBP17.75■□□□□ 0.43
CCDC28B-202ENST00000421922 ZDHHC7Q9NXF8 308 aa17.75■□□□□ 0.43
CCDC28B-202ENST00000421922 ARHGEF38Q9NXL2 777 aa17.75■□□□□ 0.43
CCDC28B-202ENST00000421922 HCFC2Q9Y5Z7 792 aa17.75■□□□□ 0.43
CCDC28B-202ENST00000421922 C3orf70A6NLC5 250 aaPredicted RBP17.74■□□□□ 0.43
CCDC28B-202ENST00000421922 APOL1O14791 398 aa17.74■□□□□ 0.43
CCDC28B-202ENST00000421922 CST8O60676 142 aa17.74■□□□□ 0.43
CCDC28B-202ENST00000421922 PHF2O75151 1096 aa17.74■□□□□ 0.43
CCDC28B-202ENST00000421922 TBX18O95935 607 aa17.74■□□□□ 0.43
CCDC28B-202ENST00000421922 ZFXP17010 805 aaPredicted RBP17.74■□□□□ 0.43
CCDC28B-202ENST00000421922 PTPN2P17706 415 aa17.74■□□□□ 0.43
CCDC28B-202ENST00000421922 ARSEP51690 589 aa17.74■□□□□ 0.43
CCDC28B-202ENST00000421922 TPI1P60174 286 aa17.74■□□□□ 0.43
CCDC28B-202ENST00000421922 DUSP6Q16828 381 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms