RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 TMEM215Q68D42 235 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 FMNL3Q8IVF7 1028 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 MINDY1Q8N5J2 469 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 DDI1Q8WTU0 396 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 KAT5Q92993 513 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 PIWIL1Q96J94 861 aaKnown RBP12.11□□□□□ -0.47
USP4-204ENST00000416417 CAMK1GQ96NX5 476 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 CIPCQ9C0C6 399 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 MKRN2Q9H000 416 aaKnown RBP12.11□□□□□ -0.47
USP4-204ENST00000416417 CAPN10Q9HC96 672 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 STRIP2Q9ULQ0 834 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 ATP6V1DQ9Y5K8 247 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 USP24Q9UPU5 2620 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 YJEFN3A6XGL0 299 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 E7ENQ6 273 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 HYAL3O43820 417 aaPredicted RBP12.11□□□□□ -0.47
USP4-204ENST00000416417 STX10O60499 249 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 ZNF217O75362 1048 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 GABBR2O75899 941 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 SERPINF2P08697 491 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 HLA-EP13747 358 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 CD44P16070 742 aaKnown RBP12.11□□□□□ -0.47
USP4-204ENST00000416417 CHKAP35790 457 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 SGSHP51688 502 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 ZNF234Q14588 700 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 SGO2Q562F6 1265 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 SPDYCQ5MJ68 293 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 ZNF276Q8N554 614 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 ZNF366Q8N895 744 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 TFAP2BQ92481 460 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 TOE1Q96GM8 510 aaKnown RBP12.11□□□□□ -0.47
USP4-204ENST00000416417 TSG101Q99816 390 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 SCNM1Q9BWG6 230 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 GPR174Q9BXC1 333 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 UBXN6Q9BZV1 441 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 DCLK3Q9C098 648 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 DNAI2Q9GZS0 605 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 PRDM16Q9HAZ2 1276 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 LRRC4Q9HBW1 653 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 THAP10Q9P2Z0 257 aaPredicted RBP12.11□□□□□ -0.47
USP4-204ENST00000416417 ZNF510Q9Y2H8 683 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 SLC27A6Q9Y2P4 619 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 PLXND1Q9Y4D7 1925 aa12.11□□□□□ -0.47
USP4-204ENST00000416417 GOLGA6L7A0A1B0GV03 622 aa12.1□□□□□ -0.47
USP4-204ENST00000416417 RNF225M0QZC1 329 aaPredicted RBP12.1□□□□□ -0.47
USP4-204ENST00000416417 GFRA2O00451 464 aa12.1□□□□□ -0.47
USP4-204ENST00000416417 XPO1O14980 1071 aaKnown RBP12.1□□□□□ -0.47
USP4-204ENST00000416417 SLC16A3O15427 465 aaKnown RBP12.1□□□□□ -0.47
USP4-204ENST00000416417 CYBBP04839 570 aa12.1□□□□□ -0.47
USP4-204ENST00000416417 BCAT1P54687 386 aa12.1□□□□□ -0.47
USP4-204ENST00000416417 SIM1P81133 766 aaPredicted RBP12.1□□□□□ -0.47
USP4-204ENST00000416417 SEMA3BQ13214 749 aa12.1□□□□□ -0.47
USP4-204ENST00000416417 STARD3Q14849 445 aa12.1□□□□□ -0.47
USP4-204ENST00000416417 PLEKHG6Q3KR16 790 aa12.1□□□□□ -0.47
USP4-204ENST00000416417 BSPRYQ5W0U4 402 aa12.1□□□□□ -0.47
USP4-204ENST00000416417 PM20D1Q6GTS8 502 aa12.1□□□□□ -0.47
USP4-204ENST00000416417 UNQ6494/PRO21346Q6UXR6 183 aa12.1□□□□□ -0.47
USP4-204ENST00000416417 ANKS1BQ7Z6G8 1248 aa12.1□□□□□ -0.47
USP4-204ENST00000416417 PIP4P1Q86T03 277 aa12.1□□□□□ -0.47
USP4-204ENST00000416417 FAM124AQ86V42 546 aa12.1□□□□□ -0.47
USP4-204ENST00000416417 ZC3H3Q8IXZ2 948 aaKnown RBP12.1□□□□□ -0.47
USP4-204ENST00000416417 ARHGAP18Q8N392 663 aa12.1□□□□□ -0.47
USP4-204ENST00000416417 UBR7Q8N806 425 aa12.1□□□□□ -0.47
USP4-204ENST00000416417 ENGASEQ8NFI3 743 aa12.1□□□□□ -0.47
USP4-204ENST00000416417 CLEC4CQ8WTT0 213 aa12.1□□□□□ -0.47
USP4-204ENST00000416417 CYB5D2Q8WUJ1 264 aa12.1□□□□□ -0.47
USP4-204ENST00000416417 SMARCE1Q969G3 411 aa12.1□□□□□ -0.47
USP4-204ENST00000416417 SLC35C1Q96A29 364 aa12.1□□□□□ -0.47
USP4-204ENST00000416417 CDK5RAP1Q96SZ6 601 aaKnown RBP12.1□□□□□ -0.47
USP4-204ENST00000416417 ZSWIM1Q9BR11 485 aa12.1□□□□□ -0.47
USP4-204ENST00000416417 MIR1-1HGQ9H1L0 117 aa12.1□□□□□ -0.47
USP4-204ENST00000416417 RMND1Q9NWS8 449 aa12.1□□□□□ -0.47
USP4-204ENST00000416417 ELOVL2Q9NXB9 296 aa12.1□□□□□ -0.47
USP4-204ENST00000416417 HESX1Q9UBX0 185 aa12.1□□□□□ -0.47
USP4-204ENST00000416417 COQ4Q9Y3A0 265 aa12.1□□□□□ -0.47
USP4-204ENST00000416417 AKAP13Q12802 2813 aa12.09□□□□□ -0.47
USP4-204ENST00000416417 O00370 1275 aa12.09□□□□□ -0.47
USP4-204ENST00000416417 ARHGAP33O14559 1287 aa12.09□□□□□ -0.47
USP4-204ENST00000416417 OPHN1O60890 802 aa12.09□□□□□ -0.47
USP4-204ENST00000416417 EPHX1P07099 455 aa12.09□□□□□ -0.47
USP4-204ENST00000416417 PROS1P07225 676 aa12.09□□□□□ -0.47
USP4-204ENST00000416417 CD59P13987 128 aa12.09□□□□□ -0.47
USP4-204ENST00000416417 BRD2P25440 801 aaKnown RBP12.09□□□□□ -0.47
USP4-204ENST00000416417 HOXD9P28356 352 aaPredicted RBP12.09□□□□□ -0.47
USP4-204ENST00000416417 CD6P30203 668 aa12.09□□□□□ -0.47
USP4-204ENST00000416417 COPAP53621 1224 aa12.09□□□□□ -0.47
USP4-204ENST00000416417 SLC8A3P57103 927 aa12.09□□□□□ -0.47
USP4-204ENST00000416417 FKBP3Q00688 224 aaKnown RBP12.09□□□□□ -0.47
USP4-204ENST00000416417 BST2Q10589 180 aaKnown RBP12.09□□□□□ -0.47
USP4-204ENST00000416417 TRIP4Q15650 581 aaPredicted RBP12.09□□□□□ -0.47
USP4-204ENST00000416417 KLHL10Q6JEL2 608 aa12.09□□□□□ -0.47
USP4-204ENST00000416417 RFWD3Q6PCD5 774 aa12.09□□□□□ -0.47
USP4-204ENST00000416417 TMEM270Q6UE05 265 aa12.09□□□□□ -0.47
USP4-204ENST00000416417 TMPRSS6Q8IU80 811 aa12.09□□□□□ -0.47
USP4-204ENST00000416417 HDDC3Q8N4P3 179 aa12.09□□□□□ -0.47
USP4-204ENST00000416417 TTC39CQ8N584 583 aa12.09□□□□□ -0.47
USP4-204ENST00000416417 RBBP8NLQ8NC74 664 aaPredicted RBP12.09□□□□□ -0.47
USP4-204ENST00000416417 CEP76Q8TAP6 659 aa12.09□□□□□ -0.47
USP4-204ENST00000416417 RNF139Q8WU17 664 aa12.09□□□□□ -0.47
USP4-204ENST00000416417 PLD4Q96BZ4 506 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms