RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 ARID3BQ8IVW6 561 aaPredicted RBP17.75■□□□□ 0.43
PHRF1-202ENST00000413872 PAFAH2Q99487 392 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 GPAMQ9HCL2 828 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 SMPD4Q9NXE4 827 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 AIM2O14862 343 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 YBX3P16989 372 aaKnown RBP eCLIP17.75■□□□□ 0.43
PHRF1-202ENST00000413872 KCNA4P22459 653 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 CNTN1Q12860 1018 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 CES5AQ6NT32 575 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 NT5DC3Q86UY8 548 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 PARP9Q8IXQ6 854 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 PHACTR4Q8IZ21 702 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 FAM162AQ96A26 154 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 INPP4AQ96PE3 977 aaPredicted RBP17.75■□□□□ 0.43
PHRF1-202ENST00000413872 HSD17B14Q9BPX1 270 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 NDEL1Q9GZM8 345 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 DDX3XO00571 662 aaKnown RBP eCLIP17.74■□□□□ 0.435e-9■□□□□ 8.7
PHRF1-202ENST00000413872 PJA2O43164 708 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 ZNF7P17097 686 aaPredicted RBP17.74■□□□□ 0.43
PHRF1-202ENST00000413872 NPR3P17342 541 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 SOAT1P35610 550 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 SGCGQ13326 291 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 SEC16BQ96JE7 1060 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 C17orf80Q9BSJ5 609 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 C1QTNF7Q9BXJ2 289 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 UBA2Q9UBT2 640 aaPredicted RBP17.74■□□□□ 0.43
PHRF1-202ENST00000413872 PCDHAC2Q9Y5I4 1007 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 DYRK3O43781 588 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 CSH1P0DML2 217 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 CSH2P0DML3 217 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 ITGB5P18084 799 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 CBWD6Q4V339 395 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 CBWD3Q5JTY5 395 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 CBWD5Q5RIA9 395 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 ETNPPLQ8TBG4 499 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 TUBGCP3Q96CW5 907 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 HES6Q96HZ4 224 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 APOL2Q9BQE5 337 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 CDC42EP4Q9H3Q1 356 aaKnown RBP17.74■□□□□ 0.43
PHRF1-202ENST00000413872 RMND5AQ9H871 391 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 NCKIPSDQ9NZQ3 722 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 E5RJQ4 531 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 PCDH8O95206 1070 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 TRIM16O95361 564 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 GRM5P41594 1212 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 PRAMEF19Q5SWL8 479 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 IFNEQ86WN2 208 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 LRRC52Q8N7C0 313 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 FBXO25Q8TCJ0 367 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 NCKAP1Q9Y2A7 1128 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 C16orf96A6NNT2 1141 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 TPBGLP0DKB5 382 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 WEE1P30291 646 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 CD151P48509 253 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 GRIK3Q13003 919 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 FIBCD1Q8N539 461 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 CELF6Q96J87 481 aaKnown RBP17.74■□□□□ 0.43
PHRF1-202ENST00000413872 NR1H4Q96RI1 486 aaPredicted RBP17.74■□□□□ 0.43
PHRF1-202ENST00000413872 PTCH2Q9Y6C5 1203 aa17.74■□□□□ 0.43
PHRF1-202ENST00000413872 ROBO3Q96MS0 1386 aa17.73■□□□□ 0.43
PHRF1-202ENST00000413872 SMIM35A0A1B0GVV1 85 aa17.73■□□□□ 0.43
PHRF1-202ENST00000413872 APOC4-APOC2K7ER74 178 aa17.73■□□□□ 0.43
PHRF1-202ENST00000413872 APOC2P02655 101 aa17.73■□□□□ 0.43
PHRF1-202ENST00000413872 MPOP05164 745 aa17.73■□□□□ 0.43
PHRF1-202ENST00000413872 MSH3P20585 1137 aa17.73■□□□□ 0.43
PHRF1-202ENST00000413872 WSCD1Q658N2 575 aa17.73■□□□□ 0.43
PHRF1-202ENST00000413872 TFAP2DQ7Z6R9 452 aa17.73■□□□□ 0.43
PHRF1-202ENST00000413872 OSCP1Q8WVF1 389 aa17.73■□□□□ 0.43
PHRF1-202ENST00000413872 BLOC1S6Q9UL45 172 aa17.73■□□□□ 0.43
PHRF1-202ENST00000413872 DERAQ9Y315 318 aa17.73■□□□□ 0.43
PHRF1-202ENST00000413872 ERI2A8K979 691 aaKnown RBP17.73■□□□□ 0.43
PHRF1-202ENST00000413872 CCDC130P13994 396 aa17.73■□□□□ 0.43
PHRF1-202ENST00000413872 WDR59Q6PJI9 974 aa17.73■□□□□ 0.43
PHRF1-202ENST00000413872 DACH2Q96NX9 599 aa17.73■□□□□ 0.43
PHRF1-202ENST00000413872 C2orf49Q9BVC5 232 aaPredicted RBP17.73■□□□□ 0.43
PHRF1-202ENST00000413872 FAM153AQ9UHL3 310 aa17.73■□□□□ 0.43
PHRF1-202ENST00000413872 B2RBV5 119 aa17.73■□□□□ 0.43
PHRF1-202ENST00000413872 AKAP10O43572 662 aa17.73■□□□□ 0.43
PHRF1-202ENST00000413872 PARNO95453 639 aaKnown RBP17.73■□□□□ 0.43
PHRF1-202ENST00000413872 PTPN3P26045 913 aa17.73■□□□□ 0.43
PHRF1-202ENST00000413872 MIPP30301 263 aa17.73■□□□□ 0.43
PHRF1-202ENST00000413872 NCALDP61601 193 aa17.73■□□□□ 0.43
PHRF1-202ENST00000413872 MEA1Q16626 185 aa17.73■□□□□ 0.43
PHRF1-202ENST00000413872 HECTD3Q5T447 861 aa17.73■□□□□ 0.43
PHRF1-202ENST00000413872 DCLRE1AQ6PJP8 1040 aa17.73■□□□□ 0.43
PHRF1-202ENST00000413872 NSL1Q96IY1 281 aa17.73■□□□□ 0.43
PHRF1-202ENST00000413872 SPG21Q9NZD8 308 aa17.73■□□□□ 0.43
PHRF1-202ENST00000413872 DNALI1O14645 258 aaPredicted RBP17.73■□□□□ 0.43
PHRF1-202ENST00000413872 USP41Q3LFD5 358 aa17.73■□□□□ 0.43
PHRF1-202ENST00000413872 SPANXN3Q5MJ09 141 aa17.73■□□□□ 0.43
PHRF1-202ENST00000413872 LBX2Q6XYB7 198 aa17.73■□□□□ 0.43
PHRF1-202ENST00000413872 KATNAL2Q8IYT4 538 aa17.73■□□□□ 0.43
PHRF1-202ENST00000413872 DNAJC19Q96DA6 116 aa17.73■□□□□ 0.43
PHRF1-202ENST00000413872 SOX13Q9UN79 622 aa17.73■□□□□ 0.43
PHRF1-202ENST00000413872 SIGLEC16A6NMB1 481 aa17.72■□□□□ 0.43
PHRF1-202ENST00000413872 MAPK8P45983 427 aa17.72■□□□□ 0.43
PHRF1-202ENST00000413872 BCL2L1Q07817 233 aa17.72■□□□□ 0.43
PHRF1-202ENST00000413872 PPP3CAQ08209 521 aa17.72■□□□□ 0.43
PHRF1-202ENST00000413872 NAB1Q13506 487 aa17.72■□□□□ 0.43
PHRF1-202ENST00000413872 LRRC38Q5VT99 294 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms