RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 PBX2P40425 430 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 CLCN4P51793 760 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 EPHB3P54753 998 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 ERVK-21P61565 698 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 DYNLT1P63172 113 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 MRPS25P82663 173 aaKnown RBP6.9□□□□□ -1.3
VPS41-204ENST00000413141 DR1Q01658 176 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 EFEMP1Q12805 493 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 MMRN1Q13201 1228 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 SEMA3BQ13214 749 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 NNTQ13423 1086 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 CAMK1Q14012 370 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 DHX34Q14147 1143 aaKnown RBP6.9□□□□□ -1.3
VPS41-204ENST00000413141 RAB30Q15771 203 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 ARL13BQ3SXY8 428 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 ANKRD20A8PQ5CZ79 823 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 PPP6R3Q5H9R7 873 aaPredicted RBP6.9□□□□□ -1.3
VPS41-204ENST00000413141 BRMS1LQ5PSV4 323 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 SNX30Q5VWJ9 437 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 SLC9A4Q6AI14 798 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 LILRA6Q6PI73 481 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 CCDC137Q6PK04 289 aaKnown RBP6.9□□□□□ -1.3
VPS41-204ENST00000413141 CCDC149Q6ZUS6 474 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 ITIH5Q86UX2 942 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 PYROXD2Q8N2H3 581 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 PQLC3Q8N755 202 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 MRPL43Q8N983 215 aaKnown RBP6.9□□□□□ -1.3
VPS41-204ENST00000413141 PCDH19Q8TAB3 1148 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 HDAC7Q8WUI4 952 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 C1orf54Q8WWF1 131 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 RUBCNQ92622 972 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 PSMG2Q969U7 264 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 MAGOHBQ96A72 148 aaKnown RBP6.9□□□□□ -1.3
VPS41-204ENST00000413141 HAUS1Q96CS2 278 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 ZNF512Q96ME7 567 aaPredicted RBP6.9□□□□□ -1.3
VPS41-204ENST00000413141 RUNDC3BQ96NL0 473 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 CSPG4P5Q96PW8 444 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 RNF157Q96PX1 679 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 CDK5RAP1Q96SZ6 601 aaKnown RBP6.9□□□□□ -1.3
VPS41-204ENST00000413141 PBX4Q9BYU1 374 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 DCLK3Q9C098 648 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 TKTL2Q9H0I9 626 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 LRRC19Q9H756 370 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 CCSER2Q9H7U1 834 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 HOMER3Q9NSC5 361 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 TMEM51Q9NW97 253 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 ARHGEF38Q9NXL2 777 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 STIM2Q9P246 746 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 RCOR3Q9P2K3 495 aaPredicted RBP6.9□□□□□ -1.3
VPS41-204ENST00000413141 UXTQ9UBK9 157 aaPredicted RBP6.9□□□□□ -1.3
VPS41-204ENST00000413141 PCYOX1Q9UHG3 505 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 SFMBT1Q9UHJ3 866 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 AMACRQ9UHK6 382 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 NUDT5Q9UKK9 219 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 NEU3Q9UQ49 428 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 TLR6Q9Y2C9 796 aa6.9□□□□□ -1.3
VPS41-204ENST00000413141 HSFX4A0A1B0GTS1 333 aaPredicted RBP6.89□□□□□ -1.31
VPS41-204ENST00000413141 HSFX3A0A1B0GWH4 333 aaPredicted RBP6.89□□□□□ -1.31
VPS41-204ENST00000413141 ZNF840PA6NDX5 716 aa6.89□□□□□ -1.31
VPS41-204ENST00000413141 FAM187AA6NFU0 413 aa6.89□□□□□ -1.31
VPS41-204ENST00000413141 ZSCAN5CA6NGD5 496 aaPredicted RBP6.89□□□□□ -1.31
VPS41-204ENST00000413141 BHMG1C9JSJ3 638 aaPredicted RBP6.89□□□□□ -1.31
VPS41-204ENST00000413141 H0YGN5 161 aa6.89□□□□□ -1.31
VPS41-204ENST00000413141 H3BRJ5 948 aa6.89□□□□□ -1.31
VPS41-204ENST00000413141 EEF2KO00418 725 aaKnown RBP6.89□□□□□ -1.31
VPS41-204ENST00000413141 APOL1O14791 398 aa6.89□□□□□ -1.31
VPS41-204ENST00000413141 TTI1O43156 1089 aa6.89□□□□□ -1.31
VPS41-204ENST00000413141 LIASO43766 372 aa6.89□□□□□ -1.31
VPS41-204ENST00000413141 LPXNO60711 386 aa6.89□□□□□ -1.31
VPS41-204ENST00000413141 C1RP00736 705 aa6.89□□□□□ -1.31
VPS41-204ENST00000413141 OAS1P00973 400 aaKnown RBP6.89□□□□□ -1.31
VPS41-204ENST00000413141 IGLV3-27P01718 113 aa6.89□□□□□ -1.31
VPS41-204ENST00000413141 LRG1P02750 347 aa6.89□□□□□ -1.31
VPS41-204ENST00000413141 SPATA31D3P0C874 917 aa6.89□□□□□ -1.31
VPS41-204ENST00000413141 PYGBP11216 843 aa6.89□□□□□ -1.31
VPS41-204ENST00000413141 PECAM1P16284 738 aaPredicted RBP6.89□□□□□ -1.31
VPS41-204ENST00000413141 GOT1P17174 413 aa6.89□□□□□ -1.31
VPS41-204ENST00000413141 TGM2P21980 687 aa6.89□□□□□ -1.31
VPS41-204ENST00000413141 CCR1P32246 355 aa6.89□□□□□ -1.31
VPS41-204ENST00000413141 COILP38432 576 aaPredicted RBP6.89□□□□□ -1.31
VPS41-204ENST00000413141 ARL4AP40617 200 aa6.89□□□□□ -1.31
VPS41-204ENST00000413141 PTGIRP43119 386 aa6.89□□□□□ -1.31
VPS41-204ENST00000413141 PPP3CCP48454 512 aa6.89□□□□□ -1.31
VPS41-204ENST00000413141 TUBP50607 506 aa6.89□□□□□ -1.31
VPS41-204ENST00000413141 TBX4P57082 545 aa6.89□□□□□ -1.31
VPS41-204ENST00000413141 VSNL1P62760 191 aa6.89□□□□□ -1.31
VPS41-204ENST00000413141 SLC7A5Q01650 507 aa6.89□□□□□ -1.31
VPS41-204ENST00000413141 OTUD4Q01804 1114 aaKnown RBP6.89□□□□□ -1.31
VPS41-204ENST00000413141 GPM6BQ13491 265 aa6.89□□□□□ -1.31
VPS41-204ENST00000413141 SNX1Q13596 522 aa6.89□□□□□ -1.31
VPS41-204ENST00000413141 DPYSQ14117 519 aa6.89□□□□□ -1.31
VPS41-204ENST00000413141 TFDP2Q14188 446 aa6.89□□□□□ -1.31
VPS41-204ENST00000413141 PPP2R5DQ14738 602 aa6.89□□□□□ -1.31
VPS41-204ENST00000413141 TRIP4Q15650 581 aaPredicted RBP6.89□□□□□ -1.31
VPS41-204ENST00000413141 TAF12Q16514 161 aa6.89□□□□□ -1.31
VPS41-204ENST00000413141 CCNG2Q16589 344 aa6.89□□□□□ -1.31
VPS41-204ENST00000413141 C10orf120Q5SQS8 335 aa6.89□□□□□ -1.31
VPS41-204ENST00000413141 PPP2R2DQ66LE6 453 aa6.89□□□□□ -1.31
VPS41-204ENST00000413141 NCBP2-AS2Q69YL0 99 aa6.89□□□□□ -1.31
VPS41-204ENST00000413141 WDR93Q6P2C0 686 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms