RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 KCNA5P22460 613 aa13.98□□□□□ -0.17
LIMS1-204ENST00000409441 RRM1P23921 792 aa13.98□□□□□ -0.17
LIMS1-204ENST00000409441 PPP3CCP48454 512 aa13.98□□□□□ -0.17
LIMS1-204ENST00000409441 DRG2P55039 364 aaKnown RBP13.98□□□□□ -0.17
LIMS1-204ENST00000409441 DR1Q01658 176 aa13.98□□□□□ -0.17
LIMS1-204ENST00000409441 TAF5Q15542 800 aa13.98□□□□□ -0.17
LIMS1-204ENST00000409441 CYP1B1Q16678 543 aa13.98□□□□□ -0.17
LIMS1-204ENST00000409441 EFHC1Q5JVL4 640 aa13.98□□□□□ -0.17
LIMS1-204ENST00000409441 SPDYCQ5MJ68 293 aa13.98□□□□□ -0.17
LIMS1-204ENST00000409441 OLFML1Q6UWY5 402 aa13.98□□□□□ -0.17
LIMS1-204ENST00000409441 LRIG3Q6UXM1 1119 aa13.98□□□□□ -0.17
LIMS1-204ENST00000409441 GAREM2Q75VX8 874 aa13.98□□□□□ -0.17
LIMS1-204ENST00000409441 PDZD4Q76G19 769 aaPredicted RBP13.98□□□□□ -0.17
LIMS1-204ENST00000409441 BHLHA9Q7RTU4 235 aa13.98□□□□□ -0.17
LIMS1-204ENST00000409441 SCD5Q86SK9 330 aa13.98□□□□□ -0.17
LIMS1-204ENST00000409441 TMEM150AQ86TG1 271 aa13.98□□□□□ -0.17
LIMS1-204ENST00000409441 PDZD8Q8NEN9 1154 aa13.98□□□□□ -0.17
LIMS1-204ENST00000409441 MAIP1Q8WWC4 291 aa13.98□□□□□ -0.17
LIMS1-204ENST00000409441 HLA-CQ95604 372 aa13.98□□□□□ -0.17
LIMS1-204ENST00000409441 ZIM3Q96PE6 472 aa13.98□□□□□ -0.17
LIMS1-204ENST00000409441 ATXN3LQ9H3M9 355 aa13.98□□□□□ -0.17
LIMS1-204ENST00000409441 UBE2ZQ9H832 354 aaPredicted RBP13.98□□□□□ -0.17
LIMS1-204ENST00000409441 TLR8Q9NR97 1041 aaKnown RBP13.98□□□□□ -0.17
LIMS1-204ENST00000409441 TRPM5Q9NZQ8 1165 aa13.98□□□□□ -0.17
LIMS1-204ENST00000409441 WDR35Q9P2L0 1181 aa13.98□□□□□ -0.17
LIMS1-204ENST00000409441 PCYOX1Q9UHG3 505 aa13.98□□□□□ -0.17
LIMS1-204ENST00000409441 LCMT1Q9UIC8 334 aa13.98□□□□□ -0.17
LIMS1-204ENST00000409441 CD207Q9UJ71 328 aa13.98□□□□□ -0.17
LIMS1-204ENST00000409441 CDH22Q9UJ99 828 aa13.98□□□□□ -0.17
LIMS1-204ENST00000409441 ANAPC7Q9UJX3 599 aa13.98□□□□□ -0.17
LIMS1-204ENST00000409441 SCINQ9Y6U3 715 aa13.98□□□□□ -0.17
LIMS1-204ENST00000409441 A0A1W2PQH9 124 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 ZNF197O14709 1029 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 FGF19O95750 216 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 ZDHHC11BP0C7U3 371 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 CCR2P41597 374 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 MARCKSL1P49006 195 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 GYS2P54840 703 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 YWHAGP61981 247 aaKnown RBP eCLIP13.97□□□□□ -0.17
LIMS1-204ENST00000409441 YWHAZP63104 245 aaKnown RBP13.97□□□□□ -0.17
LIMS1-204ENST00000409441 BSPRYQ5W0U4 402 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 SLC13A5Q86YT5 568 aaPredicted RBP13.97□□□□□ -0.17
LIMS1-204ENST00000409441 ARHGAP18Q8N392 663 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 C12orf50Q8NA57 414 aaPredicted RBP13.97□□□□□ -0.17
LIMS1-204ENST00000409441 OVCA2Q8WZ82 227 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 KHSRPQ92945 711 aaKnown RBP eCLIP13.97□□□□□ -0.17
LIMS1-204ENST00000409441 TCEAL4Q96EI5 215 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 MCRS1Q96EZ8 462 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 PIWIL1Q96J94 861 aaKnown RBP13.97□□□□□ -0.17
LIMS1-204ENST00000409441 NMUR1Q9HB89 426 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 A0A1W2PRU2 124 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 GOLGA6CA6NDK9 693 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 GRAP2O75791 330 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 GOLGA6DP0CG33 693 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 PYGMP11217 842 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 GJA1P17302 382 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 CDC25CP30307 473 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 PSEN1P49768 467 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 SLC5A9Q2M3M2 681 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 PRSS36Q5K4E3 855 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 FAM102AQ5T9C2 384 aaPredicted RBP13.97□□□□□ -0.17
LIMS1-204ENST00000409441 SNX30Q5VWJ9 437 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 DUPD1Q68J44 220 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 HFE2Q6ZVN8 426 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 PRELID2Q8N945 189 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 SMRP1Q8NCR6 262 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 MAFAQ8NHW3 353 aaPredicted RBP13.97□□□□□ -0.17
LIMS1-204ENST00000409441 FAM76AQ8TAV0 307 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 SHKBP1Q8TBC3 707 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 FAM149B1Q96BN6 582 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 BTBD6Q96KE9 485 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 RIPOR3Q96MK2 946 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 ERP44Q9BS26 406 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 WDR6Q9NNW5 1121 aaKnown RBP13.97□□□□□ -0.17
LIMS1-204ENST00000409441 OSER1Q9NX31 292 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 GOLGA6AQ9NYA3 693 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.97□□□□□ -0.17
LIMS1-204ENST00000409441 MRPS23Q9Y3D9 190 aaKnown RBP13.97□□□□□ -0.17
LIMS1-204ENST00000409441 NR2E1Q9Y466 385 aa13.97□□□□□ -0.17
LIMS1-204ENST00000409441 TCRBV5S1A1TA0A578 114 aa13.96□□□□□ -0.17
LIMS1-204ENST00000409441 MYO1FO00160 1098 aa13.96□□□□□ -0.17
LIMS1-204ENST00000409441 NRG2O14511 850 aaPredicted RBP13.96□□□□□ -0.17
LIMS1-204ENST00000409441 DAPK3O43293 454 aa13.96□□□□□ -0.17
LIMS1-204ENST00000409441 MOSPD3O75425 235 aa13.96□□□□□ -0.17
LIMS1-204ENST00000409441 PROSCO94903 275 aa13.96□□□□□ -0.17
LIMS1-204ENST00000409441 LTFP02788 710 aa13.96□□□□□ -0.17
LIMS1-204ENST00000409441 FYNP06241 537 aa13.96□□□□□ -0.17
LIMS1-204ENST00000409441 KRT3P12035 628 aa13.96□□□□□ -0.17
LIMS1-204ENST00000409441 FSHRP23945 695 aa13.96□□□□□ -0.17
LIMS1-204ENST00000409441 MAN1A1P33908 653 aa13.96□□□□□ -0.17
LIMS1-204ENST00000409441 SCNN1AP37088 669 aa13.96□□□□□ -0.17
LIMS1-204ENST00000409441 MTHFRP42898 656 aa13.96□□□□□ -0.17
LIMS1-204ENST00000409441 PTGIRP43119 386 aa13.96□□□□□ -0.17
LIMS1-204ENST00000409441 LMAN1P49257 510 aa13.96□□□□□ -0.17
LIMS1-204ENST00000409441 FNTAP49354 379 aa13.96□□□□□ -0.17
LIMS1-204ENST00000409441 GSCP56915 257 aaPredicted RBP13.96□□□□□ -0.17
LIMS1-204ENST00000409441 MAMLD1Q13495 774 aa13.96□□□□□ -0.17
LIMS1-204ENST00000409441 TRADDQ15628 312 aa13.96□□□□□ -0.17
LIMS1-204ENST00000409441 BTBD8Q5XKL5 378 aa13.96□□□□□ -0.17
LIMS1-204ENST00000409441 PLEKHA7Q6IQ23 1121 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms