RNA–Protein interactions for RNA: ENST00000407082.3

SMARCB1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 5 BASIC

Gene SMARCB1, Length 1,182 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-203ENST00000407082 BEST2Q8NFU1 509 aa13.43□□□□□ -0.26
SMARCB1-203ENST00000407082 MYCBPAPQ8TBZ2 947 aa13.43□□□□□ -0.26
SMARCB1-203ENST00000407082 C18orf25Q96B23 403 aaPredicted RBP13.43□□□□□ -0.26
SMARCB1-203ENST00000407082 HEXIM2Q96MH2 286 aaKnown RBP13.43□□□□□ -0.26
SMARCB1-203ENST00000407082 NT5C1AQ9BXI3 368 aa13.43□□□□□ -0.26
SMARCB1-203ENST00000407082 MAK16Q9BXY0 300 aaKnown RBP13.43□□□□□ -0.26
SMARCB1-203ENST00000407082 RASSF4Q9H2L5 321 aa13.43□□□□□ -0.26
SMARCB1-203ENST00000407082 EPB41L4BQ9H329 900 aa13.43□□□□□ -0.26
SMARCB1-203ENST00000407082 CDC42EP4Q9H3Q1 356 aaKnown RBP13.43□□□□□ -0.26
SMARCB1-203ENST00000407082 NRDE2Q9H7Z3 1164 aa13.43□□□□□ -0.26
SMARCB1-203ENST00000407082 KCNK12Q9HB15 430 aa13.43□□□□□ -0.26
SMARCB1-203ENST00000407082 PCDH9Q9HC56 1237 aa13.43□□□□□ -0.26
SMARCB1-203ENST00000407082 PPANQ9NQ55 473 aaKnown RBP13.43□□□□□ -0.26
SMARCB1-203ENST00000407082 DZANK1Q9NVP4 752 aa13.43□□□□□ -0.26
SMARCB1-203ENST00000407082 DNAJB4Q9UDY4 337 aa13.43□□□□□ -0.26
SMARCB1-203ENST00000407082 TPX2Q9ULW0 747 aaKnown RBP13.43□□□□□ -0.26
SMARCB1-203ENST00000407082 AGAP1Q9UPQ3 857 aa13.43□□□□□ -0.26
SMARCB1-203ENST00000407082 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.43□□□□□ -0.26
SMARCB1-203ENST00000407082 ACTL7BQ9Y614 415 aa13.43□□□□□ -0.26
SMARCB1-203ENST00000407082 CEP250Q9BV73 2442 aa13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 LRRD1A4D1F6 860 aa13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 ALDH2P05091 517 aa13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 NFICP08651 508 aa13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 IVDP26440 423 aa13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 OR1G1P47890 313 aa13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 BCAR1P56945 870 aa13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 RPL7AP62424 266 aaKnown RBP13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 DSC1Q08554 894 aa13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 TUSC3Q13454 348 aa13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 TFDP2Q14188 446 aa13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 ZBTB6Q15916 424 aa13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 ERMARDQ5T6L9 678 aa13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 GKAP1Q5VSY0 366 aaPredicted RBP13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 HIBCHQ6NVY1 386 aaPredicted RBP13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 DENND1BQ6P3S1 775 aa13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 CCDC149Q6ZUS6 474 aa13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 OTOP3Q7RTS5 596 aa13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 UNC93AQ86WB7 457 aa13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 CPNE8Q86YQ8 564 aa13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 ZDHHC17Q8IUH5 632 aa13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 COLGALT2Q8IYK4 626 aa13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 WDTC1Q8N5D0 677 aa13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 OTUD6BQ8N6M0 293 aa13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 ALLCQ8N6M5 410 aa13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 SLC4A11Q8NBS3 891 aa13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 TFAP2BQ92481 460 aa13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 MCRS1Q96EZ8 462 aa13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 XPO6Q96QU8 1125 aaKnown RBP13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 SELENOSQ9BQE4 189 aa13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 CCDC134Q9H6E4 229 aa13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 INTS9Q9NV88 658 aaKnown RBP13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 SIX4Q9UIU6 781 aa13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 CA14Q9ULX7 337 aa13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 POLIQ9UNA4 740 aa13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 SHOC2Q9UQ13 582 aa13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 NEU2Q9Y3R4 380 aa13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 FAM169AQ9Y6X4 670 aa13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 DMDP11532 3685 aa13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 SPTBN2O15020 2390 aa13.42□□□□□ -0.26
SMARCB1-203ENST00000407082 C5orf60A6NFR6 353 aa13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 CASTOR2A6NHX0 329 aa13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 GOLGA8SH3BPF8 625 aa13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 M0QYV0 167 aa13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 NARSO43776 548 aaKnown RBP13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 B4GALT3O60512 393 aa13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 CDH16O75309 829 aa13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 MICAL2O94851 1124 aa13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 GALTP07902 379 aa13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 TSHRP16473 764 aa13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 CYP3A5P20815 502 aa13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 KLRC2P26717 231 aa13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 PHBP35232 272 aa13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 CDKN2BP42772 138 aa13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 SOX4Q06945 474 aaPredicted RBP13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 AUHQ13825 339 aaKnown RBP13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 C2CD6Q53TS8 623 aa13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 TNFAIP8L3Q5GJ75 292 aa13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 KAZNQ674X7 775 aa13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 TTC19Q6DKK2 380 aaPredicted RBP13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 ZC3H14Q6PJT7 736 aaKnown RBP13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 LCLAT1Q6UWP7 414 aa13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 MFSD7Q6UXD7 560 aa13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 C4orf22Q6V702 233 aa13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 BBS12Q6ZW61 710 aa13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 CENPUQ71F23 418 aa13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 TAX1BP1Q86VP1 789 aa13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 VSIG1Q86XK7 387 aa13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 XYLT1Q86Y38 959 aa13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 CACNA2D3Q8IZS8 1091 aa13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 CNPY4Q8N129 248 aa13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 VPS52Q8N1B4 723 aa13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 SLC39A11Q8N1S5 342 aa13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 LRRC52Q8N7C0 313 aa13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 KCTD6Q8NC69 237 aa13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 ATG4AQ8WYN0 398 aa13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 CHMP6Q96FZ7 201 aa13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 TMEM169Q96HH4 297 aa13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 FAM84AQ96KN4 292 aa13.41□□□□□ -0.26
SMARCB1-203ENST00000407082 PLCD4Q9BRC7 762 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms