RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 LRRC4Q9HBW1 653 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 XPNPEP1Q9NQW7 623 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 PAK5Q9P286 719 aa12.31□□□□□ -0.44
HMGB1-206ENST00000405805 TAF4O00268 1085 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 OGTO15294 1046 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 MGEA5O60502 916 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 ZC3H11AO75152 810 aaKnown RBP eCLIP12.3□□□□□ -0.44
HMGB1-206ENST00000405805 AVPR1AP37288 418 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 NUDT2P50583 147 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 NAA20P61599 178 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 PTPRJQ12913 1337 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 KCTD2Q14681 263 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 N4BP2L1Q5TBK1 243 aaPredicted RBP12.3□□□□□ -0.44
HMGB1-206ENST00000405805 RWDD4Q6NW29 188 aaKnown RBP12.3□□□□□ -0.44
HMGB1-206ENST00000405805 TSHZ1Q6ZSZ6 1077 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 RBM15BQ8NDT2 890 aaKnown RBP12.3□□□□□ -0.44
HMGB1-206ENST00000405805 GABPB2Q8TAK5 448 aaPredicted RBP12.3□□□□□ -0.44
HMGB1-206ENST00000405805 MAGEC3Q8TD91 643 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 INPP5DQ92835 1189 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 GCNAQ96QF7 691 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 E5RJQ4 531 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 C2CD2LO14523 706 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 PEX1O43933 1283 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 TBX10O75333 385 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 MAPK10P53779 464 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 DAB2P98082 770 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 LPCAT4Q643R3 524 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 EFCAB12Q6NXP0 572 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 TNS4Q8IZW8 715 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 ZNF669Q96BR6 464 aaPredicted RBP12.3□□□□□ -0.44
HMGB1-206ENST00000405805 APOPT1Q96IL0 206 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 CPXM1Q96SM3 734 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 ELP3Q9H9T3 547 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 GID8Q9NWU2 228 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 WDR27A2RRH5 827 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 DHX15O43143 795 aaKnown RBP12.3□□□□□ -0.44
HMGB1-206ENST00000405805 TPST1O60507 370 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 IVDP26440 423 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 MAP4P27816 1152 aaKnown RBP12.3□□□□□ -0.44
HMGB1-206ENST00000405805 MAGEA10P43363 369 aaPredicted RBP12.3□□□□□ -0.44
HMGB1-206ENST00000405805 PTPN11Q06124 597 aaPredicted RBP12.3□□□□□ -0.44
HMGB1-206ENST00000405805 GRM1Q13255 1194 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 HABP4Q5JVS0 413 aaKnown RBP12.3□□□□□ -0.44
HMGB1-206ENST00000405805 VWA5B1Q5TIE3 1220 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 EXOC8Q8IYI6 725 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 CENPOQ9BU64 300 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 LNPEPQ9UIQ6 1025 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 TTLL13PA6NNM8 815 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 LINGO3P0C6S8 592 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 TPH1P17752 444 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 COPAP53621 1224 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 TAP1Q03518 808 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 ITGA7Q13683 1181 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 RPS6KA2Q15349 733 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 GOLGA7BQ2TAP0 167 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 ANKRD20A4Q4UJ75 823 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 RNASEH2BQ5TBB1 312 aaKnown RBP12.3□□□□□ -0.44
HMGB1-206ENST00000405805 ANO7Q6IWH7 933 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 PTAR1Q7Z6K3 402 aaPredicted RBP12.3□□□□□ -0.44
HMGB1-206ENST00000405805 VSIG10LQ86VR7 867 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 RBM12BQ8IXT5 1001 aaKnown RBP12.3□□□□□ -0.44
HMGB1-206ENST00000405805 SEPT1Q8WYJ6 367 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 DDX1Q92499 740 aaKnown RBP12.3□□□□□ -0.44
HMGB1-206ENST00000405805 TRAPPC9Q96Q05 1148 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 ZNF184Q99676 751 aaPredicted RBP12.3□□□□□ -0.44
HMGB1-206ENST00000405805 SYT15Q9BQS2 421 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 SNX25Q9H3E2 840 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 ACSS3Q9H6R3 686 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 TUBA8Q9NY65 449 aaPredicted RBP12.3□□□□□ -0.44
HMGB1-206ENST00000405805 PLA2G4CQ9UP65 541 aa12.3□□□□□ -0.44
HMGB1-206ENST00000405805 BTAF1O14981 1849 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 MYH1P12882 1939 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 MYH4Q9Y623 1939 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 TM9SF1O15321 606 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 LRCH4O75427 683 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 VTNP04004 478 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 VAV1P15498 845 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 STIP1P31948 543 aaKnown RBP12.29□□□□□ -0.44
HMGB1-206ENST00000405805 SNRPFP62306 86 aaKnown RBP12.29□□□□□ -0.44
HMGB1-206ENST00000405805 DCAF6Q58WW2 860 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 EEF1DP3Q658K8 133 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 UNC5BQ8IZJ1 945 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 C12orf50Q8NA57 414 aaPredicted RBP12.29□□□□□ -0.44
HMGB1-206ENST00000405805 FAM136AQ96C01 138 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 MARK4Q96L34 752 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 C17orf75Q9HAS0 396 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 KLK14Q9P0G3 267 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 RABGEF1Q9UJ41 708 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 CARD8Q9Y2G2 431 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 GOLGA4Q13439 2230 aaKnown RBP12.29□□□□□ -0.44
HMGB1-206ENST00000405805 ZNF541Q9H0D2 1346 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 IL1R2P27930 398 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 CDKN2BP42772 138 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 HADHBP55084 474 aaKnown RBP12.29□□□□□ -0.44
HMGB1-206ENST00000405805 PKNOX1P55347 436 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 SLC12A1Q13621 1099 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 CGB2Q6NT52 195 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 C10orf82Q8WW14 230 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 WDR35Q9P2L0 1181 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 SLC39A10Q9ULF5 831 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms