RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 DNMT3LQ9UJW3 386 aa14.78□□□□□ -0.04
SKA1-202ENST00000398452 COL4A4P53420 1690 aaPredicted RBP14.77□□□□□ -0.04
SKA1-202ENST00000398452 CCDC195A0A1B0GUA6 201 aa14.77□□□□□ -0.05
SKA1-202ENST00000398452 LRRD1A4D1F6 860 aa14.77□□□□□ -0.05
SKA1-202ENST00000398452 C2orf72A6NCS6 295 aa14.77□□□□□ -0.05
SKA1-202ENST00000398452 ZNF840PA6NDX5 716 aa14.77□□□□□ -0.05
SKA1-202ENST00000398452 CES2O00748 559 aa14.77□□□□□ -0.05
SKA1-202ENST00000398452 RFPL2O75678 378 aa14.77□□□□□ -0.05
SKA1-202ENST00000398452 FYNP06241 537 aa14.77□□□□□ -0.05
SKA1-202ENST00000398452 ZDHHC11BP0C7U3 371 aa14.77□□□□□ -0.05
SKA1-202ENST00000398452 CCR1P32246 355 aa14.77□□□□□ -0.05
SKA1-202ENST00000398452 HDAC4P56524 1084 aa14.77□□□□□ -0.05
SKA1-202ENST00000398452 TBX4P57082 545 aa14.77□□□□□ -0.05
SKA1-202ENST00000398452 TAS2R40P59535 323 aa14.77□□□□□ -0.05
SKA1-202ENST00000398452 BRMS1LQ5PSV4 323 aa14.77□□□□□ -0.05
SKA1-202ENST00000398452 ERMARDQ5T6L9 678 aa14.77□□□□□ -0.05
SKA1-202ENST00000398452 SNX30Q5VWJ9 437 aa14.77□□□□□ -0.05
SKA1-202ENST00000398452 TRNP1Q6NT89 227 aa14.77□□□□□ -0.05
SKA1-202ENST00000398452 MSANTD2Q6P1R3 559 aa14.77□□□□□ -0.05
SKA1-202ENST00000398452 EP400NLQ6ZTU2 488 aa14.77□□□□□ -0.05
SKA1-202ENST00000398452 TAC4Q86UU9 113 aa14.77□□□□□ -0.05
SKA1-202ENST00000398452 FAM131BQ86XD5 332 aa14.77□□□□□ -0.05
SKA1-202ENST00000398452 MIB1Q86YT6 1006 aa14.77□□□□□ -0.05
SKA1-202ENST00000398452 KATNAL2Q8IYT4 538 aa14.77□□□□□ -0.05
SKA1-202ENST00000398452 ZNF276Q8N554 614 aa14.77□□□□□ -0.05
SKA1-202ENST00000398452 MNS1Q8NEH6 495 aa14.77□□□□□ -0.05
SKA1-202ENST00000398452 EXD1Q8NHP7 514 aa14.77□□□□□ -0.05
SKA1-202ENST00000398452 TEKT4Q8WW24 435 aa14.77□□□□□ -0.05
SKA1-202ENST00000398452 MAIP1Q8WWC4 291 aa14.77□□□□□ -0.05
SKA1-202ENST00000398452 CD101Q93033 1021 aa14.77□□□□□ -0.05
SKA1-202ENST00000398452 NT5C3BQ969T7 300 aa14.77□□□□□ -0.05
SKA1-202ENST00000398452 MAK16Q9BXY0 300 aaKnown RBP14.77□□□□□ -0.05
SKA1-202ENST00000398452 PRKD2Q9BZL6 878 aa14.77□□□□□ -0.05
SKA1-202ENST00000398452 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.77□□□□□ -0.05
SKA1-202ENST00000398452 SFMBT1Q9UHJ3 866 aa14.77□□□□□ -0.05
SKA1-202ENST00000398452 ZMYM5Q9UJ78 669 aa14.77□□□□□ -0.05
SKA1-202ENST00000398452 CDC23Q9UJX2 597 aa14.77□□□□□ -0.05
SKA1-202ENST00000398452 NUDT5Q9UKK9 219 aa14.77□□□□□ -0.05
SKA1-202ENST00000398452 PATJQ8NI35 1801 aa14.77□□□□□ -0.05
SKA1-202ENST00000398452 SLC12A8A0AV02 714 aa14.76□□□□□ -0.05
SKA1-202ENST00000398452 DDX3YO15523 660 aaKnown RBP14.76□□□□□ -0.05
SKA1-202ENST00000398452 IRAK2O43187 625 aa14.76□□□□□ -0.05
SKA1-202ENST00000398452 ENDOD1O94919 500 aa14.76□□□□□ -0.05
SKA1-202ENST00000398452 POU2F2P09086 479 aa14.76□□□□□ -0.05
SKA1-202ENST00000398452 MBL2P11226 248 aaPredicted RBP14.76□□□□□ -0.05
SKA1-202ENST00000398452 PFKLP17858 780 aa14.76□□□□□ -0.05
SKA1-202ENST00000398452 DDX6P26196 483 aaKnown RBP eCLIP14.76□□□□□ -0.05
SKA1-202ENST00000398452 CXCR5P32302 372 aa14.76□□□□□ -0.05
SKA1-202ENST00000398452 ARL4AP40617 200 aa14.76□□□□□ -0.05
SKA1-202ENST00000398452 COG7P83436 770 aa14.76□□□□□ -0.05
SKA1-202ENST00000398452 NNTQ13423 1086 aa14.76□□□□□ -0.05
SKA1-202ENST00000398452 PDK2Q15119 407 aa14.76□□□□□ -0.05
SKA1-202ENST00000398452 WHAMMP3Q1A5X7 153 aa14.76□□□□□ -0.05
SKA1-202ENST00000398452 SMTNL2Q2TAL5 461 aa14.76□□□□□ -0.05
SKA1-202ENST00000398452 TCEAL5Q5H9L2 206 aa14.76□□□□□ -0.05
SKA1-202ENST00000398452 SH3PXD2AQ5TCZ1 1133 aa14.76□□□□□ -0.05
SKA1-202ENST00000398452 DAB2IPQ5VWQ8 1189 aa14.76□□□□□ -0.05
SKA1-202ENST00000398452 KLHDC10Q6PID8 442 aa14.76□□□□□ -0.05
SKA1-202ENST00000398452 PSTKQ8IV42 348 aaKnown RBP14.76□□□□□ -0.05
SKA1-202ENST00000398452 ATP6V0D2Q8N8Y2 350 aa14.76□□□□□ -0.05
SKA1-202ENST00000398452 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.76□□□□□ -0.05
SKA1-202ENST00000398452 SMG7Q92540 1137 aaKnown RBP14.76□□□□□ -0.05
SKA1-202ENST00000398452 KRT35Q92764 455 aa14.76□□□□□ -0.05
SKA1-202ENST00000398452 CAPZA3Q96KX2 299 aa14.76□□□□□ -0.05
SKA1-202ENST00000398452 TLR6Q9Y2C9 796 aa14.76□□□□□ -0.05
SKA1-202ENST00000398452 HBS1LQ9Y450 684 aaKnown RBP14.76□□□□□ -0.05
SKA1-202ENST00000398452 TRANK1O15050 2925 aa14.76□□□□□ -0.05
SKA1-202ENST00000398452 REV3LO60673 3130 aa14.75□□□□□ -0.05
SKA1-202ENST00000398452 TRAV19A0A0A6YYK7 116 aa14.75□□□□□ -0.05
SKA1-202ENST00000398452 GOLGA6L10A0A0M3HER8 536 aa14.75□□□□□ -0.05
SKA1-202ENST00000398452 MDM4O15151 490 aa14.75□□□□□ -0.05
SKA1-202ENST00000398452 F11P03951 625 aa14.75□□□□□ -0.05
SKA1-202ENST00000398452 RARAP10276 462 aa14.75□□□□□ -0.05
SKA1-202ENST00000398452 ZNF135P52742 658 aaPredicted RBP14.75□□□□□ -0.05
SKA1-202ENST00000398452 CDH6P55285 790 aa14.75□□□□□ -0.05
SKA1-202ENST00000398452 COPS2P61201 443 aa14.75□□□□□ -0.05
SKA1-202ENST00000398452 SLC25A11Q02978 314 aaKnown RBP14.75□□□□□ -0.05
SKA1-202ENST00000398452 PPP2R5DQ14738 602 aa14.75□□□□□ -0.05
SKA1-202ENST00000398452 TRIP4Q15650 581 aaPredicted RBP14.75□□□□□ -0.05
SKA1-202ENST00000398452 KCNT1Q5JUK3 1230 aa14.75□□□□□ -0.05
SKA1-202ENST00000398452 ACBD5Q5T8D3 534 aaPredicted RBP14.75□□□□□ -0.05
SKA1-202ENST00000398452 NUGGCQ68CJ6 796 aa14.75□□□□□ -0.05
SKA1-202ENST00000398452 CPNE8Q86YQ8 564 aa14.75□□□□□ -0.05
SKA1-202ENST00000398452 UNC45BQ8IWX7 931 aa14.75□□□□□ -0.05
SKA1-202ENST00000398452 HS6ST3Q8IZP7 471 aa14.75□□□□□ -0.05
SKA1-202ENST00000398452 EFHBQ8N7U6 833 aa14.75□□□□□ -0.05
SKA1-202ENST00000398452 CEP112Q8N8E3 955 aa14.75□□□□□ -0.05
SKA1-202ENST00000398452 NTAN1Q96AB6 310 aa14.75□□□□□ -0.05
SKA1-202ENST00000398452 SNRNP25Q9BV90 132 aaKnown RBP14.75□□□□□ -0.05
SKA1-202ENST00000398452 CALN1Q9BXU9 219 aa14.75□□□□□ -0.05
SKA1-202ENST00000398452 TKTL2Q9H0I9 626 aa14.75□□□□□ -0.05
SKA1-202ENST00000398452 SLITRK6Q9H5Y7 841 aa14.75□□□□□ -0.05
SKA1-202ENST00000398452 DHX35Q9H5Z1 703 aaKnown RBP14.75□□□□□ -0.05
SKA1-202ENST00000398452 CCSER2Q9H7U1 834 aa14.75□□□□□ -0.05
SKA1-202ENST00000398452 ZNF334Q9HCZ1 680 aaPredicted RBP14.75□□□□□ -0.05
SKA1-202ENST00000398452 RRAGDQ9NQL2 400 aaPredicted RBP14.75□□□□□ -0.05
SKA1-202ENST00000398452 PIGVQ9NUD9 493 aa14.75□□□□□ -0.05
SKA1-202ENST00000398452 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.75□□□□□ -0.05
SKA1-202ENST00000398452 OSER1Q9NX31 292 aa14.75□□□□□ -0.05
SKA1-202ENST00000398452 STIM2Q9P246 746 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms