RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 STK39Q9UEW8 545 aa10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 PRRG1O14668 218 aa10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 TPBGLP0DKB5 382 aa10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 ALOX15P16050 662 aaPredicted RBP10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 CHRNA5P30532 468 aa10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 ELK3P41970 407 aa10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 SERPINH1P50454 418 aaKnown RBP10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 THOC7Q6I9Y2 204 aaKnown RBP10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 LRRC74BQ6ZQY2 392 aa10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 NT5DC3Q86UY8 548 aa10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 CREG2Q8IUH2 290 aa10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 CEP44Q9C0F1 390 aa10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 GPRC5DQ9NZD1 345 aa10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 AFF2P51816 1311 aa10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 ALADP13716 330 aa10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 SLC1A6P48664 564 aa10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 NCKAP1LP55160 1127 aa10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 ZNF177Q13360 481 aaPredicted RBP10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 SNAPC2Q13487 334 aa10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 ITGA9Q13797 1035 aa10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 N4BP2L1Q5TBK1 243 aaPredicted RBP10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 YAF2Q8IY57 180 aa10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 MYO1HQ8N1T3 1032 aa10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 RMND5BQ96G75 393 aaPredicted RBP10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 KAZALD1Q96I82 304 aa10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 GMCL1Q96IK5 515 aa10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 PPP1R10Q96QC0 940 aaKnown RBP10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 REXO4Q9GZR2 422 aaKnown RBP10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 AVENQ9NQS1 362 aaPredicted RBP10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 MRPL39Q9NYK5 338 aaKnown RBP10.52□□□□□ -0.73
LIMCH1-203ENST00000396595 IFNA14P01570 189 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 COX10Q12887 443 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 NCF4Q15080 339 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 PKN2Q16513 984 aaKnown RBP10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 TDRD10Q5VZ19 366 aaKnown RBP10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 ZNF554Q86TJ5 538 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 FUKQ8N0W3 1084 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 ZCCHC7Q8N3Z6 543 aaKnown RBP10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 GDPD5Q8WTR4 605 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 TMEM176AQ96HP8 235 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 DUSP9Q99956 384 aaKnown RBP10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 COMMD8Q9NX08 183 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 BCL10O95999 233 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 RARAP10276 462 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 PSMA3P25788 255 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 IFI35P80217 286 aaPredicted RBP10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 YTHDF3Q7Z739 585 aaKnown RBP10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 COLGALT1Q8NBJ5 622 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 CENPTQ96BT3 561 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 ZFP42Q96MM3 310 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 POLG2Q9UHN1 485 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 VANGL2Q9ULK5 521 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 JCHAINP01591 159 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 IRF1P10914 325 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 CSHL1Q14406 222 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 PACS2Q86VP3 889 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 ERO1BQ86YB8 467 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 UBASH3BQ8TF42 649 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 PARK7Q99497 189 aaKnown RBP10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 FAM192AQ9GZU8 254 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 FBXO28Q9NVF7 368 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 CROTQ9UKG9 612 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 OR1G1P47890 313 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 GCNT1Q02742 428 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 ORC1Q13415 861 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 DDX39BQ13838 428 aaKnown RBP10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 GRTP1Q5TC63 336 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 FAM131BQ86XD5 332 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 EMC1Q8N766 993 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 NSMCE2Q96MF7 247 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 POP1Q99575 1024 aaKnown RBP10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 KCTD14Q9BQ13 255 aaPredicted RBP10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 FICDQ9BVA6 458 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 PRDM5Q9NQX1 630 aaPredicted RBP10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 KRT84Q9NSB2 600 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 ADAM30Q9UKF2 790 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 MROH7Q68CQ1 1323 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 AK9Q5TCS8 1911 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 DDX3XO00571 662 aaKnown RBP eCLIP10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 CRTAMO95727 393 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 CYP2F1P24903 491 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 TNFRSF8P28908 595 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 MYL6P60660 151 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 ABATP80404 500 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 CDK16Q00536 496 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 FAM98BQ52LJ0 330 aaKnown RBP10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 KRT78Q8N1N4 520 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 ZNF75CPQ92670 426 aaPredicted RBP10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 FAM120BQ96EK7 910 aaKnown RBP10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 SRPK1Q96SB4 655 aaKnown RBP10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 GORASP1Q9BQQ3 440 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 BDH2Q9BUT1 245 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 CHID1Q9BWS9 393 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 SLC7A5P2Q9GIP4 190 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 KCNH4Q9UQ05 1017 aa10.51□□□□□ -0.73
LIMCH1-203ENST00000396595 C1orf232A0A0U1RR37 186 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 ME2P23368 584 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 CD151P48509 253 aa10.5□□□□□ -0.73
LIMCH1-203ENST00000396595 ALDH5A1P51649 535 aaPredicted RBP10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms