RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 SH3GL3Q99963 347 aa13.13□□□□□ -0.31
SHMT1-205ENST00000395684 NRDE2Q9H7Z3 1164 aa13.13□□□□□ -0.31
SHMT1-205ENST00000395684 EMCNQ9ULC0 261 aa13.13□□□□□ -0.31
SHMT1-205ENST00000395684 PCDHA11Q9Y5I1 949 aa13.13□□□□□ -0.31
SHMT1-205ENST00000395684 LGR5O75473 907 aa13.13□□□□□ -0.31
SHMT1-205ENST00000395684 GCATO75600 419 aa13.13□□□□□ -0.31
SHMT1-205ENST00000395684 GABBR2O75899 941 aa13.13□□□□□ -0.31
SHMT1-205ENST00000395684 AOC1P19801 751 aa13.13□□□□□ -0.31
SHMT1-205ENST00000395684 ATICP31939 592 aa13.13□□□□□ -0.31
SHMT1-205ENST00000395684 HDAC4P56524 1084 aa13.13□□□□□ -0.31
SHMT1-205ENST00000395684 AP2B1P63010 937 aa13.13□□□□□ -0.31
SHMT1-205ENST00000395684 INCA1Q0VD86 236 aa13.13□□□□□ -0.31
SHMT1-205ENST00000395684 SLC10A6Q3KNW5 377 aa13.13□□□□□ -0.31
SHMT1-205ENST00000395684 MBLAC2Q68D91 279 aa13.13□□□□□ -0.31
SHMT1-205ENST00000395684 LBX2Q6XYB7 198 aa13.13□□□□□ -0.31
SHMT1-205ENST00000395684 TIFABQ6ZNK6 161 aa13.13□□□□□ -0.31
SHMT1-205ENST00000395684 STK32BQ9NY57 414 aa13.13□□□□□ -0.31
SHMT1-205ENST00000395684 DPYSL4O14531 572 aa13.12□□□□□ -0.31
SHMT1-205ENST00000395684 ZCCHC18P0CG32 403 aa13.12□□□□□ -0.31
SHMT1-205ENST00000395684 CYP2F1P24903 491 aa13.12□□□□□ -0.31
SHMT1-205ENST00000395684 RPS12P25398 132 aaKnown RBP13.12□□□□□ -0.31
SHMT1-205ENST00000395684 SDC4P31431 198 aa13.12□□□□□ -0.31
SHMT1-205ENST00000395684 ATXN1P54253 815 aaKnown RBP13.12□□□□□ -0.31
SHMT1-205ENST00000395684 RPL10AP62906 217 aaKnown RBP13.12□□□□□ -0.31
SHMT1-205ENST00000395684 PDE1BQ01064 536 aa13.12□□□□□ -0.31
SHMT1-205ENST00000395684 TBCCQ15814 346 aa13.12□□□□□ -0.31
SHMT1-205ENST00000395684 RABGAP1LQ5R372 815 aa13.12□□□□□ -0.31
SHMT1-205ENST00000395684 PPP1R26Q5T8A7 1209 aaPredicted RBP13.12□□□□□ -0.31
SHMT1-205ENST00000395684 TEDDM1Q5T9Z0 273 aa13.12□□□□□ -0.31
SHMT1-205ENST00000395684 C6orf163Q5TEZ5 329 aa13.12□□□□□ -0.31
SHMT1-205ENST00000395684 PIWIL2Q8TC59 973 aaKnown RBP13.12□□□□□ -0.31
SHMT1-205ENST00000395684 PPP1R16BQ96T49 567 aa13.12□□□□□ -0.31
SHMT1-205ENST00000395684 ECSITQ9BQ95 431 aa13.12□□□□□ -0.31
SHMT1-205ENST00000395684 ZNF670Q9BS34 389 aa13.12□□□□□ -0.31
SHMT1-205ENST00000395684 IFT122Q9HBG6 1241 aa13.12□□□□□ -0.31
SHMT1-205ENST00000395684 NDE1Q9NXR1 346 aa13.12□□□□□ -0.31
SHMT1-205ENST00000395684 SOX13Q9UN79 622 aa13.12□□□□□ -0.31
SHMT1-205ENST00000395684 DNAJC16Q9Y2G8 782 aa13.12□□□□□ -0.31
SHMT1-205ENST00000395684 F5H423 210 aaPredicted RBP13.12□□□□□ -0.31
SHMT1-205ENST00000395684 NOP56O00567 594 aaKnown RBP13.12□□□□□ -0.31
SHMT1-205ENST00000395684 ALDOAP04075 364 aaKnown RBP13.12□□□□□ -0.31
SHMT1-205ENST00000395684 LYNP07948 512 aa13.12□□□□□ -0.31
SHMT1-205ENST00000395684 FGF3P11487 239 aaPredicted RBP13.12□□□□□ -0.31
SHMT1-205ENST00000395684 TPSB2P20231 275 aa13.12□□□□□ -0.31
SHMT1-205ENST00000395684 KCNA4P22459 653 aa13.12□□□□□ -0.31
SHMT1-205ENST00000395684 CRABP2P29373 138 aa13.12□□□□□ -0.31
SHMT1-205ENST00000395684 SERPINB9P50453 376 aa13.12□□□□□ -0.31
SHMT1-205ENST00000395684 CRADDP78560 199 aa13.12□□□□□ -0.31
SHMT1-205ENST00000395684 DSG1Q02413 1049 aa13.12□□□□□ -0.31
SHMT1-205ENST00000395684 PRKG1Q13976 671 aa13.12□□□□□ -0.31
SHMT1-205ENST00000395684 TPSAB1Q15661 275 aa13.12□□□□□ -0.31
SHMT1-205ENST00000395684 GSTA3Q16772 222 aa13.12□□□□□ -0.31
SHMT1-205ENST00000395684 GOLGA7BQ2TAP0 167 aa13.12□□□□□ -0.31
SHMT1-205ENST00000395684 TMCO4Q5TGY1 634 aa13.12□□□□□ -0.31
SHMT1-205ENST00000395684 KYAT3Q6YP21 454 aaKnown RBP13.12□□□□□ -0.31
SHMT1-205ENST00000395684 PLPPR4Q7Z2D5 763 aa13.12□□□□□ -0.31
SHMT1-205ENST00000395684 GALNT15Q8N3T1 639 aa13.12□□□□□ -0.31
SHMT1-205ENST00000395684 POU5F2Q8N7G0 328 aa13.12□□□□□ -0.31
SHMT1-205ENST00000395684 PPP1R14CQ8TAE6 165 aa13.12□□□□□ -0.31
SHMT1-205ENST00000395684 USP6NLQ92738 828 aa13.12□□□□□ -0.31
SHMT1-205ENST00000395684 CPB2Q96IY4 423 aa13.12□□□□□ -0.31
SHMT1-205ENST00000395684 B3GNT5Q9BYG0 378 aa13.12□□□□□ -0.31
SHMT1-205ENST00000395684 DNAJB4Q9UDY4 337 aa13.12□□□□□ -0.31
SHMT1-205ENST00000395684 WDR27A2RRH5 827 aa13.11□□□□□ -0.31
SHMT1-205ENST00000395684 MDM4O15151 490 aa13.11□□□□□ -0.31
SHMT1-205ENST00000395684 BUD23O43709 281 aaKnown RBP13.11□□□□□ -0.31
SHMT1-205ENST00000395684 SORBS2O94875 1100 aaKnown RBP13.11□□□□□ -0.31
SHMT1-205ENST00000395684 P4HA1P13674 534 aa13.11□□□□□ -0.31
SHMT1-205ENST00000395684 INHBEP58166 350 aa13.11□□□□□ -0.31
SHMT1-205ENST00000395684 CDC16Q13042 620 aa13.11□□□□□ -0.31
SHMT1-205ENST00000395684 RALGPS1Q5JS13 557 aa13.11□□□□□ -0.31
SHMT1-205ENST00000395684 N4BP2L1Q5TBK1 243 aaPredicted RBP13.11□□□□□ -0.31
SHMT1-205ENST00000395684 DPY19L2Q6NUT2 758 aa13.11□□□□□ -0.31
SHMT1-205ENST00000395684 KCNT2Q6UVM3 1135 aa13.11□□□□□ -0.31
SHMT1-205ENST00000395684 RNF111Q6ZNA4 994 aa13.11□□□□□ -0.31
SHMT1-205ENST00000395684 MAVSQ7Z434 540 aa13.11□□□□□ -0.31
SHMT1-205ENST00000395684 TTC30AQ86WT1 665 aa13.11□□□□□ -0.31
SHMT1-205ENST00000395684 NCAPG2Q86XI2 1143 aa13.11□□□□□ -0.31
SHMT1-205ENST00000395684 CDKL3Q8IVW4 592 aaPredicted RBP13.11□□□□□ -0.31
SHMT1-205ENST00000395684 WDR75Q8IWA0 830 aaKnown RBP13.11□□□□□ -0.31
SHMT1-205ENST00000395684 NR1H4Q96RI1 486 aaPredicted RBP13.11□□□□□ -0.31
SHMT1-205ENST00000395684 TBCBQ99426 244 aa13.11□□□□□ -0.31
SHMT1-205ENST00000395684 NT5C1AQ9BXI3 368 aa13.11□□□□□ -0.31
SHMT1-205ENST00000395684 GPAMQ9HCL2 828 aa13.11□□□□□ -0.31
SHMT1-205ENST00000395684 GJA3Q9Y6H8 435 aa13.11□□□□□ -0.31
SHMT1-205ENST00000395684 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.11□□□□□ -0.31
SHMT1-205ENST00000395684 SOCS7O14512 581 aa13.11□□□□□ -0.31
SHMT1-205ENST00000395684 PAPSS1O43252 624 aaPredicted RBP13.11□□□□□ -0.31
SHMT1-205ENST00000395684 ATP5BP06576 529 aaKnown RBP13.11□□□□□ -0.31
SHMT1-205ENST00000395684 L1CAMP32004 1257 aa13.11□□□□□ -0.31
SHMT1-205ENST00000395684 ARRB2P32121 409 aa13.11□□□□□ -0.31
SHMT1-205ENST00000395684 SLC1A6P48664 564 aa13.11□□□□□ -0.31
SHMT1-205ENST00000395684 SLC6A3Q01959 620 aa13.11□□□□□ -0.31
SHMT1-205ENST00000395684 PDE1CQ14123 709 aaPredicted RBP13.11□□□□□ -0.31
SHMT1-205ENST00000395684 AMHR2Q16671 573 aa13.11□□□□□ -0.31
SHMT1-205ENST00000395684 CELF3Q5SZQ8 465 aaKnown RBP13.11□□□□□ -0.31
SHMT1-205ENST00000395684 CWF19L1Q69YN2 538 aaKnown RBP13.11□□□□□ -0.31
SHMT1-205ENST00000395684 RAPH1Q70E73 1250 aa13.11□□□□□ -0.31
SHMT1-205ENST00000395684 RIOX2Q8IUF8 465 aa13.11□□□□□ -0.31
SHMT1-205ENST00000395684 EXOC8Q8IYI6 725 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms