RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 ADAM32Q8TC27 787 aa22.62■■□□□ 1.21
CLN3-207ENST00000395653 SLC39A13Q96H72 371 aa22.62■■□□□ 1.21
CLN3-207ENST00000395653 NUCKS1Q9H1E3 243 aaKnown RBP22.62■■□□□ 1.21
CLN3-207ENST00000395653 WDR35Q9P2L0 1181 aa22.62■■□□□ 1.21
CLN3-207ENST00000395653 ARIH1Q9Y4X5 557 aaPredicted RBP22.62■■□□□ 1.21
CLN3-207ENST00000395653 PALM2-AKAP2B1ALY0 433 aaPredicted RBP22.61■■□□□ 1.21
CLN3-207ENST00000395653 IRAK2O43187 625 aa22.61■■□□□ 1.21
CLN3-207ENST00000395653 NOS2P35228 1153 aa22.61■■□□□ 1.21
CLN3-207ENST00000395653 NSFP46459 744 aaKnown RBP22.61■■□□□ 1.21
CLN3-207ENST00000395653 CDK17Q00537 523 aa22.61■■□□□ 1.21
CLN3-207ENST00000395653 EIF4EBP2Q13542 120 aaPredicted RBP22.61■■□□□ 1.21
CLN3-207ENST00000395653 FAM102AQ5T9C2 384 aaPredicted RBP22.61■■□□□ 1.21
CLN3-207ENST00000395653 E4F1Q66K89 784 aaPredicted RBP22.61■■□□□ 1.21
CLN3-207ENST00000395653 MMS22LQ6ZRQ5 1243 aa22.61■■□□□ 1.21
CLN3-207ENST00000395653 TPGS1Q6ZTW0 290 aa22.61■■□□□ 1.21
CLN3-207ENST00000395653 C12orf40Q86WS4 652 aa22.61■■□□□ 1.21
CLN3-207ENST00000395653 PRSS33Q8NF86 280 aa22.61■■□□□ 1.21
CLN3-207ENST00000395653 AZIN2Q96A70 460 aa22.61■■□□□ 1.21
CLN3-207ENST00000395653 FCRL2Q96LA5 508 aaPredicted RBP22.61■■□□□ 1.21
CLN3-207ENST00000395653 BBS2Q9BXC9 721 aa22.61■■□□□ 1.21
CLN3-207ENST00000395653 RBM12Q9NTZ6 932 aaKnown RBP22.61■■□□□ 1.21
CLN3-207ENST00000395653 SEPT11Q9NVA2 429 aaKnown RBP22.61■■□□□ 1.21
CLN3-207ENST00000395653 CAPN11Q9UMQ6 739 aa22.61■■□□□ 1.21
CLN3-207ENST00000395653 FAM170AA1A519 330 aa22.6■■□□□ 1.21
CLN3-207ENST00000395653 EGFP01133 1207 aa22.6■■□□□ 1.21
CLN3-207ENST00000395653 FBXO43Q4G163 708 aa22.6■■□□□ 1.21
CLN3-207ENST00000395653 C2CD6Q53TS8 623 aa22.6■■□□□ 1.21
CLN3-207ENST00000395653 MAMSTRQ6ZN01 415 aa22.6■■□□□ 1.21
CLN3-207ENST00000395653 PHF13Q86YI8 300 aaPredicted RBP22.6■■□□□ 1.21
CLN3-207ENST00000395653 PNKPQ96T60 521 aa22.6■■□□□ 1.21
CLN3-207ENST00000395653 C11orf70Q9BRQ4 267 aa22.6■■□□□ 1.21
CLN3-207ENST00000395653 RRN3Q9NYV6 651 aa22.6■■□□□ 1.21
CLN3-207ENST00000395653 MUC6Q6W4X9 2439 aa22.6■■□□□ 1.21
CLN3-207ENST00000395653 NEDD8-MDP1E9PL57 170 aa22.59■■□□□ 1.21
CLN3-207ENST00000395653 CACNG3O60359 315 aa22.59■■□□□ 1.21
CLN3-207ENST00000395653 TYRP14679 529 aa22.59■■□□□ 1.21
CLN3-207ENST00000395653 MATKP42679 507 aa22.59■■□□□ 1.21
CLN3-207ENST00000395653 SLC6A11P48066 632 aa22.59■■□□□ 1.21
CLN3-207ENST00000395653 PITX1P78337 314 aaPredicted RBP22.59■■□□□ 1.21
CLN3-207ENST00000395653 ZBED6P86452 979 aa22.59■■□□□ 1.21
CLN3-207ENST00000395653 ADGRF1Q5T601 910 aa22.59■■□□□ 1.21
CLN3-207ENST00000395653 ARCQ7LC44 396 aa22.59■■□□□ 1.21
CLN3-207ENST00000395653 C1orf210Q8IVY1 113 aa22.59■■□□□ 1.21
CLN3-207ENST00000395653 SLC30A5Q8TAD4 765 aa22.59■■□□□ 1.21
CLN3-207ENST00000395653 OLIG1Q8TAK6 271 aa22.59■■□□□ 1.21
CLN3-207ENST00000395653 SYN2Q92777 582 aaPredicted RBP22.59■■□□□ 1.21
CLN3-207ENST00000395653 XPO6Q96QU8 1125 aaKnown RBP22.59■■□□□ 1.21
CLN3-207ENST00000395653 HAUS4Q9H6D7 363 aa22.59■■□□□ 1.21
CLN3-207ENST00000395653 FAM204AQ9H8W3 233 aa22.59■■□□□ 1.21
CLN3-207ENST00000395653 SPATA6Q9NWH7 488 aaPredicted RBP22.59■■□□□ 1.21
CLN3-207ENST00000395653 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP22.59■■□□□ 1.21
CLN3-207ENST00000395653 GOLGA8SH3BPF8 625 aa22.58■■□□□ 1.21
CLN3-207ENST00000395653 TULP3O75386 442 aa22.58■■□□□ 1.21
CLN3-207ENST00000395653 PENKP01210 267 aaPredicted RBP22.58■■□□□ 1.21
CLN3-207ENST00000395653 CYBBP04839 570 aa22.58■■□□□ 1.21
CLN3-207ENST00000395653 GYPCP04921 128 aa22.58■■□□□ 1.21
CLN3-207ENST00000395653 CALB1P05937 261 aa22.58■■□□□ 1.21
CLN3-207ENST00000395653 TNFAIP3P21580 790 aa22.58■■□□□ 1.21
CLN3-207ENST00000395653 GBP1P32455 592 aa22.58■■□□□ 1.21
CLN3-207ENST00000395653 SLC11A2P49281 568 aa22.58■■□□□ 1.21
CLN3-207ENST00000395653 GSCP56915 257 aaPredicted RBP22.58■■□□□ 1.21
CLN3-207ENST00000395653 KLHL30Q0D2K2 578 aa22.58■■□□□ 1.21
CLN3-207ENST00000395653 PTP4A2Q12974 167 aa22.58■■□□□ 1.21
CLN3-207ENST00000395653 MTAPQ13126 283 aa22.58■■□□□ 1.21
CLN3-207ENST00000395653 GAS6Q14393 721 aa22.58■■□□□ 1.21
CLN3-207ENST00000395653 PREPLQ4J6C6 727 aaPredicted RBP22.58■■□□□ 1.21
CLN3-207ENST00000395653 FYB2Q5VWT5 728 aa22.58■■□□□ 1.21
CLN3-207ENST00000395653 PPP1R2P3Q6NXS1 205 aa22.58■■□□□ 1.21
CLN3-207ENST00000395653 Q6ZS52 159 aa22.58■■□□□ 1.21
CLN3-207ENST00000395653 EZH1Q92800 747 aaPredicted RBP22.58■■□□□ 1.21
CLN3-207ENST00000395653 IRX2Q9BZI1 471 aaPredicted RBP22.58■■□□□ 1.21
CLN3-207ENST00000395653 SLTMQ9NWH9 1034 aaKnown RBP eCLIP22.58■■□□□ 1.21
CLN3-207ENST00000395653 DDIT4Q9NX09 232 aa22.58■■□□□ 1.21
CLN3-207ENST00000395653 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP22.58■■□□□ 1.21
CLN3-207ENST00000395653 ADAM22Q9P0K1 906 aa22.58■■□□□ 1.21
CLN3-207ENST00000395653 DEC1Q9P2X7 70 aa22.58■■□□□ 1.21
CLN3-207ENST00000395653 RAPGEFL1Q9UHV5 662 aa22.58■■□□□ 1.21
CLN3-207ENST00000395653 TMEM59LQ9UK28 342 aa22.58■■□□□ 1.21
CLN3-207ENST00000395653 STAP1Q9ULZ2 295 aa22.58■■□□□ 1.21
CLN3-207ENST00000395653 WDFY4Q6ZS81 3184 aa22.58■■□□□ 1.21
CLN3-207ENST00000395653 KIAA1549LQ6ZVL6 1849 aa22.58■■□□□ 1.2
CLN3-207ENST00000395653 A0A0A0MRY4 1105 aa22.57■■□□□ 1.2
CLN3-207ENST00000395653 ACSL4O60488 711 aa22.57■■□□□ 1.2
CLN3-207ENST00000395653 APOEP02649 317 aa22.57■■□□□ 1.2
CLN3-207ENST00000395653 PTPN5P54829 565 aa22.57■■□□□ 1.2
CLN3-207ENST00000395653 TCF15Q12870 199 aa22.57■■□□□ 1.2
CLN3-207ENST00000395653 ANGPT1Q15389 498 aa22.57■■□□□ 1.2
CLN3-207ENST00000395653 SPECC1LQ69YQ0 1117 aa22.57■■□□□ 1.2
CLN3-207ENST00000395653 SARM1Q6SZW1 724 aa22.57■■□□□ 1.2
CLN3-207ENST00000395653 MON1BQ7L1V2 547 aa22.57■■□□□ 1.2
CLN3-207ENST00000395653 PHTF2Q8N3S3 785 aa22.57■■□□□ 1.2
CLN3-207ENST00000395653 SPEM1Q8N4L4 309 aa22.57■■□□□ 1.2
CLN3-207ENST00000395653 NAT16Q8N8M0 369 aa22.57■■□□□ 1.2
CLN3-207ENST00000395653 CCDC26Q8TAB7 109 aa22.57■■□□□ 1.2
CLN3-207ENST00000395653 NPY6RQ99463 290 aa22.57■■□□□ 1.2
CLN3-207ENST00000395653 ARHGEF4Q9NR80 690 aa22.57■■□□□ 1.2
CLN3-207ENST00000395653 LUC7L2Q9Y383 392 aaKnown RBP22.57■■□□□ 1.2
CLN3-207ENST00000395653 MYOFQ9NZM1 2061 aa22.57■■□□□ 1.2
CLN3-207ENST00000395653 GFRA2O00451 464 aa22.57■■□□□ 1.2
CLN3-207ENST00000395653 LAMTOR5O43504 91 aa22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms