RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 DENND2CQ68D51 928 aa18.89■□□□□ 0.61
CCDC88C-203ENST00000389856 CEP128Q6ZU80 1094 aa18.89■□□□□ 0.61
CCDC88C-203ENST00000389856 HFE2Q6ZVN8 426 aa18.89■□□□□ 0.61
CCDC88C-203ENST00000389856 OTOP2Q7RTS6 562 aa18.89■□□□□ 0.61
CCDC88C-203ENST00000389856 DDX53Q86TM3 631 aaKnown RBP18.89■□□□□ 0.61
CCDC88C-203ENST00000389856 SH2D3CQ8N5H7 860 aa18.89■□□□□ 0.61
CCDC88C-203ENST00000389856 BCL7CQ8WUZ0 217 aaPredicted RBP18.89■□□□□ 0.61
CCDC88C-203ENST00000389856 PGM2Q96G03 612 aa18.89■□□□□ 0.61
CCDC88C-203ENST00000389856 B3GALT6Q96L58 329 aa18.89■□□□□ 0.61
CCDC88C-203ENST00000389856 PGLYRP2Q96PD5 576 aa18.89■□□□□ 0.61
CCDC88C-203ENST00000389856 HERPUD2Q9BSE4 406 aa18.89■□□□□ 0.61
CCDC88C-203ENST00000389856 DDIT4Q9NX09 232 aa18.89■□□□□ 0.61
CCDC88C-203ENST00000389856 FZD10Q9ULW2 581 aa18.89■□□□□ 0.61
CCDC88C-203ENST00000389856 MAFFQ9ULX9 164 aa18.89■□□□□ 0.61
CCDC88C-203ENST00000389856 ZNF148Q9UQR1 794 aa18.89■□□□□ 0.61
CCDC88C-203ENST00000389856 ATP8A1Q9Y2Q0 1164 aa18.89■□□□□ 0.61
CCDC88C-203ENST00000389856 MRPL42Q9Y6G3 142 aaKnown RBP18.89■□□□□ 0.61
CCDC88C-203ENST00000389856 COL4A6Q14031 1691 aa18.88■□□□□ 0.61
CCDC88C-203ENST00000389856 EBAG9O00559 213 aa18.88■□□□□ 0.61
CCDC88C-203ENST00000389856 ITGAVP06756 1048 aa18.88■□□□□ 0.61
CCDC88C-203ENST00000389856 VCPP55072 806 aaKnown RBP18.88■□□□□ 0.61
CCDC88C-203ENST00000389856 DSG1Q02413 1049 aa18.88■□□□□ 0.61
CCDC88C-203ENST00000389856 ANKRD20A8PQ5CZ79 823 aa18.88■□□□□ 0.61
CCDC88C-203ENST00000389856 PPP6R3Q5H9R7 873 aaPredicted RBP18.88■□□□□ 0.61
CCDC88C-203ENST00000389856 SYPL2Q5VXT5 272 aa18.88■□□□□ 0.61
CCDC88C-203ENST00000389856 DENND5BQ6ZUT9 1274 aa18.88■□□□□ 0.61
CCDC88C-203ENST00000389856 B4GALNT4Q76KP1 1039 aa18.88■□□□□ 0.61
CCDC88C-203ENST00000389856 TRMT10CQ7L0Y3 403 aaKnown RBP18.88■□□□□ 0.61
CCDC88C-203ENST00000389856 BZW1Q7L1Q6 419 aaKnown RBP18.88■□□□□ 0.61
CCDC88C-203ENST00000389856 FAM131BQ86XD5 332 aa18.88■□□□□ 0.61
CCDC88C-203ENST00000389856 FIBCD1Q8N539 461 aa18.88■□□□□ 0.61
CCDC88C-203ENST00000389856 FBXO25Q8TCJ0 367 aa18.88■□□□□ 0.61
CCDC88C-203ENST00000389856 BCAS4Q8TDM0 211 aa18.88■□□□□ 0.61
CCDC88C-203ENST00000389856 ATG4AQ8WYN0 398 aa18.88■□□□□ 0.61
CCDC88C-203ENST00000389856 P3H4Q92791 437 aa18.88■□□□□ 0.61
CCDC88C-203ENST00000389856 HAUS1Q96CS2 278 aa18.88■□□□□ 0.61
CCDC88C-203ENST00000389856 FAF2Q96CS3 445 aa18.88■□□□□ 0.61
CCDC88C-203ENST00000389856 SEPT5Q99719 369 aaPredicted RBP18.88■□□□□ 0.61
CCDC88C-203ENST00000389856 ZBED2Q9BTP6 218 aa18.88■□□□□ 0.61
CCDC88C-203ENST00000389856 HTATIP2Q9BUP3 242 aa18.88■□□□□ 0.61
CCDC88C-203ENST00000389856 EPN3Q9H201 632 aa18.88■□□□□ 0.61
CCDC88C-203ENST00000389856 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.88■□□□□ 0.61
CCDC88C-203ENST00000389856 R3HDM2Q9Y2K5 976 aaKnown RBP18.88■□□□□ 0.61
CCDC88C-203ENST00000389856 MYO16Q9Y6X6 1858 aa18.88■□□□□ 0.61
CCDC88C-203ENST00000389856 FYNP06241 537 aa18.87■□□□□ 0.61
CCDC88C-203ENST00000389856 TFE3P19532 575 aaPredicted RBP18.87■□□□□ 0.61
CCDC88C-203ENST00000389856 YWHAQP27348 245 aa18.87■□□□□ 0.61
CCDC88C-203ENST00000389856 L1CAMP32004 1257 aa18.87■□□□□ 0.61
CCDC88C-203ENST00000389856 KCNJ1P48048 391 aa18.87■□□□□ 0.61
CCDC88C-203ENST00000389856 RABGGTBP53611 331 aa18.87■□□□□ 0.61
CCDC88C-203ENST00000389856 DYNLT1P63172 113 aa18.87■□□□□ 0.61
CCDC88C-203ENST00000389856 ADCY2Q08462 1091 aa18.87■□□□□ 0.61
CCDC88C-203ENST00000389856 SCAPQ12770 1279 aa18.87■□□□□ 0.61
CCDC88C-203ENST00000389856 IFRD2Q12894 506 aaPredicted RBP18.87■□□□□ 0.61
CCDC88C-203ENST00000389856 KRT71Q3SY84 523 aa18.87■□□□□ 0.61
CCDC88C-203ENST00000389856 PRSS55Q6UWB4 352 aaPredicted RBP18.87■□□□□ 0.61
CCDC88C-203ENST00000389856 BHLHA9Q7RTU4 235 aa18.87■□□□□ 0.61
CCDC88C-203ENST00000389856 ANKS1BQ7Z6G8 1248 aa18.87■□□□□ 0.61
CCDC88C-203ENST00000389856 SRLQ86TD4 932 aa18.87■□□□□ 0.61
CCDC88C-203ENST00000389856 ATAD1Q8NBU5 361 aa18.87■□□□□ 0.61
CCDC88C-203ENST00000389856 SCAMP5Q8TAC9 235 aa18.87■□□□□ 0.61
CCDC88C-203ENST00000389856 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.87■□□□□ 0.61
CCDC88C-203ENST00000389856 AFF4Q9UHB7 1163 aaKnown RBP18.87■□□□□ 0.61
CCDC88C-203ENST00000389856 ASIC3Q9UHC3 531 aa18.87■□□□□ 0.61
CCDC88C-203ENST00000389856 INSL6Q9Y581 213 aa18.87■□□□□ 0.61
CCDC88C-203ENST00000389856 ATXN2Q99700 1313 aaKnown RBP18.87■□□□□ 0.61
CCDC88C-203ENST00000389856 COL4A4P53420 1690 aaPredicted RBP18.87■□□□□ 0.61
CCDC88C-203ENST00000389856 PLXNA3P51805 1871 aa18.87■□□□□ 0.61
CCDC88C-203ENST00000389856 SYNJ2BP-COX16A0A087WUM0 186 aa18.86■□□□□ 0.61
CCDC88C-203ENST00000389856 GJB5O95377 273 aa18.86■□□□□ 0.61
CCDC88C-203ENST00000389856 CD48P09326 243 aa18.86■□□□□ 0.61
CCDC88C-203ENST00000389856 ATF2P15336 505 aa18.86■□□□□ 0.61
CCDC88C-203ENST00000389856 LSP1P33241 339 aa18.86■□□□□ 0.61
CCDC88C-203ENST00000389856 NR2C2P49116 596 aa18.86■□□□□ 0.61
CCDC88C-203ENST00000389856 PPP2R2AP63151 447 aa18.86■□□□□ 0.61
CCDC88C-203ENST00000389856 ROR1Q01973 937 aa18.86■□□□□ 0.61
CCDC88C-203ENST00000389856 DDR2Q16832 855 aa18.86■□□□□ 0.61
CCDC88C-203ENST00000389856 ZC3H12AQ5D1E8 599 aaKnown RBP18.86■□□□□ 0.61
CCDC88C-203ENST00000389856 BRMS1LQ5PSV4 323 aa18.86■□□□□ 0.61
CCDC88C-203ENST00000389856 C6orf118Q5T5N4 469 aa18.86■□□□□ 0.61
CCDC88C-203ENST00000389856 RNF19BQ6ZMZ0 732 aa18.86■□□□□ 0.61
CCDC88C-203ENST00000389856 TAS1R1Q7RTX1 841 aa18.86■□□□□ 0.61
CCDC88C-203ENST00000389856 ACTL9Q8TC94 416 aa18.86■□□□□ 0.61
CCDC88C-203ENST00000389856 PHOSPHO2Q8TCD6 241 aa18.86■□□□□ 0.61
CCDC88C-203ENST00000389856 EDEM1Q92611 657 aa18.86■□□□□ 0.61
CCDC88C-203ENST00000389856 BADQ92934 168 aa18.86■□□□□ 0.61
CCDC88C-203ENST00000389856 RNF34Q969K3 372 aa18.86■□□□□ 0.61
CCDC88C-203ENST00000389856 TLCD1Q96CP7 247 aa18.86■□□□□ 0.61
CCDC88C-203ENST00000389856 SERPINB11Q96P15 392 aa18.86■□□□□ 0.61
CCDC88C-203ENST00000389856 CDK5RAP1Q96SZ6 601 aaKnown RBP18.86■□□□□ 0.61
CCDC88C-203ENST00000389856 FOXP3Q9BZS1 431 aa18.86■□□□□ 0.61
CCDC88C-203ENST00000389856 ROPN1BQ9BZX4 212 aaPredicted RBP18.86■□□□□ 0.61
CCDC88C-203ENST00000389856 SMOC2Q9H3U7 446 aa18.86■□□□□ 0.61
CCDC88C-203ENST00000389856 WDCPQ9H6R7 721 aa18.86■□□□□ 0.61
CCDC88C-203ENST00000389856 ROPN1Q9HAT0 212 aaPredicted RBP18.86■□□□□ 0.61
CCDC88C-203ENST00000389856 OLA1Q9NTK5 396 aaKnown RBP18.86■□□□□ 0.61
CCDC88C-203ENST00000389856 PIGVQ9NUD9 493 aa18.86■□□□□ 0.61
CCDC88C-203ENST00000389856 IL37Q9NZH6 218 aa18.86■□□□□ 0.61
CCDC88C-203ENST00000389856 COX16Q9P0S2 106 aa18.86■□□□□ 0.61
CCDC88C-203ENST00000389856 RSPH14Q9UHP6 348 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms