RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 F11P03951 625 aa10.63□□□□□ -0.71
VPS53-202ENST00000389040 GOLGA6DP0CG33 693 aa10.63□□□□□ -0.71
VPS53-202ENST00000389040 BMP1P13497 986 aa10.63□□□□□ -0.71
VPS53-202ENST00000389040 BRD2P25440 801 aaKnown RBP10.63□□□□□ -0.71
VPS53-202ENST00000389040 SSTR3P32745 418 aaPredicted RBP10.63□□□□□ -0.71
VPS53-202ENST00000389040 LMAN1P49257 510 aa10.63□□□□□ -0.71
VPS53-202ENST00000389040 TFF2Q03403 129 aa10.63□□□□□ -0.71
VPS53-202ENST00000389040 PDE4CQ08493 712 aa10.63□□□□□ -0.71
VPS53-202ENST00000389040 MAMLD1Q13495 774 aa10.63□□□□□ -0.71
VPS53-202ENST00000389040 CYP1B1Q16678 543 aa10.63□□□□□ -0.71
VPS53-202ENST00000389040 CCDC142Q17RM4 750 aa10.63□□□□□ -0.71
VPS53-202ENST00000389040 PM20D1Q6GTS8 502 aa10.63□□□□□ -0.71
VPS53-202ENST00000389040 MMS22LQ6ZRQ5 1243 aa10.63□□□□□ -0.71
VPS53-202ENST00000389040 TADA2BQ86TJ2 420 aa10.63□□□□□ -0.71
VPS53-202ENST00000389040 TMEM110Q86TL2 294 aa10.63□□□□□ -0.71
VPS53-202ENST00000389040 JAMLQ86YT9 394 aa10.63□□□□□ -0.71
VPS53-202ENST00000389040 ZDHHC17Q8IUH5 632 aa10.63□□□□□ -0.71
VPS53-202ENST00000389040 ZDHHC14Q8IZN3 488 aa10.63□□□□□ -0.71
VPS53-202ENST00000389040 IRGQQ8WZA9 623 aa10.63□□□□□ -0.71
VPS53-202ENST00000389040 MRPS31Q92665 395 aaKnown RBP10.63□□□□□ -0.71
VPS53-202ENST00000389040 C18orf8Q96DM3 657 aa10.63□□□□□ -0.71
VPS53-202ENST00000389040 ERP44Q9BS26 406 aa10.63□□□□□ -0.71
VPS53-202ENST00000389040 DPH5Q9H2P9 285 aa10.63□□□□□ -0.71
VPS53-202ENST00000389040 POMKQ9H5K3 350 aa10.63□□□□□ -0.71
VPS53-202ENST00000389040 TLR8Q9NR97 1041 aaKnown RBP10.63□□□□□ -0.71
VPS53-202ENST00000389040 TMEM30AQ9NV96 361 aa10.63□□□□□ -0.71
VPS53-202ENST00000389040 GOLGA6AQ9NYA3 693 aa10.63□□□□□ -0.71
VPS53-202ENST00000389040 PCYOX1Q9UHG3 505 aa10.63□□□□□ -0.71
VPS53-202ENST00000389040 RASAL2Q9UJF2 1139 aa10.63□□□□□ -0.71
VPS53-202ENST00000389040 SCINQ9Y6U3 715 aa10.63□□□□□ -0.71
VPS53-202ENST00000389040 XIRP2A4UGR9 3374 aa10.63□□□□□ -0.71
VPS53-202ENST00000389040 STK25O00506 426 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 SOAT2O75908 522 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 BEST1O76090 585 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 ZDHHC11BP0C7U3 371 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 GABRR2P28476 465 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 PTGIRP43119 386 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 CACNA2D1P54289 1103 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 PTP4A2Q12974 167 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 KCTD19Q17RG1 926 aaPredicted RBP10.62□□□□□ -0.71
VPS53-202ENST00000389040 TJAP1Q5JTD0 557 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 DUPD1Q68J44 220 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 PLEKHA7Q6IQ23 1121 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 KLHDC10Q6PID8 442 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 GAREM2Q75VX8 874 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 BEND5Q7L4P6 421 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.62□□□□□ -0.71
VPS53-202ENST00000389040 C12orf50Q8NA57 414 aaPredicted RBP10.62□□□□□ -0.71
VPS53-202ENST00000389040 MAGOHBQ96A72 148 aaKnown RBP10.62□□□□□ -0.71
VPS53-202ENST00000389040 SLC4A5Q9BY07 1137 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 TASP1Q9H6P5 420 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 TRPV4Q9HBA0 871 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 IL21Q9HBE4 155 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 CLIC5Q9NZA1 410 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.62□□□□□ -0.71
VPS53-202ENST00000389040 COL6A3P12111 3177 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 TCRBV7S2A1N4TA0A589 114 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 ERICH4A6NGS2 130 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 ZBED1O96006 694 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 MYL4P12829 197 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 LAMP2P13473 410 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 MMP8P22894 467 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 HSD17B3P37058 310 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 SIX1Q15475 284 aaPredicted RBP10.62□□□□□ -0.71
VPS53-202ENST00000389040 TTC27Q6P3X3 843 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 CCDC137Q6PK04 289 aaKnown RBP10.62□□□□□ -0.71
VPS53-202ENST00000389040 MTSS1LQ765P7 747 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 SIX6OS1Q8N1H7 587 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 TDRD5Q8NAT2 981 aaKnown RBP10.62□□□□□ -0.71
VPS53-202ENST00000389040 C1orf131Q8NDD1 294 aaKnown RBP10.62□□□□□ -0.71
VPS53-202ENST00000389040 FAM76AQ8TAV0 307 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 FGF13Q92913 245 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 FBXO32Q969P5 355 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 RUNDC3BQ96NL0 473 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 APOL5Q9BWW9 433 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 TRIM31Q9BZY9 425 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 ATXN3LQ9H3M9 355 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 PARVAQ9NVD7 372 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 HCFC1R1Q9NWW0 138 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 OBP2AQ9NY56 170 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 MAGED2Q9UNF1 606 aaPredicted RBP10.62□□□□□ -0.71
VPS53-202ENST00000389040 ATG2AQ2TAZ0 1938 aa10.62□□□□□ -0.71
VPS53-202ENST00000389040 EYSQ5T1H1 3165 aa10.61□□□□□ -0.71
VPS53-202ENST00000389040 REV3LO60673 3130 aa10.61□□□□□ -0.71
VPS53-202ENST00000389040 ZNF840PA6NDX5 716 aa10.61□□□□□ -0.71
VPS53-202ENST00000389040 C19orf67A6NJJ6 358 aa10.61□□□□□ -0.71
VPS53-202ENST00000389040 LOC730098B7Z3J9 87 aa10.61□□□□□ -0.71
VPS53-202ENST00000389040 PSTPIP1O43586 416 aa10.61□□□□□ -0.71
VPS53-202ENST00000389040 KRT14P02533 472 aa10.61□□□□□ -0.71
VPS53-202ENST00000389040 CALB1P05937 261 aa10.61□□□□□ -0.71
VPS53-202ENST00000389040 RARAP10276 462 aa10.61□□□□□ -0.71
VPS53-202ENST00000389040 GBP1P32455 592 aa10.61□□□□□ -0.71
VPS53-202ENST00000389040 SCNN1AP37088 669 aa10.61□□□□□ -0.71
VPS53-202ENST00000389040 FNTAP49354 379 aa10.61□□□□□ -0.71
VPS53-202ENST00000389040 GPR15P49685 360 aa10.61□□□□□ -0.71
VPS53-202ENST00000389040 TKTL1P51854 596 aa10.61□□□□□ -0.71
VPS53-202ENST00000389040 DRG2P55039 364 aaKnown RBP10.61□□□□□ -0.71
VPS53-202ENST00000389040 TAF10Q12962 218 aa10.61□□□□□ -0.71
VPS53-202ENST00000389040 MTMR3Q13615 1198 aa10.61□□□□□ -0.71
VPS53-202ENST00000389040 TTMPQ5BVD1 217 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms