RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 CPXM1Q96SM3 734 aa11.47□□□□□ -0.57
CCDC40-203ENST00000374877 OCEL1Q9H607 264 aa11.47□□□□□ -0.57
CCDC40-203ENST00000374877 IL1RAPL1Q9NZN1 696 aa11.47□□□□□ -0.57
CCDC40-203ENST00000374877 DNAJC16Q9Y2G8 782 aa11.47□□□□□ -0.57
CCDC40-203ENST00000374877 A6NJR5 290 aa11.46□□□□□ -0.57
CCDC40-203ENST00000374877 PYGLP06737 847 aa11.46□□□□□ -0.57
CCDC40-203ENST00000374877 ABCD1P33897 745 aa11.46□□□□□ -0.57
CCDC40-203ENST00000374877 RAP1GAPP47736 663 aa11.46□□□□□ -0.57
CCDC40-203ENST00000374877 TRIP10Q15642 601 aa11.46□□□□□ -0.57
CCDC40-203ENST00000374877 ZNF699Q32M78 642 aa11.46□□□□□ -0.57
CCDC40-203ENST00000374877 TRMT10BQ6PF06 316 aaKnown RBP11.46□□□□□ -0.57
CCDC40-203ENST00000374877 MAMDC4Q6UXC1 1216 aa11.46□□□□□ -0.57
CCDC40-203ENST00000374877 DPH6Q7L8W6 267 aa11.46□□□□□ -0.57
CCDC40-203ENST00000374877 STKLD1Q8NE28 680 aa11.46□□□□□ -0.57
CCDC40-203ENST00000374877 RSAD1Q9HA92 442 aa11.46□□□□□ -0.57
CCDC40-203ENST00000374877 TTLL13PA6NNM8 815 aa11.46□□□□□ -0.58
CCDC40-203ENST00000374877 CHADO15335 359 aa11.46□□□□□ -0.58
CCDC40-203ENST00000374877 PROCP04070 461 aa11.46□□□□□ -0.58
CCDC40-203ENST00000374877 UBA1P22314 1058 aaKnown RBP11.46□□□□□ -0.58
CCDC40-203ENST00000374877 CPOXP36551 454 aa11.46□□□□□ -0.58
CCDC40-203ENST00000374877 YWHAEP62258 255 aaKnown RBP11.46□□□□□ -0.58
CCDC40-203ENST00000374877 IRF5Q13568 498 aa11.46□□□□□ -0.58
CCDC40-203ENST00000374877 NOMO1Q15155 1222 aa11.46□□□□□ -0.58
CCDC40-203ENST00000374877 CDO1Q16878 200 aa11.46□□□□□ -0.58
CCDC40-203ENST00000374877 MMEL1Q495T6 779 aa11.46□□□□□ -0.58
CCDC40-203ENST00000374877 XKR3Q5GH77 459 aa11.46□□□□□ -0.58
CCDC40-203ENST00000374877 C16orf46Q6P387 395 aa11.46□□□□□ -0.58
CCDC40-203ENST00000374877 ISLR2Q6UXK2 745 aa11.46□□□□□ -0.58
CCDC40-203ENST00000374877 ABHD15Q6UXT9 468 aa11.46□□□□□ -0.58
CCDC40-203ENST00000374877 RSPH3Q86UC2 560 aa11.46□□□□□ -0.58
CCDC40-203ENST00000374877 NME8Q8N427 588 aa11.46□□□□□ -0.58
CCDC40-203ENST00000374877 GDPD5Q8WTR4 605 aa11.46□□□□□ -0.58
CCDC40-203ENST00000374877 CCDC28BQ9BUN5 200 aa11.46□□□□□ -0.58
CCDC40-203ENST00000374877 POPDC2Q9HBU9 364 aa11.46□□□□□ -0.58
CCDC40-203ENST00000374877 VTA1Q9NP79 307 aa11.46□□□□□ -0.58
CCDC40-203ENST00000374877 SDR42E2A6NKP2 422 aa11.46□□□□□ -0.58
CCDC40-203ENST00000374877 PIK3R2O00459 728 aa11.46□□□□□ -0.58
CCDC40-203ENST00000374877 STK10O94804 968 aaKnown RBP11.46□□□□□ -0.58
CCDC40-203ENST00000374877 C1QAP02745 245 aa11.46□□□□□ -0.58
CCDC40-203ENST00000374877 COPAP53621 1224 aa11.46□□□□□ -0.58
CCDC40-203ENST00000374877 RPL10AP62906 217 aaKnown RBP11.46□□□□□ -0.58
CCDC40-203ENST00000374877 DLG1Q12959 904 aa11.46□□□□□ -0.58
CCDC40-203ENST00000374877 TAZQ16635 292 aa11.46□□□□□ -0.58
CCDC40-203ENST00000374877 GRAMD1BQ3KR37 738 aa11.46□□□□□ -0.58
CCDC40-203ENST00000374877 AAGABQ6PD74 315 aa11.46□□□□□ -0.58
CCDC40-203ENST00000374877 CMASQ8NFW8 434 aaPredicted RBP11.46□□□□□ -0.58
CCDC40-203ENST00000374877 KLHL4Q9C0H6 718 aa11.46□□□□□ -0.58
CCDC40-203ENST00000374877 C1orf21Q9H246 121 aa11.46□□□□□ -0.58
CCDC40-203ENST00000374877 THAP1Q9NVV9 213 aa11.46□□□□□ -0.58
CCDC40-203ENST00000374877 PAK5Q9P286 719 aa11.46□□□□□ -0.58
CCDC40-203ENST00000374877 ZNF180Q9UJW8 692 aa11.46□□□□□ -0.58
CCDC40-203ENST00000374877 ADAMTS6Q9UKP5 1117 aa11.46□□□□□ -0.58
CCDC40-203ENST00000374877 PCDHGC3Q9UN70 934 aa11.46□□□□□ -0.58
CCDC40-203ENST00000374877 APOBEC2Q9Y235 224 aaKnown RBP11.46□□□□□ -0.58
CCDC40-203ENST00000374877 PLXNB2O15031 1838 aa11.45□□□□□ -0.58
CCDC40-203ENST00000374877 LOC100653049A0A140TA62 436 aa11.45□□□□□ -0.58
CCDC40-203ENST00000374877 CREB3O43889 395 aa11.45□□□□□ -0.58
CCDC40-203ENST00000374877 KRT34O76011 436 aa11.45□□□□□ -0.58
CCDC40-203ENST00000374877 TRUB2O95900 331 aaKnown RBP11.45□□□□□ -0.58
CCDC40-203ENST00000374877 ZBED1O96006 694 aa11.45□□□□□ -0.58
CCDC40-203ENST00000374877 ALDH1A1P00352 501 aa11.45□□□□□ -0.58
CCDC40-203ENST00000374877 APOEP02649 317 aa11.45□□□□□ -0.58
CCDC40-203ENST00000374877 SUPT20HL2P0C7V6 817 aa11.45□□□□□ -0.58
CCDC40-203ENST00000374877 UQCRBP14927 111 aa11.45□□□□□ -0.58
CCDC40-203ENST00000374877 NAMPTP43490 491 aa11.45□□□□□ -0.58
CCDC40-203ENST00000374877 WASHC5Q12768 1159 aa11.45□□□□□ -0.58
CCDC40-203ENST00000374877 FASTKD1Q53R41 847 aaKnown RBP11.45□□□□□ -0.58
CCDC40-203ENST00000374877 TCHHL1Q5QJ38 904 aaPredicted RBP11.45□□□□□ -0.58
CCDC40-203ENST00000374877 SH3PXD2AQ5TCZ1 1133 aa11.45□□□□□ -0.58
CCDC40-203ENST00000374877 RNF111Q6ZNA4 994 aa11.45□□□□□ -0.58
CCDC40-203ENST00000374877 BRSK2Q8IWQ3 736 aa11.45□□□□□ -0.58
CCDC40-203ENST00000374877 SLC7A3Q8WY07 619 aa11.45□□□□□ -0.58
CCDC40-203ENST00000374877 NMD3Q96D46 503 aaKnown RBP11.45□□□□□ -0.58
CCDC40-203ENST00000374877 PNPLA8Q9NP80 782 aa11.45□□□□□ -0.58
CCDC40-203ENST00000374877 CPA4Q9UI42 421 aa11.45□□□□□ -0.58
CCDC40-203ENST00000374877 COMMD3-BMI1R4GMX3 469 aa11.45□□□□□ -0.58
CCDC40-203ENST00000374877 RBM47A0AV96 593 aaKnown RBP11.45□□□□□ -0.58
CCDC40-203ENST00000374877 ITM2AO43736 263 aa11.45□□□□□ -0.58
CCDC40-203ENST00000374877 SNNO75324 88 aaPredicted RBP11.45□□□□□ -0.58
CCDC40-203ENST00000374877 FARP2O94887 1054 aaPredicted RBP11.45□□□□□ -0.58
CCDC40-203ENST00000374877 ERBB2P04626 1255 aa11.45□□□□□ -0.58
CCDC40-203ENST00000374877 KRT19P08727 400 aa11.45□□□□□ -0.58
CCDC40-203ENST00000374877 AOC1P19801 751 aa11.45□□□□□ -0.58
CCDC40-203ENST00000374877 RBL1P28749 1068 aa11.45□□□□□ -0.58
CCDC40-203ENST00000374877 CDH5P33151 784 aaPredicted RBP11.45□□□□□ -0.58
CCDC40-203ENST00000374877 OSTNP61366 133 aa11.45□□□□□ -0.58
CCDC40-203ENST00000374877 SP2Q02086 613 aa11.45□□□□□ -0.58
CCDC40-203ENST00000374877 PEX6Q13608 980 aa11.45□□□□□ -0.58
CCDC40-203ENST00000374877 SMAD1Q15797 465 aaKnown RBP11.45□□□□□ -0.58
CCDC40-203ENST00000374877 RAB6CQ53S08 254 aa11.45□□□□□ -0.58
CCDC40-203ENST00000374877 RABGAP1LQ5R372 815 aa11.45□□□□□ -0.58
CCDC40-203ENST00000374877 METTL7BQ6UX53 244 aa11.45□□□□□ -0.58
CCDC40-203ENST00000374877 UNC5AQ6ZN44 842 aa11.45□□□□□ -0.58
CCDC40-203ENST00000374877 ARMCX2Q7L311 632 aa11.45□□□□□ -0.58
CCDC40-203ENST00000374877 SATL1Q86VE3 508 aa11.45□□□□□ -0.58
CCDC40-203ENST00000374877 WDR49Q8IV35 697 aa11.45□□□□□ -0.58
CCDC40-203ENST00000374877 FAM81AQ8TBF8 368 aa11.45□□□□□ -0.58
CCDC40-203ENST00000374877 FNIP1Q8TF40 1166 aa11.45□□□□□ -0.58
CCDC40-203ENST00000374877 NAT14Q8WUY8 206 aa11.45□□□□□ -0.58
CCDC40-203ENST00000374877 DEPDC1BQ8WUY9 529 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms