RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 GTF2IRD2Q86UP8 949 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 ARHGEF39Q8N4T4 335 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 TC2NQ8N9U0 490 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 VWCEQ96DN2 955 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 CLIP3Q96DZ5 547 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 ORAI3Q9BRQ5 295 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 MENTQ9BUN1 341 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 LSM14BQ9BX40 385 aaKnown RBP3.8□□□□□ -1.8
MCF2-202ENST00000370573 TTYH3Q9C0H2 523 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 GANQ9H2C0 597 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 NXF3Q9H4D5 531 aaKnown RBP3.8□□□□□ -1.8
MCF2-202ENST00000370573 IMPACTQ9P2X3 320 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 CGGBP1Q9UFW8 167 aaPredicted RBP3.8□□□□□ -1.8
MCF2-202ENST00000370573 AJAP1Q9UKB5 411 aaPredicted RBP3.8□□□□□ -1.8
MCF2-202ENST00000370573 PIN4Q9Y237 131 aaKnown RBP3.8□□□□□ -1.8
MCF2-202ENST00000370573 HES2Q9Y543 173 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 ANK1P16157 1881 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 GTPBP10A4D1E9 387 aaKnown RBP3.8□□□□□ -1.8
MCF2-202ENST00000370573 A6NNZ2 444 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 IQCJ-SCHIP1C9J366 451 aaPredicted RBP3.8□□□□□ -1.8
MCF2-202ENST00000370573 CBX4O00257 560 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 ARNTLO00327 626 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 PMM2O15305 246 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 NBNO60934 754 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 RPLP2P05387 115 aaKnown RBP3.8□□□□□ -1.8
MCF2-202ENST00000370573 NAT2P11245 290 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 EN2P19622 333 aaPredicted RBP3.8□□□□□ -1.8
MCF2-202ENST00000370573 AKAP5P24588 427 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 GTF2H1P32780 548 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 IL2P60568 153 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 MYL7Q01449 175 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 NCBP1Q09161 790 aaKnown RBP3.8□□□□□ -1.8
MCF2-202ENST00000370573 EXOC3L4Q17RC7 722 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 DCAF4L1Q3SXM0 396 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 ZACNQ401N2 412 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 KLHDC7AQ5VTJ3 777 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 ALKAL1Q6UXT8 129 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 GBP6Q6ZN66 633 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 UBE2Q1Q7Z7E8 422 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 EFCAB13Q8IY85 973 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 POU5F2Q8N7G0 328 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 CLRN3Q8NCR9 226 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 C1orf162Q8NEQ5 155 aaPredicted RBP3.8□□□□□ -1.8
MCF2-202ENST00000370573 TAS1R2Q8TE23 839 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 LINC01599Q8WXQ3 324 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 PPM1EQ8WY54 764 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 ZMAT2Q96NC0 199 aaKnown RBP3.8□□□□□ -1.8
MCF2-202ENST00000370573 TOX2Q96NM4 488 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 ACAP3Q96P50 834 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 CGRRF1Q99675 332 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 SLC13A1Q9BZW2 595 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 INTS2Q9H0H0 1204 aaKnown RBP3.8□□□□□ -1.8
MCF2-202ENST00000370573 C11orf49Q9H6J7 331 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 RPF1Q9H9Y2 349 aaKnown RBP3.8□□□□□ -1.8
MCF2-202ENST00000370573 TMEM8AQ9HCN3 771 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 GP6Q9HCN6 339 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 FAM207AQ9NSI2 230 aaPredicted RBP3.8□□□□□ -1.8
MCF2-202ENST00000370573 H2AFY2Q9P0M6 372 aaPredicted RBP3.8□□□□□ -1.8
MCF2-202ENST00000370573 EBF1Q9UH73 591 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 PUF60Q9UHX1 559 aaKnown RBP3.8□□□□□ -1.8
MCF2-202ENST00000370573 CAPN11Q9UMQ6 739 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 COQ4Q9Y3A0 265 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP3.8□□□□□ -1.8
MCF2-202ENST00000370573 SQORQ9Y6N5 450 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 MROH7Q68CQ1 1323 aa3.8□□□□□ -1.8
MCF2-202ENST00000370573 TRIP11Q15643 1979 aa3.79□□□□□ -1.8
MCF2-202ENST00000370573 TET1Q8NFU7 2136 aa3.79□□□□□ -1.8
MCF2-202ENST00000370573 AKR1B15C9JRZ8 316 aaPredicted RBP3.79□□□□□ -1.8
MCF2-202ENST00000370573 P4HA2O15460 535 aa3.79□□□□□ -1.8
MCF2-202ENST00000370573 TCEA3O75764 348 aa3.79□□□□□ -1.8
MCF2-202ENST00000370573 SNUPNO95149 360 aaKnown RBP3.79□□□□□ -1.8
MCF2-202ENST00000370573 IL18RAPO95256 599 aa3.79□□□□□ -1.8
MCF2-202ENST00000370573 HLA-DRAP01903 254 aa3.79□□□□□ -1.8
MCF2-202ENST00000370573 PTMAP06454 111 aaKnown RBP3.79□□□□□ -1.8
MCF2-202ENST00000370573 GLI1P08151 1106 aa3.79□□□□□ -1.8
MCF2-202ENST00000370573 TNNI1P19237 187 aa3.79□□□□□ -1.8
MCF2-202ENST00000370573 CYP2C18P33260 490 aa3.79□□□□□ -1.8
MCF2-202ENST00000370573 MXI1P50539 228 aa3.79□□□□□ -1.8
MCF2-202ENST00000370573 POLR2FP61218 127 aaKnown RBP3.79□□□□□ -1.8
MCF2-202ENST00000370573 POU5F1Q01860 360 aaKnown RBP3.79□□□□□ -1.8
MCF2-202ENST00000370573 BFSP2Q13515 415 aa3.79□□□□□ -1.8
MCF2-202ENST00000370573 ZBTB6Q15916 424 aa3.79□□□□□ -1.8
MCF2-202ENST00000370573 ATP13A4Q4VNC1 1196 aa3.79□□□□□ -1.8
MCF2-202ENST00000370573 ARHGAP29Q52LW3 1261 aa3.79□□□□□ -1.8
MCF2-202ENST00000370573 ANKRD39Q53RE8 183 aa3.79□□□□□ -1.8
MCF2-202ENST00000370573 FIGNQ5HY92 759 aa3.79□□□□□ -1.8
MCF2-202ENST00000370573 E4F1Q66K89 784 aaPredicted RBP3.79□□□□□ -1.8
MCF2-202ENST00000370573 KRT39Q6A163 491 aa3.79□□□□□ -1.8
MCF2-202ENST00000370573 JADE1Q6IE81 842 aa3.79□□□□□ -1.8
MCF2-202ENST00000370573 IQCEQ6IPM2 695 aa3.79□□□□□ -1.8
MCF2-202ENST00000370573 TRIM65Q6PJ69 517 aa3.79□□□□□ -1.8
MCF2-202ENST00000370573 UBE2R2Q712K3 238 aaPredicted RBP3.79□□□□□ -1.8
MCF2-202ENST00000370573 LRRC8DQ7L1W4 858 aa3.79□□□□□ -1.8
MCF2-202ENST00000370573 MRPL10Q7Z7H8 261 aaKnown RBP3.79□□□□□ -1.8
MCF2-202ENST00000370573 TMEM139Q8IV31 216 aa3.79□□□□□ -1.8
MCF2-202ENST00000370573 ARHGEF19Q8IW93 802 aa3.79□□□□□ -1.8
MCF2-202ENST00000370573 LRRC8AQ8IWT6 810 aa3.79□□□□□ -1.8
MCF2-202ENST00000370573 CXorf38Q8TB03 319 aa3.79□□□□□ -1.8
MCF2-202ENST00000370573 ABHD4Q8TB40 342 aa3.79□□□□□ -1.8
MCF2-202ENST00000370573 CAGE1Q8TC20 777 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms