RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 PYROXD2Q8N2H3 581 aa20.66■□□□□ 0.9
CLN3-205ENST00000359984 MNS1Q8NEH6 495 aa20.66■□□□□ 0.9
CLN3-205ENST00000359984 FAM71BQ8TC56 605 aa20.66■□□□□ 0.9
CLN3-205ENST00000359984 TKTL2Q9H0I9 626 aa20.66■□□□□ 0.9
CLN3-205ENST00000359984 HCFC1R1Q9NWW0 138 aa20.66■□□□□ 0.9
CLN3-205ENST00000359984 MTMR10Q9NXD2 777 aa20.66■□□□□ 0.9
CLN3-205ENST00000359984 TLR6Q9Y2C9 796 aa20.66■□□□□ 0.9
CLN3-205ENST00000359984 CTAGE15A4D2H0 777 aa20.65■□□□□ 0.9
CLN3-205ENST00000359984 C2orf78A6NCI8 922 aa20.65■□□□□ 0.9
CLN3-205ENST00000359984 COCHO43405 550 aa20.65■□□□□ 0.9
CLN3-205ENST00000359984 CTAGE8P0CG41 777 aa20.65■□□□□ 0.9
CLN3-205ENST00000359984 KRT10P13645 584 aa20.65■□□□□ 0.9
CLN3-205ENST00000359984 GABRR2P28476 465 aa20.65■□□□□ 0.9
CLN3-205ENST00000359984 CCR1P32246 355 aa20.65■□□□□ 0.9
CLN3-205ENST00000359984 ATP5C1P36542 298 aaKnown RBP20.65■□□□□ 0.9
CLN3-205ENST00000359984 CETN2P41208 172 aa20.65■□□□□ 0.9
CLN3-205ENST00000359984 TUBP50607 506 aa20.65■□□□□ 0.9
CLN3-205ENST00000359984 SCAPQ12770 1279 aa20.65■□□□□ 0.9
CLN3-205ENST00000359984 NNTQ13423 1086 aa20.65■□□□□ 0.9
CLN3-205ENST00000359984 DPYSL3Q14195 570 aa20.65■□□□□ 0.9
CLN3-205ENST00000359984 KRT81Q14533 505 aa20.65■□□□□ 0.9
CLN3-205ENST00000359984 PDK2Q15119 407 aa20.65■□□□□ 0.9
CLN3-205ENST00000359984 DPYSL2Q16555 572 aa20.65■□□□□ 0.9
CLN3-205ENST00000359984 LRIT3Q3SXY7 679 aa20.65■□□□□ 0.9
CLN3-205ENST00000359984 BRMS1LQ5PSV4 323 aa20.65■□□□□ 0.9
CLN3-205ENST00000359984 ZNF697Q5TEC3 545 aa20.65■□□□□ 0.9
CLN3-205ENST00000359984 KLHDC10Q6PID8 442 aa20.65■□□□□ 0.9
CLN3-205ENST00000359984 CTAGE6Q86UF2 777 aa20.65■□□□□ 0.9
CLN3-205ENST00000359984 CTAGE4Q8IX94 777 aa20.65■□□□□ 0.9
CLN3-205ENST00000359984 SPATA4Q8NEY3 305 aa20.65■□□□□ 0.9
CLN3-205ENST00000359984 SLC39A13Q96H72 371 aa20.65■□□□□ 0.9
CLN3-205ENST00000359984 KCTD15Q96SI1 283 aaPredicted RBP20.65■□□□□ 0.9
CLN3-205ENST00000359984 NAP1L3Q99457 506 aaPredicted RBP20.65■□□□□ 0.9
CLN3-205ENST00000359984 AP1M1Q9BXS5 423 aa20.65■□□□□ 0.9
CLN3-205ENST00000359984 CALN1Q9BXU9 219 aa20.65■□□□□ 0.9
CLN3-205ENST00000359984 TMEM51Q9NW97 253 aa20.65■□□□□ 0.9
CLN3-205ENST00000359984 ARHGEF38Q9NXL2 777 aa20.65■□□□□ 0.9
CLN3-205ENST00000359984 DNMT3LQ9UJW3 386 aa20.65■□□□□ 0.9
CLN3-205ENST00000359984 hCG_1818297A0A087WSY0 165 aa20.64■□□□□ 0.9
CLN3-205ENST00000359984 SLC12A8A0AV02 714 aa20.64■□□□□ 0.9
CLN3-205ENST00000359984 OAS1P00973 400 aaKnown RBP20.64■□□□□ 0.9
CLN3-205ENST00000359984 IL4RP24394 825 aa20.64■□□□□ 0.9
CLN3-205ENST00000359984 PTPN7P35236 360 aa20.64■□□□□ 0.9
CLN3-205ENST00000359984 TBX4P57082 545 aa20.64■□□□□ 0.9
CLN3-205ENST00000359984 MMRN1Q13201 1228 aa20.64■□□□□ 0.9
CLN3-205ENST00000359984 KCNC3Q14003 757 aa20.64■□□□□ 0.9
CLN3-205ENST00000359984 PPP2R5DQ14738 602 aa20.64■□□□□ 0.9
CLN3-205ENST00000359984 TRIP4Q15650 581 aaPredicted RBP20.64■□□□□ 0.9
CLN3-205ENST00000359984 CLUL1Q15846 466 aa20.64■□□□□ 0.9
CLN3-205ENST00000359984 PPP2R5EQ16537 467 aa20.64■□□□□ 0.9
CLN3-205ENST00000359984 ARL13BQ3SXY8 428 aa20.64■□□□□ 0.9
CLN3-205ENST00000359984 TFDP3Q5H9I0 405 aa20.64■□□□□ 0.9
CLN3-205ENST00000359984 EFHC2Q5JST6 749 aa20.64■□□□□ 0.9
CLN3-205ENST00000359984 MAP7D3Q8IWC1 876 aa20.64■□□□□ 0.9
CLN3-205ENST00000359984 ZDHHC14Q8IZN3 488 aa20.64■□□□□ 0.9
CLN3-205ENST00000359984 VN1R2Q8NFZ6 395 aa20.64■□□□□ 0.9
CLN3-205ENST00000359984 FCRL2Q96LA5 508 aaPredicted RBP20.64■□□□□ 0.9
CLN3-205ENST00000359984 RNF38Q9H0F5 515 aa20.64■□□□□ 0.9
CLN3-205ENST00000359984 ASAH2Q9NR71 780 aa20.64■□□□□ 0.9
CLN3-205ENST00000359984 ZDHHC7Q9NXF8 308 aa20.64■□□□□ 0.9
CLN3-205ENST00000359984 NR2E1Q9Y466 385 aa20.64■□□□□ 0.9
CLN3-205ENST00000359984 MYL4P12829 197 aa20.64■□□□□ 0.89
CLN3-205ENST00000359984 ADCY2Q08462 1091 aa20.64■□□□□ 0.89
CLN3-205ENST00000359984 PPP6R3Q5H9R7 873 aaPredicted RBP20.64■□□□□ 0.89
CLN3-205ENST00000359984 KAZNQ674X7 775 aa20.64■□□□□ 0.89
CLN3-205ENST00000359984 ELMSAN1Q6PJG2 1045 aa20.64■□□□□ 0.89
CLN3-205ENST00000359984 CDCA3Q99618 268 aaPredicted RBP20.64■□□□□ 0.89
CLN3-205ENST00000359984 PRKD2Q9BZL6 878 aa20.64■□□□□ 0.89
CLN3-205ENST00000359984 SLTMQ9NWH9 1034 aaKnown RBP eCLIP20.64■□□□□ 0.89
CLN3-205ENST00000359984 DNMT3BQ9UBC3 853 aaKnown RBP20.64■□□□□ 0.89
CLN3-205ENST00000359984 KCNU1A8MYU2 1149 aa20.63■□□□□ 0.89
CLN3-205ENST00000359984 KRIT1O00522 736 aa20.63■□□□□ 0.89
CLN3-205ENST00000359984 NRG2O14511 850 aaPredicted RBP20.63■□□□□ 0.89
CLN3-205ENST00000359984 PTPN2P17706 415 aa20.63■□□□□ 0.89
CLN3-205ENST00000359984 EPHA5P54756 1037 aa20.63■□□□□ 0.89
CLN3-205ENST00000359984 C2orf54Q08AI8 447 aa20.63■□□□□ 0.89
CLN3-205ENST00000359984 KLF1Q13351 362 aaPredicted RBP20.63■□□□□ 0.89
CLN3-205ENST00000359984 TXNDC8Q6A555 127 aa20.63■□□□□ 0.89
CLN3-205ENST00000359984 ANKRD7Q92527 254 aa20.63■□□□□ 0.89
CLN3-205ENST00000359984 NACA2Q9H009 215 aa20.63■□□□□ 0.89
CLN3-205ENST00000359984 RBM12Q9NTZ6 932 aaKnown RBP20.63■□□□□ 0.89
CLN3-205ENST00000359984 COLQQ9Y215 455 aaPredicted RBP20.63■□□□□ 0.89
CLN3-205ENST00000359984 CCDC195A0A1B0GUA6 201 aa20.62■□□□□ 0.89
CLN3-205ENST00000359984 A0A1W2PPC1 479 aa20.62■□□□□ 0.89
CLN3-205ENST00000359984 XYLBO75191 536 aa20.62■□□□□ 0.89
CLN3-205ENST00000359984 IGLV3-27P01718 113 aa20.62■□□□□ 0.89
CLN3-205ENST00000359984 CYP4F8P98187 520 aa20.62■□□□□ 0.89
CLN3-205ENST00000359984 SIX1Q15475 284 aaPredicted RBP20.62■□□□□ 0.89
CLN3-205ENST00000359984 MRPS31Q92665 395 aaKnown RBP20.62■□□□□ 0.89
CLN3-205ENST00000359984 PPP2R3CQ969Q6 453 aa20.62■□□□□ 0.89
CLN3-205ENST00000359984 ZNF707Q96C28 371 aaPredicted RBP20.62■□□□□ 0.89
CLN3-205ENST00000359984 TRPC7Q9HCX4 862 aa20.62■□□□□ 0.89
CLN3-205ENST00000359984 EFR3BQ9Y2G0 817 aa20.62■□□□□ 0.89
CLN3-205ENST00000359984 HBS1LQ9Y450 684 aaKnown RBP20.62■□□□□ 0.89
CLN3-205ENST00000359984 SNX10Q9Y5X0 201 aa20.62■□□□□ 0.89
CLN3-205ENST00000359984 CDH23Q9H251 3354 aa20.62■□□□□ 0.89
CLN3-205ENST00000359984 A0A1W2PRU2 124 aa20.62■□□□□ 0.89
CLN3-205ENST00000359984 SPDYE4A6NLX3 237 aa20.62■□□□□ 0.89
CLN3-205ENST00000359984 HMBSP08397 361 aa20.62■□□□□ 0.89
CLN3-205ENST00000359984 SLC2A3P11169 496 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms