RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 PCDHGA9Q9Y5G4 932 aaKnown RBP2.47□□□□□ -2.01
VPS54-202ENST00000354504 PCDHGA8Q9Y5G5 932 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 PCDHGA7Q9Y5G6 932 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 PCDHGA6Q9Y5G7 932 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 PCDHGA3Q9Y5H0 932 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 PCDHGA2Q9Y5H1 932 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 PCDHA10Q9Y5I2 948 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 VPS13CQ709C8 3753 aa2.47□□□□□ -2.01
VPS54-202ENST00000354504 C7orf72A4D263 438 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 GOLGA6L9A6NEM1 432 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 HHLA1C9JL84 531 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 CXCL11O14625 94 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 PPEF2O14830 753 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 SLC16A4O15374 487 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 GPR39O43194 453 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 EIF3JO75822 258 aaKnown RBP2.46□□□□□ -2.01
VPS54-202ENST00000354504 TGFB1P01137 390 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 PAEPP09466 180 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 COL6A2P12110 1019 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 GZMAP12544 262 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 ATF7P17544 494 aaPredicted RBP2.46□□□□□ -2.01
VPS54-202ENST00000354504 IL1R2P27930 398 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 MECP2P51608 486 aaKnown RBP2.46□□□□□ -2.01
VPS54-202ENST00000354504 JAK3P52333 1124 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 GP2P55259 537 aaKnown RBP2.46□□□□□ -2.01
VPS54-202ENST00000354504 TAS2R40P59535 323 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 PTENP60484 403 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 ERVFC1P60507 584 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 ERVK-21P61565 698 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 MAP7Q14244 749 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 EMC2Q15006 297 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 OASLQ15646 514 aaKnown RBP2.46□□□□□ -2.01
VPS54-202ENST00000354504 MSMPQ1L6U9 139 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 GAB4Q2WGN9 574 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 ARHGAP29Q52LW3 1261 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 GJC2Q5T442 439 aaPredicted RBP2.46□□□□□ -2.01
VPS54-202ENST00000354504 ZCCHC8Q6NZY4 707 aaKnown RBP2.46□□□□□ -2.01
VPS54-202ENST00000354504 RSPO2Q6UXX9 243 aaPredicted RBP2.46□□□□□ -2.01
VPS54-202ENST00000354504 OSTM1Q86WC4 334 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 PHF13Q86YI8 300 aaPredicted RBP2.46□□□□□ -2.01
VPS54-202ENST00000354504 CCDC65Q8IXS2 484 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 ABRAQ8N0Z2 381 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 RNF169Q8NCN4 708 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 SMC1BQ8NDV3 1235 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 CHAC2Q8WUX2 184 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 ATXN2LQ8WWM7 1075 aaKnown RBP2.46□□□□□ -2.01
VPS54-202ENST00000354504 CENPIQ92674 756 aaPredicted RBP2.46□□□□□ -2.01
VPS54-202ENST00000354504 PTPRN2Q92932 1015 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 FAF2Q96CS3 445 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 OPTNQ96CV9 577 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 RHOBTB2Q9BYZ6 727 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 UPF3AQ9H1J1 476 aaKnown RBP2.46□□□□□ -2.01
VPS54-202ENST00000354504 ACAD9Q9H845 621 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 TMEM8AQ9HCN3 771 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 EMC7Q9NPA0 242 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 SEMA3GQ9NS98 782 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 SAMD15Q9P1V8 674 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 STOML1Q9UBI4 398 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 SLC9A2Q9UBY0 812 aa2.46□□□□□ -2.01
VPS54-202ENST00000354504 CHORDC1Q9UHD1 332 aaPredicted RBP2.46□□□□□ -2.01
VPS54-202ENST00000354504 TNRC6BQ9UPQ9 1833 aaKnown RBP2.46□□□□□ -2.02
VPS54-202ENST00000354504 EML5Q05BV3 1969 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 MYADML2A6NDP7 307 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 MYO1FO00160 1098 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 ZSCAN12O43309 604 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 B4GALT4O60513 344 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 GAS7O60861 476 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 FYNP06241 537 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 PGK2P07205 417 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 CAPN2P17655 700 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 CCND2P30279 289 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 CXCR5P32302 372 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 PSMC2P35998 433 aaKnown RBP2.46□□□□□ -2.02
VPS54-202ENST00000354504 ETV3P41162 512 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 NAMPTP43490 491 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 IRAK1P51617 712 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 VAMP7P51809 220 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 DRG2P55039 364 aaKnown RBP2.46□□□□□ -2.02
VPS54-202ENST00000354504 GNG11P61952 73 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 MRPS25P82663 173 aaKnown RBP2.46□□□□□ -2.02
VPS54-202ENST00000354504 GUCY1A3Q02108 690 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 BNIP3Q12983 259 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 MSLNQ13421 630 aaPredicted RBP2.46□□□□□ -2.02
VPS54-202ENST00000354504 TUBB2AQ13885 445 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 IHHQ14623 411 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 CASP8Q14790 479 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 PCBP2Q15366 365 aaKnown RBP eCLIP2.46□□□□□ -2.02
VPS54-202ENST00000354504 NFE2Q16621 373 aaPredicted RBP2.46□□□□□ -2.02
VPS54-202ENST00000354504 TMEM266Q2M3C6 531 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 EEF1DP3Q658K8 133 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 METTL7BQ6UX53 244 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 LRRC31Q6UY01 552 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 OVCH1Q7RTY7 1134 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 SPRED2Q7Z698 418 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 THAP5Q7Z6K1 395 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 RASAL3Q86YV0 1011 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 WDR75Q8IWA0 830 aaKnown RBP2.46□□□□□ -2.02
VPS54-202ENST00000354504 FAM186BQ8IYM0 893 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 PPTC7Q8NI37 304 aa2.46□□□□□ -2.02
VPS54-202ENST00000354504 TRAPPC12Q8WVT3 735 aa2.46□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms