RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 EBNA1BP2Q99848 306 aaKnown RBP22.53■■□□□ 1.2
SHMT1-202ENST00000352886 GNEQ9Y223 722 aaKnown RBP22.53■■□□□ 1.2
SHMT1-202ENST00000352886 USP3Q9Y6I4 520 aa22.53■■□□□ 1.2
SHMT1-202ENST00000352886 NUMBLQ9Y6R0 609 aa22.53■■□□□ 1.2
SHMT1-202ENST00000352886 CSH1P0DML2 217 aa22.52■■□□□ 1.2
SHMT1-202ENST00000352886 CSH2P0DML3 217 aa22.52■■□□□ 1.2
SHMT1-202ENST00000352886 KCNE1P15382 129 aa22.52■■□□□ 1.2
SHMT1-202ENST00000352886 ARL4AP40617 200 aa22.52■■□□□ 1.2
SHMT1-202ENST00000352886 SERPINB4P48594 390 aa22.52■■□□□ 1.2
SHMT1-202ENST00000352886 SULT1E1P49888 294 aa22.52■■□□□ 1.2
SHMT1-202ENST00000352886 ADIGQ0VDE8 80 aa22.52■■□□□ 1.2
SHMT1-202ENST00000352886 BMPR2Q13873 1038 aa22.52■■□□□ 1.2
SHMT1-202ENST00000352886 PRKD1Q15139 912 aaPredicted RBP22.52■■□□□ 1.2
SHMT1-202ENST00000352886 SV2CQ496J9 727 aa22.52■■□□□ 1.2
SHMT1-202ENST00000352886 UBXN11Q5T124 520 aa22.52■■□□□ 1.2
SHMT1-202ENST00000352886 LGSNQ5TDP6 509 aa22.52■■□□□ 1.2
SHMT1-202ENST00000352886 PIGZQ86VD9 579 aa22.52■■□□□ 1.2
SHMT1-202ENST00000352886 GSDMBQ8TAX9 411 aa22.52■■□□□ 1.2
SHMT1-202ENST00000352886 PARK7Q99497 189 aaKnown RBP22.52■■□□□ 1.2
SHMT1-202ENST00000352886 UNCXA6NJT0 531 aa22.52■■□□□ 1.2
SHMT1-202ENST00000352886 TREHO43280 583 aa22.52■■□□□ 1.2
SHMT1-202ENST00000352886 HUS1O60921 280 aa22.52■■□□□ 1.2
SHMT1-202ENST00000352886 GSTA2P09210 222 aa22.52■■□□□ 1.2
SHMT1-202ENST00000352886 DENND5BQ6ZUT9 1274 aa22.52■■□□□ 1.2
SHMT1-202ENST00000352886 TLK2Q86UE8 772 aa22.52■■□□□ 1.2
SHMT1-202ENST00000352886 B3GALNT2Q8NCR0 500 aa22.52■■□□□ 1.2
SHMT1-202ENST00000352886 TFB1MQ8WVM0 346 aaKnown RBP22.52■■□□□ 1.2
SHMT1-202ENST00000352886 HTR3CQ8WXA8 447 aa22.52■■□□□ 1.2
SHMT1-202ENST00000352886 INPP5DQ92835 1189 aa22.52■■□□□ 1.2
SHMT1-202ENST00000352886 SLC7A6OSQ96CW6 309 aaPredicted RBP22.52■■□□□ 1.2
SHMT1-202ENST00000352886 TNIP3Q96KP6 325 aa22.52■■□□□ 1.2
SHMT1-202ENST00000352886 FZD10Q9ULW2 581 aa22.52■■□□□ 1.2
SHMT1-202ENST00000352886 SCN4AP35499 1836 aa22.52■■□□□ 1.2
SHMT1-202ENST00000352886 GLTPD2A6NH11 291 aa22.51■■□□□ 1.19
SHMT1-202ENST00000352886 XPO1O14980 1071 aaKnown RBP22.51■■□□□ 1.19
SHMT1-202ENST00000352886 VAV1P15498 845 aa22.51■■□□□ 1.19
SHMT1-202ENST00000352886 SEMA5AQ13591 1074 aa22.51■■□□□ 1.19
SHMT1-202ENST00000352886 PARP6Q2NL67 630 aa22.51■■□□□ 1.19
SHMT1-202ENST00000352886 SLC25A52Q3SY17 297 aa22.51■■□□□ 1.19
SHMT1-202ENST00000352886 XKR4Q5GH76 650 aa22.51■■□□□ 1.19
SHMT1-202ENST00000352886 SPDYAQ5MJ70 313 aa22.51■■□□□ 1.19
SHMT1-202ENST00000352886 CLNKQ7Z7G1 428 aa22.51■■□□□ 1.19
SHMT1-202ENST00000352886 LGMNQ99538 433 aa22.51■■□□□ 1.19
SHMT1-202ENST00000352886 DNAI2Q9GZS0 605 aa22.51■■□□□ 1.19
SHMT1-202ENST00000352886 F5H423 210 aaPredicted RBP22.51■■□□□ 1.19
SHMT1-202ENST00000352886 LILRA4P59901 499 aa22.51■■□□□ 1.19
SHMT1-202ENST00000352886 ADAM17P78536 824 aa22.51■■□□□ 1.19
SHMT1-202ENST00000352886 DCAF6Q58WW2 860 aa22.51■■□□□ 1.19
SHMT1-202ENST00000352886 LIMS2Q7Z4I7 341 aa22.51■■□□□ 1.19
SHMT1-202ENST00000352886 OSTM1Q86WC4 334 aa22.51■■□□□ 1.19
SHMT1-202ENST00000352886 STAMBPL1Q96FJ0 436 aa22.51■■□□□ 1.19
SHMT1-202ENST00000352886 OLFM3Q96PB7 478 aa22.51■■□□□ 1.19
SHMT1-202ENST00000352886 PTPN18Q99952 460 aa22.51■■□□□ 1.19
SHMT1-202ENST00000352886 XAB2Q9HCS7 855 aaKnown RBP22.51■■□□□ 1.19
SHMT1-202ENST00000352886 RFPL1O75677 317 aa22.5■■□□□ 1.19
SHMT1-202ENST00000352886 DGKIO75912 1065 aa22.5■■□□□ 1.19
SHMT1-202ENST00000352886 PITX1P78337 314 aaPredicted RBP22.5■■□□□ 1.19
SHMT1-202ENST00000352886 ANKRD20A2Q5SQ80 823 aa22.5■■□□□ 1.19
SHMT1-202ENST00000352886 ANKRD20A1Q5TYW2 823 aa22.5■■□□□ 1.19
SHMT1-202ENST00000352886 ANKRD20A3Q5VUR7 823 aa22.5■■□□□ 1.19
SHMT1-202ENST00000352886 ARRDC4Q8NCT1 418 aa22.5■■□□□ 1.19
SHMT1-202ENST00000352886 SLC13A1Q9BZW2 595 aa22.5■■□□□ 1.19
SHMT1-202ENST00000352886 TMPRSS4Q9NRS4 437 aa22.5■■□□□ 1.19
SHMT1-202ENST00000352886 IPPQ9Y573 584 aa22.5■■□□□ 1.19
SHMT1-202ENST00000352886 SYNJ2BP-COX16A0A087WUM0 186 aa22.5■■□□□ 1.19
SHMT1-202ENST00000352886 FAM159BA6NKW6 160 aa22.5■■□□□ 1.19
SHMT1-202ENST00000352886 CLDN5O00501 218 aa22.5■■□□□ 1.19
SHMT1-202ENST00000352886 KRT38O76015 456 aa22.5■■□□□ 1.19
SHMT1-202ENST00000352886 MRPS5P82675 430 aaKnown RBP22.5■■□□□ 1.19
SHMT1-202ENST00000352886 OLFML2BQ68BL8 750 aa22.5■■□□□ 1.19
SHMT1-202ENST00000352886 NETO2Q8NC67 525 aa22.5■■□□□ 1.19
SHMT1-202ENST00000352886 ARHGEF4Q9NR80 690 aa22.5■■□□□ 1.19
SHMT1-202ENST00000352886 COX16Q9P0S2 106 aa22.5■■□□□ 1.19
SHMT1-202ENST00000352886 PLLPQ9Y342 182 aa22.5■■□□□ 1.19
SHMT1-202ENST00000352886 PCDHA11Q9Y5I1 949 aa22.5■■□□□ 1.19
SHMT1-202ENST00000352886 MFSD11O43934 449 aa22.49■■□□□ 1.19
SHMT1-202ENST00000352886 CCND1P24385 295 aa22.49■■□□□ 1.19
SHMT1-202ENST00000352886 ACAT1P24752 427 aaKnown RBP22.49■■□□□ 1.19
SHMT1-202ENST00000352886 RASSF2P50749 326 aa22.49■■□□□ 1.19
SHMT1-202ENST00000352886 ARFIP2P53365 341 aa22.49■■□□□ 1.19
SHMT1-202ENST00000352886 CTC1Q2NKJ3 1217 aa22.49■■□□□ 1.19
SHMT1-202ENST00000352886 GPATCH11Q8N954 259 aa22.49■■□□□ 1.19
SHMT1-202ENST00000352886 DUSP16Q9BY84 665 aa22.49■■□□□ 1.19
SHMT1-202ENST00000352886 KCNK13Q9HB14 408 aa22.49■■□□□ 1.19
SHMT1-202ENST00000352886 HEY2Q9UBP5 337 aa22.49■■□□□ 1.19
SHMT1-202ENST00000352886 A0A0A0MRY4 1105 aa22.49■■□□□ 1.19
SHMT1-202ENST00000352886 IQCA1LA6NCM1 817 aa22.49■■□□□ 1.19
SHMT1-202ENST00000352886 BEST1O76090 585 aa22.49■■□□□ 1.19
SHMT1-202ENST00000352886 TGDSO95455 350 aa22.49■■□□□ 1.19
SHMT1-202ENST00000352886 PSEN2P49810 448 aa22.49■■□□□ 1.19
SHMT1-202ENST00000352886 SLC8A3P57103 927 aa22.49■■□□□ 1.19
SHMT1-202ENST00000352886 ACCSLQ4AC99 568 aa22.49■■□□□ 1.19
SHMT1-202ENST00000352886 MROH9Q5TGP6 573 aa22.49■■□□□ 1.19
SHMT1-202ENST00000352886 SPATA13Q96N96 652 aa22.49■■□□□ 1.19
SHMT1-202ENST00000352886 HNRNPABQ99729 332 aaKnown RBP22.49■■□□□ 1.19
SHMT1-202ENST00000352886 MECRQ9BV79 373 aa22.49■■□□□ 1.19
SHMT1-202ENST00000352886 TBC1D10AQ9BXI6 508 aa22.49■■□□□ 1.19
SHMT1-202ENST00000352886 HACD1B0YJ81 288 aa22.48■■□□□ 1.19
SHMT1-202ENST00000352886 CCNFP41002 786 aa22.48■■□□□ 1.19
SHMT1-202ENST00000352886 NBPF20Q3BBV1 942 aa22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms